RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 CCDC8Q9H0W5 538 aaPredicted RBP20.29■□□□□ 0.84
CCDC28B-204ENST00000469003 AATFQ9NY61 560 aaKnown RBP eCLIP20.29■□□□□ 0.84
CCDC28B-204ENST00000469003 TLR7Q9NYK1 1049 aaKnown RBP20.29■□□□□ 0.84
CCDC28B-204ENST00000469003 SLC45A1Q9Y2W3 748 aa20.29■□□□□ 0.84
CCDC28B-204ENST00000469003 ATAD5Q96QE3 1844 aa20.29■□□□□ 0.84
CCDC28B-204ENST00000469003 CDK5RAP2Q96SN8 1893 aa20.28■□□□□ 0.84
CCDC28B-204ENST00000469003 FOCADQ5VW36 1801 aa20.28■□□□□ 0.84
CCDC28B-204ENST00000469003 CYP2C8P10632 490 aa20.28■□□□□ 0.84
CCDC28B-204ENST00000469003 MS4A1P11836 297 aa20.28■□□□□ 0.84
CCDC28B-204ENST00000469003 TRIM47Q96LD4 638 aa20.28■□□□□ 0.84
CCDC28B-204ENST00000469003 PIH1D3Q9NQM4 214 aaKnown RBP20.28■□□□□ 0.84
CCDC28B-204ENST00000469003 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.28■□□□□ 0.84
CCDC28B-204ENST00000469003 SRRDQ9UH36 339 aa20.28■□□□□ 0.84
CCDC28B-204ENST00000469003 HERC5Q9UII4 1024 aaKnown RBP20.28■□□□□ 0.84
CCDC28B-204ENST00000469003 TRIM75PA6NK02 468 aa20.27■□□□□ 0.84
CCDC28B-204ENST00000469003 HOXD10P28358 340 aa20.27■□□□□ 0.84
CCDC28B-204ENST00000469003 ADGRA1Q86SQ6 560 aa20.27■□□□□ 0.84
CCDC28B-204ENST00000469003 CCDC84Q86UT8 332 aaPredicted RBP20.27■□□□□ 0.84
CCDC28B-204ENST00000469003 ERC1Q8IUD2 1116 aa20.27■□□□□ 0.84
CCDC28B-204ENST00000469003 TBC1D2Q9BYX2 928 aa20.27■□□□□ 0.84
CCDC28B-204ENST00000469003 DHX36Q9H2U1 1008 aaKnown RBP20.27■□□□□ 0.84
CCDC28B-204ENST00000469003 SIPA1L1O43166 1804 aa20.27■□□□□ 0.84
CCDC28B-204ENST00000469003 MGAMO43451 1857 aa20.26■□□□□ 0.83
CCDC28B-204ENST00000469003 ECM2O94769 699 aaPredicted RBP20.26■□□□□ 0.83
CCDC28B-204ENST00000469003 FMNL1O95466 1100 aaPredicted RBP20.26■□□□□ 0.83
CCDC28B-204ENST00000469003 EN2P19622 333 aaPredicted RBP20.26■□□□□ 0.83
CCDC28B-204ENST00000469003 OSBPP22059 807 aa20.26■□□□□ 0.83
CCDC28B-204ENST00000469003 CAP2P40123 477 aa20.26■□□□□ 0.83
CCDC28B-204ENST00000469003 SH3TC2Q8TF17 1288 aa20.26■□□□□ 0.83
CCDC28B-204ENST00000469003 PI4KBQ9UBF8 816 aa20.26■□□□□ 0.83
CCDC28B-204ENST00000469003 EXOC6BQ9Y2D4 811 aa20.26■□□□□ 0.83
CCDC28B-204ENST00000469003 HSP90AB4PQ58FF6 505 aa20.25■□□□□ 0.83
CCDC28B-204ENST00000469003 TGFBRAP1Q8WUH2 860 aa20.25■□□□□ 0.83
CCDC28B-204ENST00000469003 AGTPBP1Q9UPW5 1226 aa20.25■□□□□ 0.83
CCDC28B-204ENST00000469003 FLT1P17948 1338 aa20.25■□□□□ 0.83
CCDC28B-204ENST00000469003 LOC285556D6RIA3 1793 aa20.24■□□□□ 0.83
CCDC28B-204ENST00000469003 CEP290O15078 2479 aa20.24■□□□□ 0.83
CCDC28B-204ENST00000469003 FCGRTP55899 365 aa20.24■□□□□ 0.83
CCDC28B-204ENST00000469003 RRP1BQ14684 758 aaKnown RBP20.24■□□□□ 0.83
CCDC28B-204ENST00000469003 SLC4A8Q2Y0W8 1093 aa20.24■□□□□ 0.83
CCDC28B-204ENST00000469003 MAPKAPK5Q8IW41 473 aa20.24■□□□□ 0.83
CCDC28B-204ENST00000469003 PROCA1Q8NCQ7 364 aaPredicted RBP20.24■□□□□ 0.83
CCDC28B-204ENST00000469003 MYPNQ86TC9 1320 aa20.24■□□□□ 0.83
CCDC28B-204ENST00000469003 USP17L5A8MUK1 530 aa20.23■□□□□ 0.83
CCDC28B-204ENST00000469003 CYP7A1P22680 504 aa20.23■□□□□ 0.83
CCDC28B-204ENST00000469003 SPP2Q13103 211 aa20.23■□□□□ 0.83
CCDC28B-204ENST00000469003 AACSQ86V21 672 aa20.23■□□□□ 0.83
CCDC28B-204ENST00000469003 METTL16Q86W50 562 aaKnown RBP20.23■□□□□ 0.83
CCDC28B-204ENST00000469003 ZNF280CQ8ND82 737 aa20.23■□□□□ 0.83
CCDC28B-204ENST00000469003 RAET1EQ8TD07 263 aa20.23■□□□□ 0.83
CCDC28B-204ENST00000469003 IDH1O75874 414 aaKnown RBP20.22■□□□□ 0.83
CCDC28B-204ENST00000469003 FXR1P51114 621 aaKnown RBP eCLIP20.22■□□□□ 0.83
CCDC28B-204ENST00000469003 FOXP4Q8IVH2 680 aaPredicted RBP20.22■□□□□ 0.83
CCDC28B-204ENST00000469003 RPAP2Q8IXW5 612 aaPredicted RBP20.22■□□□□ 0.83
CCDC28B-204ENST00000469003 SMCR8Q8TEV9 937 aaPredicted RBP20.22■□□□□ 0.83
CCDC28B-204ENST00000469003 DDX19BQ9UMR2 479 aa20.22■□□□□ 0.83
CCDC28B-204ENST00000469003 MYCP01106 439 aaPredicted RBP20.21■□□□□ 0.83
CCDC28B-204ENST00000469003 GRK4P32298 578 aa20.21■□□□□ 0.83
CCDC28B-204ENST00000469003 DYNLL1P63167 89 aaKnown RBP20.21■□□□□ 0.83
CCDC28B-204ENST00000469003 TREML2Q5T2D2 321 aa20.21■□□□□ 0.83
CCDC28B-204ENST00000469003 TMED8Q6PL24 325 aaPredicted RBP20.21■□□□□ 0.83
CCDC28B-204ENST00000469003 CERS3Q8IU89 383 aa20.21■□□□□ 0.83
CCDC28B-204ENST00000469003 RHPN1Q8TCX5 695 aa20.21■□□□□ 0.83
CCDC28B-204ENST00000469003 DNAJC18Q9H819 358 aa20.21■□□□□ 0.83
CCDC28B-204ENST00000469003 AS3MTQ9HBK9 375 aa20.21■□□□□ 0.83
CCDC28B-204ENST00000469003 PNMA3Q9UL41 463 aa20.21■□□□□ 0.83
CCDC28B-204ENST00000469003 BRCA2P51587 3418 aa20.21■□□□□ 0.83
CCDC28B-204ENST00000469003 HMGCS2P54868 508 aa20.2■□□□□ 0.82
CCDC28B-204ENST00000469003 PRKCZQ05513 592 aa20.2■□□□□ 0.82
CCDC28B-204ENST00000469003 MAP3K12Q12852 859 aa20.2■□□□□ 0.82
CCDC28B-204ENST00000469003 SH3D19Q5HYK7 790 aa20.2■□□□□ 0.82
CCDC28B-204ENST00000469003 CRACR2BQ8N4Y2 399 aaPredicted RBP20.2■□□□□ 0.82
CCDC28B-204ENST00000469003 MAGEB6Q8N7X4 407 aa20.2■□□□□ 0.82
CCDC28B-204ENST00000469003 ANTXR1Q9H6X2 564 aa20.2■□□□□ 0.82
CCDC28B-204ENST00000469003 IL1RAPL2Q9NP60 686 aa20.2■□□□□ 0.82
CCDC28B-204ENST00000469003 ZBTB40Q9NUA8 1239 aa20.2■□□□□ 0.82
CCDC28B-204ENST00000469003 PALD1Q9ULE6 856 aa20.2■□□□□ 0.82
CCDC28B-204ENST00000469003 COG6Q9Y2V7 657 aa20.2■□□□□ 0.82
CCDC28B-204ENST00000469003 NDUFB9Q9Y6M9 179 aa20.2■□□□□ 0.82
CCDC28B-204ENST00000469003 MYH1P12882 1939 aa20.19■□□□□ 0.82
CCDC28B-204ENST00000469003 TRIOBPQ9H2D6 2365 aa20.19■□□□□ 0.82
CCDC28B-204ENST00000469003 HMMRO75330 724 aa20.19■□□□□ 0.82
CCDC28B-204ENST00000469003 HLA-DOAP06340 250 aa20.19■□□□□ 0.82
CCDC28B-204ENST00000469003 ASNSP08243 561 aa20.19■□□□□ 0.82
CCDC28B-204ENST00000469003 PABPC4Q13310 644 aaKnown RBP eCLIP20.19■□□□□ 0.825e-6■■■□□ 18
CCDC28B-204ENST00000469003 WDR18Q9BV38 432 aa20.19■□□□□ 0.82
CCDC28B-204ENST00000469003 TRIM34Q9BYJ4 488 aa20.19■□□□□ 0.82
CCDC28B-204ENST00000469003 GINM1Q9NU53 330 aa20.19■□□□□ 0.82
CCDC28B-204ENST00000469003 SAP30BPQ9UHR5 308 aaKnown RBP20.19■□□□□ 0.82
CCDC28B-204ENST00000469003 MTFR1Q15390 333 aa20.18■□□□□ 0.82
CCDC28B-204ENST00000469003 MIGA1Q8NAN2 632 aa20.18■□□□□ 0.82
CCDC28B-204ENST00000469003 KIF1BPQ96EK5 621 aa20.18■□□□□ 0.82
CCDC28B-204ENST00000469003 CHMP4BQ9H444 224 aaKnown RBP20.18■□□□□ 0.82
CCDC28B-204ENST00000469003 RCAN3Q9UKA8 241 aa20.18■□□□□ 0.82
CCDC28B-204ENST00000469003 GABRQQ9UN88 632 aa20.18■□□□□ 0.82
CCDC28B-204ENST00000469003 USP5P45974 858 aa20.17■□□□□ 0.82
CCDC28B-204ENST00000469003 FAM110CQ1W6H9 321 aa20.17■□□□□ 0.82
CCDC28B-204ENST00000469003 SIRT2Q8IXJ6 389 aa20.17■□□□□ 0.82
CCDC28B-204ENST00000469003 CLASRPQ8N2M8 674 aaKnown RBP20.17■□□□□ 0.82
CCDC28B-204ENST00000469003 ANKRD13CQ8N6S4 541 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms