RNA–Protein interactions for RNA: ENST00000463818.1

SF3A1-205, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-205ENST00000463818 ZNF333Q96JL9 665 aa23.03■■□□□ 1.28
SF3A1-205ENST00000463818 DHX36Q9H2U1 1008 aaKnown RBP23.03■■□□□ 1.28
SF3A1-205ENST00000463818 IL1RAPL2Q9NP60 686 aa23.03■■□□□ 1.28
SF3A1-205ENST00000463818 RCAN3Q9UKA8 241 aa23.03■■□□□ 1.28
SF3A1-205ENST00000463818 DDX19BQ9UMR2 479 aa23.03■■□□□ 1.28
SF3A1-205ENST00000463818 NDUFB9Q9Y6M9 179 aa23.03■■□□□ 1.28
SF3A1-205ENST00000463818 IDH1O75874 414 aaKnown RBP23.02■■□□□ 1.28
SF3A1-205ENST00000463818 FMNL1O95466 1100 aaPredicted RBP23.02■■□□□ 1.28
SF3A1-205ENST00000463818 BCRP11274 1271 aa23.02■■□□□ 1.28
SF3A1-205ENST00000463818 PRMT2P55345 433 aa23.02■■□□□ 1.28
SF3A1-205ENST00000463818 DYNLL1P63167 89 aaKnown RBP23.02■■□□□ 1.28
SF3A1-205ENST00000463818 TRIM47Q96LD4 638 aa23.02■■□□□ 1.28
SF3A1-205ENST00000463818 TMEM106CQ9BVX2 250 aa23.02■■□□□ 1.28
SF3A1-205ENST00000463818 ZBTB40Q9NUA8 1239 aa23.02■■□□□ 1.28
SF3A1-205ENST00000463818 HERC5Q9UII4 1024 aaKnown RBP23.02■■□□□ 1.28
SF3A1-205ENST00000463818 COL2A1P02458 1487 aaPredicted RBP23.01■■□□□ 1.27
SF3A1-205ENST00000463818 HOXD10P28358 340 aa23.01■■□□□ 1.27
SF3A1-205ENST00000463818 SPP2Q13103 211 aa23.01■■□□□ 1.27
SF3A1-205ENST00000463818 FOXP4Q8IVH2 680 aaPredicted RBP23.01■■□□□ 1.27
SF3A1-205ENST00000463818 ANTXR1Q9H6X2 564 aa23.01■■□□□ 1.27
SF3A1-205ENST00000463818 SLC45A1Q9Y2W3 748 aa23.01■■□□□ 1.27
SF3A1-205ENST00000463818 APBB1O00213 710 aa23■■□□□ 1.27
SF3A1-205ENST00000463818 EN2P19622 333 aaPredicted RBP23■■□□□ 1.27
SF3A1-205ENST00000463818 SIRT2Q8IXJ6 389 aa23■■□□□ 1.27
SF3A1-205ENST00000463818 SH3TC2Q8TF17 1288 aa23■■□□□ 1.27
SF3A1-205ENST00000463818 SRRDQ9UH36 339 aa23■■□□□ 1.27
SF3A1-205ENST00000463818 PALD1Q9ULE6 856 aa23■■□□□ 1.27
SF3A1-205ENST00000463818 HMMRO75330 724 aa22.99■■□□□ 1.27
SF3A1-205ENST00000463818 OSBPP22059 807 aa22.99■■□□□ 1.27
SF3A1-205ENST00000463818 MAGEB6Q8N7X4 407 aa22.99■■□□□ 1.27
SF3A1-205ENST00000463818 ZNF280CQ8ND82 737 aa22.99■■□□□ 1.27
SF3A1-205ENST00000463818 FLT1P17948 1338 aa22.99■■□□□ 1.27
SF3A1-205ENST00000463818 DOCK2Q92608 1830 aa22.98■■□□□ 1.27
SF3A1-205ENST00000463818 USP17L5A8MUK1 530 aa22.98■■□□□ 1.27
SF3A1-205ENST00000463818 MYCP01106 439 aaPredicted RBP22.98■■□□□ 1.27
SF3A1-205ENST00000463818 MAP3K12Q12852 859 aa22.98■■□□□ 1.27
SF3A1-205ENST00000463818 CLASRPQ8N2M8 674 aaKnown RBP22.98■■□□□ 1.27
SF3A1-205ENST00000463818 MIGA1Q8NAN2 632 aa22.98■■□□□ 1.27
SF3A1-205ENST00000463818 KIF1BPQ96EK5 621 aa22.98■■□□□ 1.27
SF3A1-205ENST00000463818 TBC1D2Q9BYX2 928 aa22.98■■□□□ 1.27
SF3A1-205ENST00000463818 CHMP4BQ9H444 224 aaKnown RBP22.98■■□□□ 1.27
SF3A1-205ENST00000463818 SAP30BPQ9UHR5 308 aaKnown RBP22.98■■□□□ 1.27
SF3A1-205ENST00000463818 AGTPBP1Q9UPW5 1226 aa22.98■■□□□ 1.27
SF3A1-205ENST00000463818 PDE4DIPQ5VU43 2346 aa22.97■■□□□ 1.27
SF3A1-205ENST00000463818 SLC4A8Q2Y0W8 1093 aa22.97■■□□□ 1.27
SF3A1-205ENST00000463818 TREML2Q5T2D2 321 aa22.97■■□□□ 1.27
SF3A1-205ENST00000463818 METTL16Q86W50 562 aaKnown RBP22.97■■□□□ 1.27
SF3A1-205ENST00000463818 TNRC18O15417 2968 aaPredicted RBP22.97■■□□□ 1.27
SF3A1-205ENST00000463818 HTTP42858 3142 aa22.96■■□□□ 1.27
SF3A1-205ENST00000463818 FCGRTP55899 365 aa22.96■■□□□ 1.27
SF3A1-205ENST00000463818 CRACR2BQ8N4Y2 399 aaPredicted RBP22.96■■□□□ 1.27
SF3A1-205ENST00000463818 PROCA1Q8NCQ7 364 aaPredicted RBP22.96■■□□□ 1.27
SF3A1-205ENST00000463818 RAET1EQ8TD07 263 aa22.96■■□□□ 1.27
SF3A1-205ENST00000463818 SMCR8Q8TEV9 937 aaPredicted RBP22.96■■□□□ 1.27
SF3A1-205ENST00000463818 TRIM34Q9BYJ4 488 aa22.96■■□□□ 1.27
SF3A1-205ENST00000463818 BCL11AQ9H165 835 aa22.96■■□□□ 1.27
SF3A1-205ENST00000463818 DNAJC18Q9H819 358 aa22.96■■□□□ 1.27
SF3A1-205ENST00000463818 RAB11FIP3O75154 756 aa22.95■■□□□ 1.26
SF3A1-205ENST00000463818 IFIT2P09913 472 aaKnown RBP22.95■■□□□ 1.26
SF3A1-205ENST00000463818 HMGCS2P54868 508 aa22.95■■□□□ 1.26
SF3A1-205ENST00000463818 JAG1P78504 1218 aa22.95■■□□□ 1.26
SF3A1-205ENST00000463818 KIAA0100Q14667 2235 aaKnown RBP22.95■■□□□ 1.26
SF3A1-205ENST00000463818 PRPF38BQ5VTL8 546 aaKnown RBP22.95■■□□□ 1.26
SF3A1-205ENST00000463818 CERS3Q8IU89 383 aa22.95■■□□□ 1.26
SF3A1-205ENST00000463818 AS3MTQ9HBK9 375 aa22.95■■□□□ 1.26
SF3A1-205ENST00000463818 MYPNQ86TC9 1320 aa22.94■■□□□ 1.26
SF3A1-205ENST00000463818 HLA-DOAP06340 250 aa22.94■■□□□ 1.26
SF3A1-205ENST00000463818 USP5P45974 858 aa22.94■■□□□ 1.26
SF3A1-205ENST00000463818 C20orf194Q5TEA3 1177 aa22.94■■□□□ 1.26
SF3A1-205ENST00000463818 TMED8Q6PL24 325 aaPredicted RBP22.94■■□□□ 1.26
SF3A1-205ENST00000463818 WDR18Q9BV38 432 aa22.94■■□□□ 1.26
SF3A1-205ENST00000463818 ASNSP08243 561 aa22.93■■□□□ 1.26
SF3A1-205ENST00000463818 GRK4P32298 578 aa22.93■■□□□ 1.26
SF3A1-205ENST00000463818 PRKCZQ05513 592 aa22.93■■□□□ 1.26
SF3A1-205ENST00000463818 TTF1Q15361 905 aaPredicted RBP22.93■■□□□ 1.26
SF3A1-205ENST00000463818 SH3D19Q5HYK7 790 aa22.93■■□□□ 1.26
SF3A1-205ENST00000463818 PNMA3Q9UL41 463 aa22.93■■□□□ 1.26
SF3A1-205ENST00000463818 GDF11O95390 407 aa22.92■■□□□ 1.26
SF3A1-205ENST00000463818 PDE3AQ14432 1141 aa22.92■■□□□ 1.26
SF3A1-205ENST00000463818 ANKRD13CQ8N6S4 541 aa22.92■■□□□ 1.26
SF3A1-205ENST00000463818 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.92■■□□□ 1.26
SF3A1-205ENST00000463818 GINM1Q9NU53 330 aa22.92■■□□□ 1.26
SF3A1-205ENST00000463818 GABRQQ9UN88 632 aa22.92■■□□□ 1.26
SF3A1-205ENST00000463818 BACE1P56817 501 aa22.91■■□□□ 1.26
SF3A1-205ENST00000463818 PABPC4Q13310 644 aaKnown RBP eCLIP22.91■■□□□ 1.26
SF3A1-205ENST00000463818 MTFR1Q15390 333 aa22.91■■□□□ 1.26
SF3A1-205ENST00000463818 SHROOM1Q2M3G4 852 aaPredicted RBP22.91■■□□□ 1.26
SF3A1-205ENST00000463818 ZSWIM8A7E2V4 1837 aa22.91■■□□□ 1.26
SF3A1-205ENST00000463818 DOCK1Q14185 1865 aa22.9■■□□□ 1.26
SF3A1-205ENST00000463818 GOLIM4O00461 696 aa22.9■■□□□ 1.26
SF3A1-205ENST00000463818 SLC9C2Q5TAH2 1124 aa22.9■■□□□ 1.26
SF3A1-205ENST00000463818 DNAJC2Q99543 621 aaKnown RBP22.9■■□□□ 1.26
SF3A1-205ENST00000463818 ASCC2Q9H1I8 757 aaPredicted RBP22.9■■□□□ 1.26
SF3A1-205ENST00000463818 BIN2Q9UBW5 565 aaPredicted RBP22.9■■□□□ 1.26
SF3A1-205ENST00000463818 MAGEB6P1A0A0J9YX57 407 aa22.89■■□□□ 1.25
SF3A1-205ENST00000463818 PDE6AP16499 860 aa22.89■■□□□ 1.25
SF3A1-205ENST00000463818 MTMR2Q13614 643 aa22.89■■□□□ 1.25
SF3A1-205ENST00000463818 TTC6Q86TZ1 520 aa22.89■■□□□ 1.25
SF3A1-205ENST00000463818 RIOK1Q9BRS2 568 aaKnown RBP22.89■■□□□ 1.25
SF3A1-205ENST00000463818 TMOD4Q9NZQ9 345 aa22.89■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms