RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 GCLCP48506 637 aaPredicted RBP16.61■□□□□ 0.25
CHD3-209ENST00000473376 FAM110CQ1W6H9 321 aa16.61■□□□□ 0.25
CHD3-209ENST00000473376 SH3D19Q5HYK7 790 aa16.61■□□□□ 0.25
CHD3-209ENST00000473376 NAA16Q6N069 864 aaPredicted RBP16.61■□□□□ 0.25
CHD3-209ENST00000473376 PI16Q6UXB8 463 aa16.61■□□□□ 0.25
CHD3-209ENST00000473376 TBC1D9Q6ZT07 1266 aa16.61■□□□□ 0.25
CHD3-209ENST00000473376 FOXP4Q8IVH2 680 aaPredicted RBP16.61■□□□□ 0.25
CHD3-209ENST00000473376 ZNF280CQ8ND82 737 aa16.61■□□□□ 0.25
CHD3-209ENST00000473376 USP17L5A8MUK1 530 aa16.6■□□□□ 0.25
CHD3-209ENST00000473376 SURF6O75683 361 aaKnown RBP16.6■□□□□ 0.25
CHD3-209ENST00000473376 TTC39AQ5SRH9 613 aa16.6■□□□□ 0.25
CHD3-209ENST00000473376 GADL1Q6ZQY3 521 aa16.6■□□□□ 0.25
CHD3-209ENST00000473376 FTSJ3Q8IY81 847 aaKnown RBP16.6■□□□□ 0.25
CHD3-209ENST00000473376 TEX11Q8IYF3 940 aa16.6■□□□□ 0.25
CHD3-209ENST00000473376 SMCR8Q8TEV9 937 aaPredicted RBP16.6■□□□□ 0.25
CHD3-209ENST00000473376 WDR18Q9BV38 432 aa16.6■□□□□ 0.25
CHD3-209ENST00000473376 AS3MTQ9HBK9 375 aa16.6■□□□□ 0.25
CHD3-209ENST00000473376 DOCK1Q14185 1865 aa16.59■□□□□ 0.25
CHD3-209ENST00000473376 TRIM75PA6NK02 468 aa16.59■□□□□ 0.25
CHD3-209ENST00000473376 ASNSP08243 561 aa16.59■□□□□ 0.25
CHD3-209ENST00000473376 HABP4Q5JVS0 413 aaKnown RBP16.59■□□□□ 0.25
CHD3-209ENST00000473376 TNNQ9UQP3 1299 aa16.59■□□□□ 0.25
CHD3-209ENST00000473376 BRCA2P51587 3418 aa16.59■□□□□ 0.25
CHD3-209ENST00000473376 CYP2E1P05181 493 aaPredicted RBP16.58■□□□□ 0.24
CHD3-209ENST00000473376 PRKCZQ05513 592 aa16.58■□□□□ 0.24
CHD3-209ENST00000473376 SPP2Q13103 211 aa16.58■□□□□ 0.24
CHD3-209ENST00000473376 OS9Q13438 667 aaPredicted RBP16.58■□□□□ 0.24
CHD3-209ENST00000473376 UBE2Q1Q7Z7E8 422 aa16.58■□□□□ 0.24
CHD3-209ENST00000473376 ERC1Q8IUD2 1116 aa16.58■□□□□ 0.24
CHD3-209ENST00000473376 C19orf81C9J6K1 198 aa16.57■□□□□ 0.24
CHD3-209ENST00000473376 TNPO2O14787 897 aaKnown RBP16.57■□□□□ 0.24
CHD3-209ENST00000473376 MS4A1P11836 297 aa16.57■□□□□ 0.24
CHD3-209ENST00000473376 MTFR1Q15390 333 aa16.57■□□□□ 0.24
CHD3-209ENST00000473376 SH3RF3Q8TEJ3 882 aaPredicted RBP16.57■□□□□ 0.24
CHD3-209ENST00000473376 COA7Q96BR5 231 aa16.57■□□□□ 0.24
CHD3-209ENST00000473376 DBNDD2Q9BQY9 259 aa16.57■□□□□ 0.24
CHD3-209ENST00000473376 ADCY3O60266 1144 aa16.56■□□□□ 0.24
CHD3-209ENST00000473376 CCL5P13501 91 aa16.56■□□□□ 0.24
CHD3-209ENST00000473376 HOXA7P31268 230 aaPredicted RBP16.56■□□□□ 0.24
CHD3-209ENST00000473376 FLT3LGP49771 235 aa16.56■□□□□ 0.24
CHD3-209ENST00000473376 HSP90AB4PQ58FF6 505 aa16.56■□□□□ 0.24
CHD3-209ENST00000473376 SHISA4Q96DD7 197 aa16.56■□□□□ 0.24
CHD3-209ENST00000473376 RNF208Q9H0X6 261 aa16.56■□□□□ 0.24
CHD3-209ENST00000473376 AATFQ9NY61 560 aaKnown RBP eCLIP16.56■□□□□ 0.24
CHD3-209ENST00000473376 PHIPQ8WWQ0 1821 aa16.56■□□□□ 0.24
CHD3-209ENST00000473376 PTPRFP10586 1907 aa16.55■□□□□ 0.24
CHD3-209ENST00000473376 FLT1P17948 1338 aa16.55■□□□□ 0.24
CHD3-209ENST00000473376 BACE1P56817 501 aa16.55■□□□□ 0.24
CHD3-209ENST00000473376 HNRNPUQ00839 825 aaKnown RBP eCLIP16.55■□□□□ 0.24
CHD3-209ENST00000473376 ITPRIPQ8IWB1 547 aa16.55■□□□□ 0.24
CHD3-209ENST00000473376 ANKRD13CQ8N6S4 541 aa16.55■□□□□ 0.24
CHD3-209ENST00000473376 GTF3C2Q8WUA4 911 aaPredicted RBP16.55■□□□□ 0.24
CHD3-209ENST00000473376 HTATIP2Q9BUP3 242 aa16.55■□□□□ 0.24
CHD3-209ENST00000473376 MORF4L1Q9UBU8 362 aa16.55■□□□□ 0.24
CHD3-209ENST00000473376 BIN2Q9UBW5 565 aaPredicted RBP16.55■□□□□ 0.24
CHD3-209ENST00000473376 DBNLQ9UJU6 430 aaKnown RBP16.55■□□□□ 0.24
CHD3-209ENST00000473376 TAOK2Q9UL54 1235 aa16.55■□□□□ 0.24
CHD3-209ENST00000473376 ZBED9Q6R2W3 1325 aa16.54■□□□□ 0.24
CHD3-209ENST00000473376 SGPL1O95470 568 aa16.54■□□□□ 0.24
CHD3-209ENST00000473376 HLA-DOAP06340 250 aa16.54■□□□□ 0.24
CHD3-209ENST00000473376 TREML2Q5T2D2 321 aa16.54■□□□□ 0.24
CHD3-209ENST00000473376 TGFBRAP1Q8WUH2 860 aa16.54■□□□□ 0.24
CHD3-209ENST00000473376 EAF2Q96CJ1 260 aaPredicted RBP16.54■□□□□ 0.24
CHD3-209ENST00000473376 EHD4Q9H223 541 aa16.54■□□□□ 0.24
CHD3-209ENST00000473376 GABRQQ9UN88 632 aa16.54■□□□□ 0.24
CHD3-209ENST00000473376 SLURP2P0DP57 97 aa16.53■□□□□ 0.24
CHD3-209ENST00000473376 ZAP70P43403 619 aa16.53■□□□□ 0.24
CHD3-209ENST00000473376 HMGCS2P54868 508 aa16.53■□□□□ 0.24
CHD3-209ENST00000473376 CEP85Q6P2H3 762 aa16.53■□□□□ 0.24
CHD3-209ENST00000473376 U2AF1L4Q8WU68 220 aaKnown RBP16.53■□□□□ 0.24
CHD3-209ENST00000473376 ASCC2Q9H1I8 757 aaPredicted RBP16.53■□□□□ 0.24
CHD3-209ENST00000473376 PAK6Q9NQU5 681 aaPredicted RBP16.53■□□□□ 0.24
CHD3-209ENST00000473376 SNRKQ9NRH2 765 aa16.53■□□□□ 0.24
CHD3-209ENST00000473376 TMOD4Q9NZQ9 345 aa16.53■□□□□ 0.24
CHD3-209ENST00000473376 ZSWIM8A7E2V4 1837 aa16.53■□□□□ 0.24
CHD3-209ENST00000473376 MAST2Q6P0Q8 1798 aa16.53■□□□□ 0.24
CHD3-209ENST00000473376 LOC285556D6RIA3 1793 aa16.52■□□□□ 0.24
CHD3-209ENST00000473376 FAM196BA6NMK8 535 aa16.52■□□□□ 0.24
CHD3-209ENST00000473376 USP17L10C9JJH3 530 aa16.52■□□□□ 0.24
CHD3-209ENST00000473376 RLBP1P12271 317 aa16.52■□□□□ 0.24
CHD3-209ENST00000473376 MAP3K12Q12852 859 aa16.52■□□□□ 0.24
CHD3-209ENST00000473376 RRP1BQ14684 758 aaKnown RBP16.52■□□□□ 0.24
CHD3-209ENST00000473376 TATDN1Q6P1N9 297 aa16.52■□□□□ 0.24
CHD3-209ENST00000473376 ADGRA1Q86SQ6 560 aa16.52■□□□□ 0.24
CHD3-209ENST00000473376 CRACR2BQ8N4Y2 399 aaPredicted RBP16.52■□□□□ 0.24
CHD3-209ENST00000473376 TRIM34Q9BYJ4 488 aa16.52■□□□□ 0.24
CHD3-209ENST00000473376 CHMP4BQ9H444 224 aaKnown RBP16.52■□□□□ 0.24
CHD3-209ENST00000473376 MGAMO43451 1857 aa16.52■□□□□ 0.23
CHD3-209ENST00000473376 MYCP01106 439 aaPredicted RBP16.51■□□□□ 0.23
CHD3-209ENST00000473376 INHAP05111 366 aa16.51■□□□□ 0.23
CHD3-209ENST00000473376 XRCC5P13010 732 aaKnown RBP16.51■□□□□ 0.23
CHD3-209ENST00000473376 TTF1Q15361 905 aaPredicted RBP16.51■□□□□ 0.23
CHD3-209ENST00000473376 ANKLE1Q8NAG6 615 aa16.51■□□□□ 0.23
CHD3-209ENST00000473376 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.51■□□□□ 0.23
CHD3-209ENST00000473376 CRISPLD2Q9H0B8 497 aa16.51■□□□□ 0.23
CHD3-209ENST00000473376 DNAJC18Q9H819 358 aa16.51■□□□□ 0.23
CHD3-209ENST00000473376 PIH1D3Q9NQM4 214 aaKnown RBP16.51■□□□□ 0.23
CHD3-209ENST00000473376 GJD2Q9UKL4 321 aa16.51■□□□□ 0.23
CHD3-209ENST00000473376 NR2E3Q9Y5X4 410 aa16.51■□□□□ 0.23
CHD3-209ENST00000473376 CYP7A1P22680 504 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms