RNA–Protein interactions for RNA: ENST00000472585.1

VCL-204, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-204ENST00000472585 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.66□□□□□ -0.54
VCL-204ENST00000472585 RPTORQ8N122 1335 aa11.65□□□□□ -0.54
VCL-204ENST00000472585 LDHBP07195 334 aaKnown RBP11.65□□□□□ -0.54
VCL-204ENST00000472585 RRP1BQ14684 758 aaKnown RBP11.65□□□□□ -0.54
VCL-204ENST00000472585 GADL1Q6ZQY3 521 aa11.65□□□□□ -0.54
VCL-204ENST00000472585 SCYL3Q8IZE3 742 aa11.65□□□□□ -0.54
VCL-204ENST00000472585 RFX7Q2KHR2 1363 aa11.65□□□□□ -0.55
VCL-204ENST00000472585 GAKO14976 1311 aa11.64□□□□□ -0.55
VCL-204ENST00000472585 SALL1Q9NSC2 1324 aa11.64□□□□□ -0.55
VCL-204ENST00000472585 ATP2B3Q16720 1220 aa11.64□□□□□ -0.55
VCL-204ENST00000472585 TREML2Q5T2D2 321 aa11.64□□□□□ -0.55
VCL-204ENST00000472585 IFNLR1Q8IU57 520 aaPredicted RBP11.64□□□□□ -0.55
VCL-204ENST00000472585 C11orf49Q9H6J7 331 aa11.64□□□□□ -0.55
VCL-204ENST00000472585 HMX1Q9NP08 348 aaPredicted RBP11.64□□□□□ -0.55
VCL-204ENST00000472585 PICK1Q9NRD5 415 aa11.64□□□□□ -0.55
VCL-204ENST00000472585 DDX60LQ5H9U9 1706 aaKnown RBP11.63□□□□□ -0.55
VCL-204ENST00000472585 PTPRCP08575 1304 aa11.63□□□□□ -0.55
VCL-204ENST00000472585 MYH13Q9UKX3 1938 aa11.63□□□□□ -0.55
VCL-204ENST00000472585 ENTPD3O75355 529 aa11.63□□□□□ -0.55
VCL-204ENST00000472585 CIAO1O76071 339 aa11.63□□□□□ -0.55
VCL-204ENST00000472585 RHBDL3P58872 404 aa11.63□□□□□ -0.55
VCL-204ENST00000472585 TIMM10P62072 90 aa11.63□□□□□ -0.55
VCL-204ENST00000472585 TRIM32Q13049 653 aa11.63□□□□□ -0.55
VCL-204ENST00000472585 CCDC102BQ68D86 513 aa11.63□□□□□ -0.55
VCL-204ENST00000472585 PRDM6Q9NQX0 595 aa11.63□□□□□ -0.55
VCL-204ENST00000472585 TRIM75PA6NK02 468 aa11.62□□□□□ -0.55
VCL-204ENST00000472585 FAM196BA6NMK8 535 aa11.62□□□□□ -0.55
VCL-204ENST00000472585 PEX10O60683 326 aa11.62□□□□□ -0.55
VCL-204ENST00000472585 CTNND1O60716 968 aaKnown RBP11.62□□□□□ -0.55
VCL-204ENST00000472585 HMGCRP04035 888 aa11.62□□□□□ -0.55
VCL-204ENST00000472585 ZEB1P37275 1124 aaPredicted RBP11.62□□□□□ -0.55
VCL-204ENST00000472585 RASGRF1Q13972 1273 aa11.62□□□□□ -0.55
VCL-204ENST00000472585 FAM109BQ6ICB4 259 aaPredicted RBP11.62□□□□□ -0.55
VCL-204ENST00000472585 ANKRD13CQ8N6S4 541 aa11.62□□□□□ -0.55
VCL-204ENST00000472585 FAM163AQ96GL9 167 aaPredicted RBP11.62□□□□□ -0.55
VCL-204ENST00000472585 CDCA7LQ96GN5 454 aa11.62□□□□□ -0.55
VCL-204ENST00000472585 FAM161BQ96MY7 647 aa11.62□□□□□ -0.55
VCL-204ENST00000472585 CEP126Q9P2H0 1117 aa11.62□□□□□ -0.55
VCL-204ENST00000472585 GJD2Q9UKL4 321 aa11.62□□□□□ -0.55
VCL-204ENST00000472585 DENND2AQ9ULE3 1009 aa11.62□□□□□ -0.55
VCL-204ENST00000472585 SLC45A1Q9Y2W3 748 aa11.62□□□□□ -0.55
VCL-204ENST00000472585 PTPRFP10586 1907 aa11.61□□□□□ -0.55
VCL-204ENST00000472585 ANP32CO43423 234 aa11.61□□□□□ -0.55
VCL-204ENST00000472585 JAG1P78504 1218 aa11.61□□□□□ -0.55
VCL-204ENST00000472585 SLFN5Q08AF3 891 aa11.61□□□□□ -0.55
VCL-204ENST00000472585 LAMA2P24043 3122 aaKnown RBP11.6□□□□□ -0.55
VCL-204ENST00000472585 VCANP13611 3396 aa11.6□□□□□ -0.55
VCL-204ENST00000472585 POTEB2H3BUK9 544 aa11.6□□□□□ -0.55
VCL-204ENST00000472585 SEMA3EO15041 775 aa11.6□□□□□ -0.55
VCL-204ENST00000472585 BTDP43251 543 aa11.6□□□□□ -0.55
VCL-204ENST00000472585 MDM2Q00987 491 aaPredicted RBP11.6□□□□□ -0.55
VCL-204ENST00000472585 MECOMQ03112 1051 aa11.6□□□□□ -0.55
VCL-204ENST00000472585 PICALMQ13492 652 aa11.6□□□□□ -0.55
VCL-204ENST00000472585 ZNF697Q5TEC3 545 aa11.6□□□□□ -0.55
VCL-204ENST00000472585 PI16Q6UXB8 463 aa11.6□□□□□ -0.55
VCL-204ENST00000472585 RASEFQ8IZ41 740 aa11.6□□□□□ -0.55
VCL-204ENST00000472585 GUCD1Q96NT3 240 aa11.6□□□□□ -0.55
VCL-204ENST00000472585 COPRSQ9NQ92 184 aa11.6□□□□□ -0.55
VCL-204ENST00000472585 GNL3LQ9NVN8 582 aaKnown RBP11.6□□□□□ -0.55
VCL-204ENST00000472585 PNMA3Q9UL41 463 aa11.6□□□□□ -0.55
VCL-204ENST00000472585 AGTPBP1Q9UPW5 1226 aa11.6□□□□□ -0.55
VCL-204ENST00000472585 LRRFIP2Q9Y608 721 aaKnown RBP11.6□□□□□ -0.55
VCL-204ENST00000472585 DOCK2Q92608 1830 aa11.6□□□□□ -0.55
VCL-204ENST00000472585 TTC28Q96AY4 2481 aa11.59□□□□□ -0.55
VCL-204ENST00000472585 GPR75-ASB3A0A0A6YYF3 556 aa11.59□□□□□ -0.55
VCL-204ENST00000472585 TBC1D12O60347 775 aa11.59□□□□□ -0.55
VCL-204ENST00000472585 IL15P40933 162 aaPredicted RBP11.59□□□□□ -0.55
VCL-204ENST00000472585 NUBP1P53384 320 aa11.59□□□□□ -0.55
VCL-204ENST00000472585 SPP2Q13103 211 aa11.59□□□□□ -0.55
VCL-204ENST00000472585 FAM110CQ1W6H9 321 aa11.59□□□□□ -0.55
VCL-204ENST00000472585 POTEEQ6S8J3 1075 aa11.59□□□□□ -0.55
VCL-204ENST00000472585 TBC1D9Q6ZT07 1266 aa11.59□□□□□ -0.55
VCL-204ENST00000472585 ZSCAN29Q8IWY8 852 aaPredicted RBP11.59□□□□□ -0.55
VCL-204ENST00000472585 TRMT2AQ8IZ69 625 aaKnown RBP11.59□□□□□ -0.55
VCL-204ENST00000472585 FAM212AQ96EL1 285 aa11.59□□□□□ -0.55
VCL-204ENST00000472585 MEIS3Q99687 375 aa11.59□□□□□ -0.55
VCL-204ENST00000472585 LBHD1Q9BQE6 289 aaPredicted RBP11.59□□□□□ -0.55
VCL-204ENST00000472585 ABCF2Q9UG63 623 aa11.59□□□□□ -0.55
VCL-204ENST00000472585 NOB1Q9ULX3 412 aaKnown RBP11.59□□□□□ -0.55
VCL-204ENST00000472585 UBTFL1P0CB47 393 aaPredicted RBP11.58□□□□□ -0.56
VCL-204ENST00000472585 TFCP2Q12800 502 aa11.58□□□□□ -0.56
VCL-204ENST00000472585 SHROOM1Q2M3G4 852 aaPredicted RBP11.58□□□□□ -0.56
VCL-204ENST00000472585 SYMPKQ92797 1274 aaKnown RBP11.58□□□□□ -0.56
VCL-204ENST00000472585 XAGE2Q96GT9 111 aa11.58□□□□□ -0.56
VCL-204ENST00000472585 HMG20BQ9P0W2 317 aa11.58□□□□□ -0.56
VCL-204ENST00000472585 OGDHLQ9ULD0 1010 aa11.58□□□□□ -0.56
VCL-204ENST00000472585 PHIPQ8WWQ0 1821 aa11.58□□□□□ -0.56
VCL-204ENST00000472585 MROH7-TTC4A0A0A0MT08 1334 aa11.58□□□□□ -0.56
VCL-204ENST00000472585 DOCK1Q14185 1865 aa11.57□□□□□ -0.56
VCL-204ENST00000472585 A0A1B0GUL7 405 aa11.57□□□□□ -0.56
VCL-204ENST00000472585 E9PSI1 815 aa11.57□□□□□ -0.56
VCL-204ENST00000472585 GCLCP48506 637 aaPredicted RBP11.57□□□□□ -0.56
VCL-204ENST00000472585 HMGCS2P54868 508 aa11.57□□□□□ -0.56
VCL-204ENST00000472585 ALDH1L2Q3SY69 923 aa11.57□□□□□ -0.56
VCL-204ENST00000472585 ZNF579Q8NAF0 562 aaKnown RBP11.57□□□□□ -0.56
VCL-204ENST00000472585 MAFAQ8NHW3 353 aaPredicted RBP11.57□□□□□ -0.56
VCL-204ENST00000472585 SPOCK2Q92563 424 aa11.57□□□□□ -0.56
VCL-204ENST00000472585 NSUN4Q96CB9 384 aaKnown RBP11.57□□□□□ -0.56
VCL-204ENST00000472585 ASCC2Q9H1I8 757 aaPredicted RBP11.57□□□□□ -0.56
VCL-204ENST00000472585 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms