RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 CAMTA2O94983 1202 aa14.27□□□□□ -0.13
HDAC4-208ENST00000463007 OAS2P29728 719 aaKnown RBP14.27□□□□□ -0.13
HDAC4-208ENST00000463007 COL24A1Q17RW2 1714 aa14.27□□□□□ -0.13
HDAC4-208ENST00000463007 LRRFIP1Q32MZ4 808 aaKnown RBP14.27□□□□□ -0.13
HDAC4-208ENST00000463007 WWC2Q6AWC2 1192 aa14.27□□□□□ -0.13
HDAC4-208ENST00000463007 TOGARAM2Q6ZUX3 1019 aa14.27□□□□□ -0.13
HDAC4-208ENST00000463007 CCDC12Q8WUD4 166 aaPredicted RBP14.27□□□□□ -0.13
HDAC4-208ENST00000463007 ATRIPQ8WXE1 791 aa14.27□□□□□ -0.13
HDAC4-208ENST00000463007 PCDHA5Q9Y5H7 936 aa14.27□□□□□ -0.13
HDAC4-208ENST00000463007 B4E1Z4 1266 aa14.26□□□□□ -0.13
HDAC4-208ENST00000463007 GPAA1O43292 621 aa14.26□□□□□ -0.13
HDAC4-208ENST00000463007 H2AFXP16104 143 aaPredicted RBP14.26□□□□□ -0.13
HDAC4-208ENST00000463007 CASP1P29466 404 aa14.26□□□□□ -0.13
HDAC4-208ENST00000463007 CASQ1P31415 396 aa14.26□□□□□ -0.13
HDAC4-208ENST00000463007 PDE4BQ07343 736 aa14.26□□□□□ -0.13
HDAC4-208ENST00000463007 MARCH10Q8NA82 808 aaPredicted RBP14.26□□□□□ -0.13
HDAC4-208ENST00000463007 IMPACTQ9P2X3 320 aa14.26□□□□□ -0.13
HDAC4-208ENST00000463007 TRMT112Q9UI30 125 aaKnown RBP14.26□□□□□ -0.13
HDAC4-208ENST00000463007 ZMYM6O95789 1325 aa14.26□□□□□ -0.13
HDAC4-208ENST00000463007 TRDNQ13061 729 aa14.26□□□□□ -0.13
HDAC4-208ENST00000463007 UBE3CQ15386 1083 aa14.26□□□□□ -0.13
HDAC4-208ENST00000463007 KRBA2Q6ZNG9 492 aa14.26□□□□□ -0.13
HDAC4-208ENST00000463007 TRIM34Q9BYJ4 488 aa14.26□□□□□ -0.13
HDAC4-208ENST00000463007 TBC1D2BQ9UPU7 963 aa14.26□□□□□ -0.13
HDAC4-208ENST00000463007 SPATA31A5Q5VU36 1347 aa14.26□□□□□ -0.13
HDAC4-208ENST00000463007 SPATA31A7Q8IWB4 1347 aa14.26□□□□□ -0.13
HDAC4-208ENST00000463007 SASH3O75995 380 aa14.26□□□□□ -0.13
HDAC4-208ENST00000463007 LMAN1P49257 510 aa14.26□□□□□ -0.13
HDAC4-208ENST00000463007 MYL5Q02045 173 aa14.26□□□□□ -0.13
HDAC4-208ENST00000463007 GRIN1Q05586 938 aa14.26□□□□□ -0.13
HDAC4-208ENST00000463007 ITPK1Q13572 414 aa14.26□□□□□ -0.13
HDAC4-208ENST00000463007 SUSD4Q5VX71 490 aa14.26□□□□□ -0.13
HDAC4-208ENST00000463007 CCDC102BQ68D86 513 aa14.26□□□□□ -0.13
HDAC4-208ENST00000463007 STAMQ92783 540 aa14.26□□□□□ -0.13
HDAC4-208ENST00000463007 SMARCE1Q969G3 411 aa14.26□□□□□ -0.13
HDAC4-208ENST00000463007 KCNJ14Q9UNX9 436 aa14.26□□□□□ -0.13
HDAC4-208ENST00000463007 PPP2R2CQ9Y2T4 447 aa14.26□□□□□ -0.13
HDAC4-208ENST00000463007 KIF23Q02241 960 aaPredicted RBP14.25□□□□□ -0.13
HDAC4-208ENST00000463007 AXDND1Q5T1B0 1012 aaPredicted RBP14.25□□□□□ -0.13
HDAC4-208ENST00000463007 SHC4Q6S5L8 630 aa14.25□□□□□ -0.13
HDAC4-208ENST00000463007 MROH5Q6ZUA9 1318 aa14.25□□□□□ -0.13
HDAC4-208ENST00000463007 BAZ2BQ9UIF8 2168 aaKnown RBP14.25□□□□□ -0.13
HDAC4-208ENST00000463007 DHX16O60231 1041 aaKnown RBP14.25□□□□□ -0.13
HDAC4-208ENST00000463007 PHKA1P46020 1223 aa14.25□□□□□ -0.13
HDAC4-208ENST00000463007 METAP2P50579 478 aaKnown RBP eCLIP14.25□□□□□ -0.13
HDAC4-208ENST00000463007 KRT40Q6A162 431 aa14.25□□□□□ -0.13
HDAC4-208ENST00000463007 FOXP4Q8IVH2 680 aaPredicted RBP14.25□□□□□ -0.13
HDAC4-208ENST00000463007 HINFPQ9BQA5 517 aa14.25□□□□□ -0.13
HDAC4-208ENST00000463007 SLC26A6Q9BXS9 759 aa14.25□□□□□ -0.13
HDAC4-208ENST00000463007 L2HGDHQ9H9P8 463 aa14.25□□□□□ -0.13
HDAC4-208ENST00000463007 CCDC87Q9NVE4 849 aa14.25□□□□□ -0.13
HDAC4-208ENST00000463007 A0A0G2JS52 829 aa14.24□□□□□ -0.13
HDAC4-208ENST00000463007 hCG_1642624A0A1W2PR95 340 aa14.24□□□□□ -0.13
HDAC4-208ENST00000463007 ANKRD65E5RJM6 399 aa14.24□□□□□ -0.13
HDAC4-208ENST00000463007 CRKLP46109 303 aaKnown RBP14.24□□□□□ -0.13
HDAC4-208ENST00000463007 TRIM65Q6PJ69 517 aa14.24□□□□□ -0.13
HDAC4-208ENST00000463007 RGS22Q8NE09 1264 aa14.24□□□□□ -0.13
HDAC4-208ENST00000463007 BAG1Q99933 345 aaPredicted RBP14.24□□□□□ -0.13
HDAC4-208ENST00000463007 CALCOCO1Q9P1Z2 691 aa14.24□□□□□ -0.13
HDAC4-208ENST00000463007 PSDA5PKW4 1024 aaPredicted RBP14.24□□□□□ -0.13
HDAC4-208ENST00000463007 NTSR2O95665 410 aa14.24□□□□□ -0.13
HDAC4-208ENST00000463007 AFMP43652 599 aa14.24□□□□□ -0.13
HDAC4-208ENST00000463007 PUM3Q15397 648 aaKnown RBP14.24□□□□□ -0.13
HDAC4-208ENST00000463007 TAF3Q5VWG9 929 aa14.24□□□□□ -0.13
HDAC4-208ENST00000463007 NCOA7Q8NI08 942 aa14.24□□□□□ -0.13
HDAC4-208ENST00000463007 SUGCTQ9HAC7 445 aa14.24□□□□□ -0.13
HDAC4-208ENST00000463007 NFE2L3Q9Y4A8 694 aa14.24□□□□□ -0.13
HDAC4-208ENST00000463007 BARGINQ6ZT62 677 aa14.24□□□□□ -0.13
HDAC4-208ENST00000463007 C10orf67Q8IYJ2 551 aa14.24□□□□□ -0.13
HDAC4-208ENST00000463007 HELBQ8NG08 1087 aaPredicted RBP14.24□□□□□ -0.13
HDAC4-208ENST00000463007 LPIN2Q92539 896 aa14.24□□□□□ -0.13
HDAC4-208ENST00000463007 DHX58Q96C10 678 aa14.24□□□□□ -0.13
HDAC4-208ENST00000463007 HSD3B7Q9H2F3 369 aa14.24□□□□□ -0.13
HDAC4-208ENST00000463007 SAMSN1Q9NSI8 373 aaKnown RBP14.24□□□□□ -0.13
HDAC4-208ENST00000463007 CACNA1SQ13698 1873 aa14.23□□□□□ -0.13
HDAC4-208ENST00000463007 POLR2DO15514 142 aaKnown RBP14.23□□□□□ -0.13
HDAC4-208ENST00000463007 RHOXF2BP0C7M4 288 aa14.23□□□□□ -0.13
HDAC4-208ENST00000463007 PPP2R3AQ06190 1150 aa14.23□□□□□ -0.13
HDAC4-208ENST00000463007 TRIM29Q14134 588 aa14.23□□□□□ -0.13
HDAC4-208ENST00000463007 TTF1Q15361 905 aaPredicted RBP14.23□□□□□ -0.13
HDAC4-208ENST00000463007 CCDC93Q567U6 631 aa14.23□□□□□ -0.13
HDAC4-208ENST00000463007 TBC1D10CQ8IV04 446 aa14.23□□□□□ -0.13
HDAC4-208ENST00000463007 RHOXF2Q9BQY4 288 aa14.23□□□□□ -0.13
HDAC4-208ENST00000463007 POLR3EQ9NVU0 708 aa14.23□□□□□ -0.13
HDAC4-208ENST00000463007 PARP3Q9Y6F1 533 aa14.23□□□□□ -0.13
HDAC4-208ENST00000463007 A0A1W2PQ27 194 aa14.23□□□□□ -0.13
HDAC4-208ENST00000463007 A0A1W2PQ64 194 aa14.23□□□□□ -0.13
HDAC4-208ENST00000463007 A0A1W2PQD8 194 aa14.23□□□□□ -0.13
HDAC4-208ENST00000463007 SNAP23O00161 211 aa14.23□□□□□ -0.13
HDAC4-208ENST00000463007 CMA1P23946 247 aa14.23□□□□□ -0.13
HDAC4-208ENST00000463007 TNNT3P45378 269 aaPredicted RBP14.23□□□□□ -0.13
HDAC4-208ENST00000463007 SMC1AQ14683 1233 aaKnown RBP14.23□□□□□ -0.13
HDAC4-208ENST00000463007 REXO1L1PQ8IX06 675 aa14.23□□□□□ -0.13
HDAC4-208ENST00000463007 SMYD4Q8IYR2 804 aaPredicted RBP14.23□□□□□ -0.13
HDAC4-208ENST00000463007 CNNM1Q9NRU3 951 aa14.23□□□□□ -0.13
HDAC4-208ENST00000463007 KCNH3Q9ULD8 1083 aa14.23□□□□□ -0.13
HDAC4-208ENST00000463007 NEDD4P46934 1319 aa14.22□□□□□ -0.13
HDAC4-208ENST00000463007 VWA3AA6NCI4 1184 aa14.22□□□□□ -0.13
HDAC4-208ENST00000463007 PDE6AP16499 860 aa14.22□□□□□ -0.13
HDAC4-208ENST00000463007 ATL3Q6DD88 541 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms