RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 CAP1Q01518 475 aa21.38■■□□□ 1.01
COL7A1-206ENST00000466591 MAPKAPK5Q8IW41 473 aa21.38■■□□□ 1.01
COL7A1-206ENST00000466591 ZNF333Q96JL9 665 aa21.38■■□□□ 1.01
COL7A1-206ENST00000466591 ZNF512BQ96KM6 892 aaPredicted RBP21.38■■□□□ 1.01
COL7A1-206ENST00000466591 CHMP4BQ9H444 224 aaKnown RBP21.38■■□□□ 1.01
COL7A1-206ENST00000466591 PI4KBQ9UBF8 816 aa21.38■■□□□ 1.01
COL7A1-206ENST00000466591 HERC5Q9UII4 1024 aaKnown RBP21.38■■□□□ 1.01
COL7A1-206ENST00000466591 DBNLQ9UJU6 430 aaKnown RBP21.38■■□□□ 1.01
COL7A1-206ENST00000466591 MAST2Q6P0Q8 1798 aa21.38■■□□□ 1.01
COL7A1-206ENST00000466591 HLA-DOAP06340 250 aa21.37■■□□□ 1.01
COL7A1-206ENST00000466591 CYP7A1P22680 504 aa21.37■■□□□ 1.01
COL7A1-206ENST00000466591 MAP3K10Q02779 954 aa21.37■■□□□ 1.01
COL7A1-206ENST00000466591 PABPC4Q13310 644 aaKnown RBP eCLIP21.37■■□□□ 1.01
COL7A1-206ENST00000466591 CCDC84Q86UT8 332 aaPredicted RBP21.37■■□□□ 1.01
COL7A1-206ENST00000466591 TBC1D2Q9BYX2 928 aa21.37■■□□□ 1.01
COL7A1-206ENST00000466591 TLR7Q9NYK1 1049 aaKnown RBP21.37■■□□□ 1.01
COL7A1-206ENST00000466591 EN2P19622 333 aaPredicted RBP21.36■■□□□ 1.01
COL7A1-206ENST00000466591 USP5P45974 858 aa21.36■■□□□ 1.01
COL7A1-206ENST00000466591 MAP3K12Q12852 859 aa21.36■■□□□ 1.01
COL7A1-206ENST00000466591 GPAT2Q6NUI2 795 aa21.36■■□□□ 1.01
COL7A1-206ENST00000466591 ZNF280CQ8ND82 737 aa21.36■■□□□ 1.01
COL7A1-206ENST00000466591 TRIM47Q96LD4 638 aa21.36■■□□□ 1.01
COL7A1-206ENST00000466591 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.36■■□□□ 1.01
COL7A1-206ENST00000466591 SRRDQ9UH36 339 aa21.36■■□□□ 1.01
COL7A1-206ENST00000466591 COL2A1P02458 1487 aaPredicted RBP21.36■■□□□ 1.01
COL7A1-206ENST00000466591 IGSF3O75054 1194 aa21.35■■□□□ 1.01
COL7A1-206ENST00000466591 OSBPP22059 807 aa21.35■■□□□ 1.01
COL7A1-206ENST00000466591 SPP2Q13103 211 aa21.35■■□□□ 1.01
COL7A1-206ENST00000466591 MOGSQ13724 837 aa21.35■■□□□ 1.01
COL7A1-206ENST00000466591 CERS3Q8IU89 383 aa21.35■■□□□ 1.01
COL7A1-206ENST00000466591 EAF2Q96CJ1 260 aaPredicted RBP21.35■■□□□ 1.01
COL7A1-206ENST00000466591 PIH1D3Q9NQM4 214 aaKnown RBP21.35■■□□□ 1.01
COL7A1-206ENST00000466591 SAP30BPQ9UHR5 308 aaKnown RBP21.35■■□□□ 1.01
COL7A1-206ENST00000466591 TAOK2Q9UL54 1235 aa21.35■■□□□ 1.01
COL7A1-206ENST00000466591 DDX19BQ9UMR2 479 aa21.35■■□□□ 1.01
COL7A1-206ENST00000466591 AGTPBP1Q9UPW5 1226 aa21.35■■□□□ 1.01
COL7A1-206ENST00000466591 SLC45A1Q9Y2W3 748 aa21.35■■□□□ 1.01
COL7A1-206ENST00000466591 USP17L5A8MUK1 530 aa21.34■■□□□ 1.01
COL7A1-206ENST00000466591 CAP2P40123 477 aa21.34■■□□□ 1.01
COL7A1-206ENST00000466591 CLASRPQ8N2M8 674 aaKnown RBP21.34■■□□□ 1.01
COL7A1-206ENST00000466591 MAGEB6Q8N7X4 407 aa21.34■■□□□ 1.01
COL7A1-206ENST00000466591 IL1RAPL2Q9NP60 686 aa21.34■■□□□ 1.01
COL7A1-206ENST00000466591 FLT1P17948 1338 aa21.33■■□□□ 1.01
COL7A1-206ENST00000466591 TNPO2O14787 897 aaKnown RBP21.33■■□□□ 1.01
COL7A1-206ENST00000466591 IFIT2P09913 472 aaKnown RBP21.33■■□□□ 1.01
COL7A1-206ENST00000466591 GRK4P32298 578 aa21.33■■□□□ 1.01
COL7A1-206ENST00000466591 PPP4CP60510 307 aa21.33■■□□□ 1.01
COL7A1-206ENST00000466591 UBXN2AP68543 259 aa21.33■■□□□ 1.01
COL7A1-206ENST00000466591 MIGA1Q8NAN2 632 aa21.33■■□□□ 1.01
COL7A1-206ENST00000466591 TMOD4Q9NZQ9 345 aa21.33■■□□□ 1.01
COL7A1-206ENST00000466591 COG6Q9Y2V7 657 aa21.33■■□□□ 1.01
COL7A1-206ENST00000466591 ADGRA2Q96PE1 1338 aa21.32■■□□□ 1
COL7A1-206ENST00000466591 ZSWIM8A7E2V4 1837 aa21.32■■□□□ 1
COL7A1-206ENST00000466591 ASNSP08243 561 aa21.32■■□□□ 1
COL7A1-206ENST00000466591 HMGCS2P54868 508 aa21.32■■□□□ 1
COL7A1-206ENST00000466591 FOXP4Q8IVH2 680 aaPredicted RBP21.32■■□□□ 1
COL7A1-206ENST00000466591 PROCA1Q8NCQ7 364 aaPredicted RBP21.32■■□□□ 1
COL7A1-206ENST00000466591 PALD1Q9ULE6 856 aa21.32■■□□□ 1
COL7A1-206ENST00000466591 PDE4DIPQ5VU43 2346 aa21.31■■□□□ 1
COL7A1-206ENST00000466591 BCRP11274 1271 aa21.31■■□□□ 1
COL7A1-206ENST00000466591 DYNLL1P63167 89 aaKnown RBP21.31■■□□□ 1
COL7A1-206ENST00000466591 PRKCZQ05513 592 aa21.31■■□□□ 1
COL7A1-206ENST00000466591 TTF1Q15361 905 aaPredicted RBP21.31■■□□□ 1
COL7A1-206ENST00000466591 ADGRA1Q86SQ6 560 aa21.31■■□□□ 1
COL7A1-206ENST00000466591 ANKRD13CQ8N6S4 541 aa21.31■■□□□ 1
COL7A1-206ENST00000466591 COA7Q96BR5 231 aa21.31■■□□□ 1
COL7A1-206ENST00000466591 KIF1BPQ96EK5 621 aa21.31■■□□□ 1
COL7A1-206ENST00000466591 RCAN3Q9UKA8 241 aa21.31■■□□□ 1
COL7A1-206ENST00000466591 IRX3P78415 501 aaPredicted RBP21.3■■□□□ 1
COL7A1-206ENST00000466591 TREML2Q5T2D2 321 aa21.3■■□□□ 1
COL7A1-206ENST00000466591 RPAP2Q8IXW5 612 aaPredicted RBP21.3■■□□□ 1
COL7A1-206ENST00000466591 RHPN1Q8TCX5 695 aa21.3■■□□□ 1
COL7A1-206ENST00000466591 NDUFB9Q9Y6M9 179 aa21.3■■□□□ 1
COL7A1-206ENST00000466591 RBBP6Q7Z6E9 1792 aaKnown RBP21.29■■□□□ 1
COL7A1-206ENST00000466591 GDF11O95390 407 aa21.29■■□□□ 1
COL7A1-206ENST00000466591 CTGFP29279 349 aa21.29■■□□□ 1
COL7A1-206ENST00000466591 MTMR2Q13614 643 aa21.29■■□□□ 1
COL7A1-206ENST00000466591 SLAIN1Q8ND83 568 aa21.29■■□□□ 1
COL7A1-206ENST00000466591 GCC1Q96CN9 775 aa21.29■■□□□ 1
COL7A1-206ENST00000466591 DNAJC2Q99543 621 aaKnown RBP21.29■■□□□ 1
COL7A1-206ENST00000466591 GCLCP48506 637 aaPredicted RBP21.28■■□□□ 1
COL7A1-206ENST00000466591 CCAR1Q8IX12 1150 aaKnown RBP21.28■■□□□ 1
COL7A1-206ENST00000466591 NKX2-3Q8TAU0 364 aa21.28■■□□□ 1
COL7A1-206ENST00000466591 ATAD5Q96QE3 1844 aa21.27■■□□□ 1
COL7A1-206ENST00000466591 TMED8Q6PL24 325 aaPredicted RBP21.27■■□□□ 1
COL7A1-206ENST00000466591 TTC6Q86TZ1 520 aa21.27■■□□□ 1
COL7A1-206ENST00000466591 FEZ1Q99689 392 aa21.27■■□□□ 1
COL7A1-206ENST00000466591 RNF208Q9H0X6 261 aa21.27■■□□□ 1
COL7A1-206ENST00000466591 TNRC18O15417 2968 aaPredicted RBP21.26■□□□□ 0.99
COL7A1-206ENST00000466591 MAGEB6P1A0A0J9YX57 407 aa21.26■□□□□ 0.99
COL7A1-206ENST00000466591 ADCY3O60266 1144 aa21.26■□□□□ 0.99
COL7A1-206ENST00000466591 RAB11FIP3O75154 756 aa21.26■□□□□ 0.99
COL7A1-206ENST00000466591 FLT3LGP49771 235 aa21.26■□□□□ 0.99
COL7A1-206ENST00000466591 ANTXR1Q9H6X2 564 aa21.26■□□□□ 0.99
COL7A1-206ENST00000466591 CWC22Q9HCG8 908 aaKnown RBP21.26■□□□□ 0.99
COL7A1-206ENST00000466591 GINM1Q9NU53 330 aa21.26■□□□□ 0.99
COL7A1-206ENST00000466591 GOLIM4O00461 696 aa21.25■□□□□ 0.99
COL7A1-206ENST00000466591 POLR3DP05423 398 aaPredicted RBP21.25■□□□□ 0.99
COL7A1-206ENST00000466591 CCL5P13501 91 aa21.25■□□□□ 0.99
COL7A1-206ENST00000466591 BACE1P56817 501 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms