RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 TRIM75PA6NK02 468 aa12.21□□□□□ -0.45
USP39-212ENST00000465514 PHF20L1A8MW92 1017 aa12.21□□□□□ -0.45
USP39-212ENST00000465514 FRAT2O75474 233 aaPredicted RBP12.21□□□□□ -0.45
USP39-212ENST00000465514 SMAD3P84022 425 aaKnown RBP12.21□□□□□ -0.45
USP39-212ENST00000465514 NFIAQ12857 509 aa12.21□□□□□ -0.45
USP39-212ENST00000465514 TREML2Q5T2D2 321 aa12.21□□□□□ -0.45
USP39-212ENST00000465514 VPS37DQ86XT2 251 aa12.21□□□□□ -0.45
USP39-212ENST00000465514 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.21□□□□□ -0.45
USP39-212ENST00000465514 UTYO14607 1347 aa12.2□□□□□ -0.46
USP39-212ENST00000465514 MROH5Q6ZUA9 1318 aa12.2□□□□□ -0.46
USP39-212ENST00000465514 HHIPL2Q6UWX4 724 aa12.2□□□□□ -0.46
USP39-212ENST00000465514 MRPL50Q8N5N7 158 aaKnown RBP12.2□□□□□ -0.46
USP39-212ENST00000465514 MRIQ9BWK5 157 aa12.2□□□□□ -0.46
USP39-212ENST00000465514 BICC1Q9H694 974 aaKnown RBP12.2□□□□□ -0.46
USP39-212ENST00000465514 PNMA3Q9UL41 463 aa12.2□□□□□ -0.46
USP39-212ENST00000465514 REV3LO60673 3130 aa12.2□□□□□ -0.46
USP39-212ENST00000465514 TCF20Q9UGU0 1960 aaKnown RBP12.19□□□□□ -0.46
USP39-212ENST00000465514 XIRP2A4UGR9 3374 aa12.19□□□□□ -0.46
USP39-212ENST00000465514 MYH2Q9UKX2 1941 aa12.19□□□□□ -0.46
USP39-212ENST00000465514 ZNF521Q96K83 1311 aa12.19□□□□□ -0.46
USP39-212ENST00000465514 CYP2B6P20813 491 aa12.19□□□□□ -0.46
USP39-212ENST00000465514 CCND3P30281 292 aaPredicted RBP12.19□□□□□ -0.46
USP39-212ENST00000465514 CACNB2Q08289 660 aaPredicted RBP12.19□□□□□ -0.46
USP39-212ENST00000465514 LRRC24Q50LG9 513 aa12.19□□□□□ -0.46
USP39-212ENST00000465514 LHX8Q68G74 356 aa12.19□□□□□ -0.46
USP39-212ENST00000465514 CDC42EP5Q6NZY7 148 aa12.19□□□□□ -0.46
USP39-212ENST00000465514 FBXO33Q7Z6M2 555 aa12.19□□□□□ -0.46
USP39-212ENST00000465514 CCDC84Q86UT8 332 aaPredicted RBP12.19□□□□□ -0.46
USP39-212ENST00000465514 ANKRD44Q8N8A2 993 aa12.19□□□□□ -0.46
USP39-212ENST00000465514 ADAMTS19Q8TE59 1207 aa12.19□□□□□ -0.46
USP39-212ENST00000465514 SENP6Q9GZR1 1112 aaPredicted RBP12.19□□□□□ -0.46
USP39-212ENST00000465514 FAM198AQ9UFP1 575 aa12.19□□□□□ -0.46
USP39-212ENST00000465514 PRKAG2Q9UGJ0 569 aa12.19□□□□□ -0.46
USP39-212ENST00000465514 GCLCP48506 637 aaPredicted RBP12.18□□□□□ -0.46
USP39-212ENST00000465514 ATN1P54259 1190 aaPredicted RBP12.18□□□□□ -0.46
USP39-212ENST00000465514 RABL6Q3YEC7 729 aaPredicted RBP12.18□□□□□ -0.46
USP39-212ENST00000465514 METTL24Q5JXM2 366 aa12.18□□□□□ -0.46
USP39-212ENST00000465514 ZFPM1Q8IX07 1006 aa12.18□□□□□ -0.46
USP39-212ENST00000465514 DAGLAQ9Y4D2 1042 aa12.18□□□□□ -0.46
USP39-212ENST00000465514 SYNGAP1Q96PV0 1343 aa12.17□□□□□ -0.46
USP39-212ENST00000465514 MUC6Q6W4X9 2439 aa12.17□□□□□ -0.46
USP39-212ENST00000465514 ATXN8OSP0DMR3 200 aa12.17□□□□□ -0.46
USP39-212ENST00000465514 ZKSCAN1P17029 563 aaPredicted RBP12.17□□□□□ -0.46
USP39-212ENST00000465514 SUGT1Q9Y2Z0 365 aa12.17□□□□□ -0.46
USP39-212ENST00000465514 PTPRCP08575 1304 aa12.16□□□□□ -0.46
USP39-212ENST00000465514 PDE8BO95263 885 aa12.16□□□□□ -0.46
USP39-212ENST00000465514 SLURP2P0DP57 97 aa12.16□□□□□ -0.46
USP39-212ENST00000465514 RTP1P59025 263 aa12.16□□□□□ -0.46
USP39-212ENST00000465514 GRIN2CQ14957 1233 aa12.16□□□□□ -0.46
USP39-212ENST00000465514 DIXDC1Q155Q3 683 aa12.16□□□□□ -0.46
USP39-212ENST00000465514 CAVIN4Q5BKX8 364 aa12.16□□□□□ -0.46
USP39-212ENST00000465514 VGLL2Q8N8G2 317 aa12.16□□□□□ -0.46
USP39-212ENST00000465514 PROCA1Q8NCQ7 364 aaPredicted RBP12.16□□□□□ -0.46
USP39-212ENST00000465514 KLHDC4Q8TBB5 520 aa12.16□□□□□ -0.46
USP39-212ENST00000465514 SSH1Q8WYL5 1049 aa12.16□□□□□ -0.46
USP39-212ENST00000465514 UHRF1Q96T88 793 aaPredicted RBP12.16□□□□□ -0.46
USP39-212ENST00000465514 USP44Q9H0E7 712 aa12.16□□□□□ -0.46
USP39-212ENST00000465514 LRRFIP2Q9Y608 721 aaKnown RBP12.16□□□□□ -0.46
USP39-212ENST00000465514 CHD9Q3L8U1 2897 aa12.16□□□□□ -0.46
USP39-212ENST00000465514 XRCC5P13010 732 aaKnown RBP12.15□□□□□ -0.46
USP39-212ENST00000465514 CCL14Q16627 93 aa12.15□□□□□ -0.46
USP39-212ENST00000465514 ATXN2LQ8WWM7 1075 aaKnown RBP12.15□□□□□ -0.46
USP39-212ENST00000465514 SOCS4Q8WXH5 440 aa12.15□□□□□ -0.46
USP39-212ENST00000465514 BADQ92934 168 aa12.15□□□□□ -0.46
USP39-212ENST00000465514 ASB2Q96Q27 587 aa12.15□□□□□ -0.46
USP39-212ENST00000465514 NUDT12Q9BQG2 462 aa12.15□□□□□ -0.46
USP39-212ENST00000465514 ASCC2Q9H1I8 757 aaPredicted RBP12.15□□□□□ -0.46
USP39-212ENST00000465514 PRDM5Q9NQX1 630 aaPredicted RBP12.15□□□□□ -0.46
USP39-212ENST00000465514 THEGQ9P2T0 379 aa12.15□□□□□ -0.46
USP39-212ENST00000465514 ATP11BQ9Y2G3 1177 aa12.15□□□□□ -0.46
USP39-212ENST00000465514 PLXNA1Q9UIW2 1896 aa12.14□□□□□ -0.47
USP39-212ENST00000465514 E9PSI1 815 aa12.14□□□□□ -0.47
USP39-212ENST00000465514 PEX10O60683 326 aa12.14□□□□□ -0.47
USP39-212ENST00000465514 CTNND1O60716 968 aaKnown RBP12.14□□□□□ -0.47
USP39-212ENST00000465514 TRMT44Q8IYL2 757 aaKnown RBP12.14□□□□□ -0.47
USP39-212ENST00000465514 PPM1EQ8WY54 764 aa12.14□□□□□ -0.47
USP39-212ENST00000465514 USP40Q9NVE5 1235 aa12.14□□□□□ -0.47
USP39-212ENST00000465514 MORF4L1Q9UBU8 362 aa12.14□□□□□ -0.47
USP39-212ENST00000465514 IFIT1P09914 478 aaKnown RBP12.13□□□□□ -0.47
USP39-212ENST00000465514 FGFR2P21802 821 aa12.13□□□□□ -0.47
USP39-212ENST00000465514 RGS3P49796 1198 aa12.13□□□□□ -0.47
USP39-212ENST00000465514 HMGCS2P54868 508 aa12.13□□□□□ -0.47
USP39-212ENST00000465514 SLFN5Q08AF3 891 aa12.13□□□□□ -0.47
USP39-212ENST00000465514 PABPC4Q13310 644 aaKnown RBP eCLIP12.13□□□□□ -0.474e-8■■■□□ 15.5
USP39-212ENST00000465514 PDE3AQ14432 1141 aa12.13□□□□□ -0.47
USP39-212ENST00000465514 PUM3Q15397 648 aaKnown RBP12.13□□□□□ -0.47
USP39-212ENST00000465514 SH3BP5LQ7L8J4 393 aa12.13□□□□□ -0.47
USP39-212ENST00000465514 ZSCAN29Q8IWY8 852 aaPredicted RBP12.13□□□□□ -0.47
USP39-212ENST00000465514 RNPC3Q96LT9 517 aaKnown RBP12.13□□□□□ -0.47
USP39-212ENST00000465514 C1QTNF1Q9BXJ1 281 aa12.13□□□□□ -0.47
USP39-212ENST00000465514 HCN4Q9Y3Q4 1203 aa12.13□□□□□ -0.47
USP39-212ENST00000465514 RFX7Q2KHR2 1363 aa12.13□□□□□ -0.47
USP39-212ENST00000465514 CHD7Q9P2D1 2997 aa12.12□□□□□ -0.47
USP39-212ENST00000465514 EYA2O00167 538 aa12.12□□□□□ -0.47
USP39-212ENST00000465514 DNAJB2P25686 324 aa12.12□□□□□ -0.47
USP39-212ENST00000465514 RFX5P48382 616 aaPredicted RBP12.12□□□□□ -0.47
USP39-212ENST00000465514 SPP2Q13103 211 aa12.12□□□□□ -0.47
USP39-212ENST00000465514 APBA2Q99767 749 aa12.12□□□□□ -0.47
USP39-212ENST00000465514 ARIH1Q9Y4X5 557 aaPredicted RBP12.12□□□□□ -0.47
USP39-212ENST00000465514 KIF16BQ96L93 1317 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms