RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 RNF26Q9BY78 433 aaPredicted RBP7.92□□□□□ -1.14
SYNE1-216ENST00000461872 PRDM10Q9NQV6 1147 aa7.92□□□□□ -1.14
SYNE1-216ENST00000461872 STAT6P42226 847 aa7.92□□□□□ -1.14
SYNE1-216ENST00000461872 U2AF2P26368 475 aaKnown RBP eCLIP7.92□□□□□ -1.14
SYNE1-216ENST00000461872 DNM2P50570 870 aa7.92□□□□□ -1.14
SYNE1-216ENST00000461872 LMNB2Q03252 620 aa7.92□□□□□ -1.14
SYNE1-216ENST00000461872 ARL6IP4Q66PJ3 421 aaKnown RBP7.92□□□□□ -1.14
SYNE1-216ENST00000461872 VTI1AQ96AJ9 217 aa7.92□□□□□ -1.14
SYNE1-216ENST00000461872 EAF2Q96CJ1 260 aaPredicted RBP7.92□□□□□ -1.14
SYNE1-216ENST00000461872 ATP5DP30049 168 aa7.92□□□□□ -1.14
SYNE1-216ENST00000461872 PAK2Q13177 524 aa7.92□□□□□ -1.14
SYNE1-216ENST00000461872 POLR3DP05423 398 aaPredicted RBP7.92□□□□□ -1.14
SYNE1-216ENST00000461872 LIG1P18858 919 aa7.92□□□□□ -1.14
SYNE1-216ENST00000461872 LDHAL6AQ6ZMR3 332 aa7.92□□□□□ -1.14
SYNE1-216ENST00000461872 IL17REQ8NFR9 667 aa7.92□□□□□ -1.14
SYNE1-216ENST00000461872 AK8Q96MA6 479 aa7.92□□□□□ -1.14
SYNE1-216ENST00000461872 SLC26A6Q9BXS9 759 aa7.92□□□□□ -1.14
SYNE1-216ENST00000461872 ZRANB1Q9UGI0 708 aa7.92□□□□□ -1.14
SYNE1-216ENST00000461872 DAAM1Q9Y4D1 1078 aa7.92□□□□□ -1.14
SYNE1-216ENST00000461872 SPEF2Q9C093 1822 aa7.92□□□□□ -1.14
SYNE1-216ENST00000461872 ACTN2P35609 894 aa7.92□□□□□ -1.14
SYNE1-216ENST00000461872 MTIF2P46199 727 aaKnown RBP7.92□□□□□ -1.14
SYNE1-216ENST00000461872 TFCP2Q12800 502 aa7.92□□□□□ -1.14
SYNE1-216ENST00000461872 PUM3Q15397 648 aaKnown RBP7.92□□□□□ -1.14
SYNE1-216ENST00000461872 EMBQ6PCB8 327 aa7.92□□□□□ -1.14
SYNE1-216ENST00000461872 NUP133Q8WUM0 1156 aa7.92□□□□□ -1.14
SYNE1-216ENST00000461872 JADE2Q9NQC1 790 aa7.92□□□□□ -1.14
SYNE1-216ENST00000461872 A0A1B0GUA9 196 aa7.91□□□□□ -1.14
SYNE1-216ENST00000461872 PFKFB1P16118 471 aa7.91□□□□□ -1.14
SYNE1-216ENST00000461872 CACTINQ8WUQ7 758 aaKnown RBP7.91□□□□□ -1.14
SYNE1-216ENST00000461872 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.91□□□□□ -1.14
SYNE1-216ENST00000461872 FOSBP53539 338 aa7.91□□□□□ -1.14
SYNE1-216ENST00000461872 PAK1Q13153 545 aa7.91□□□□□ -1.14
SYNE1-216ENST00000461872 C10orf76Q5T2E6 689 aa7.91□□□□□ -1.14
SYNE1-216ENST00000461872 KRT40Q6A162 431 aa7.91□□□□□ -1.14
SYNE1-216ENST00000461872 FMN2Q9NZ56 1722 aa7.91□□□□□ -1.14
SYNE1-216ENST00000461872 DDAH1O94760 285 aa7.91□□□□□ -1.14
SYNE1-216ENST00000461872 GCP02774 474 aa7.91□□□□□ -1.14
SYNE1-216ENST00000461872 POTEJP0CG39 1038 aa7.91□□□□□ -1.14
SYNE1-216ENST00000461872 ODF2Q5BJF6 829 aa7.91□□□□□ -1.14
SYNE1-216ENST00000461872 NYAP1Q6ZVC0 841 aa7.91□□□□□ -1.14
SYNE1-216ENST00000461872 SAR1BQ9Y6B6 198 aa7.91□□□□□ -1.14
SYNE1-216ENST00000461872 RRAGBQ5VZM2 374 aa7.91□□□□□ -1.14
SYNE1-216ENST00000461872 TAX1BP1Q86VP1 789 aa7.91□□□□□ -1.14
SYNE1-216ENST00000461872 OR8K1Q8NGG5 319 aa7.91□□□□□ -1.14
SYNE1-216ENST00000461872 USP28Q96RU2 1077 aa7.91□□□□□ -1.14
SYNE1-216ENST00000461872 NUTM2BA6NNL0 878 aaPredicted RBP7.91□□□□□ -1.14
SYNE1-216ENST00000461872 NUTM2EB1AL46 878 aaPredicted RBP7.91□□□□□ -1.14
SYNE1-216ENST00000461872 BIN1O00499 593 aa7.91□□□□□ -1.14
SYNE1-216ENST00000461872 SLC26A4O43511 780 aa7.91□□□□□ -1.14
SYNE1-216ENST00000461872 IFNAR1P17181 557 aa7.91□□□□□ -1.14
SYNE1-216ENST00000461872 PDIA3P30101 505 aaKnown RBP7.91□□□□□ -1.14
SYNE1-216ENST00000461872 ALX1Q15699 326 aa7.91□□□□□ -1.14
SYNE1-216ENST00000461872 ALS2CLQ60I27 953 aa7.91□□□□□ -1.14
SYNE1-216ENST00000461872 TRIM34Q9BYJ4 488 aa7.91□□□□□ -1.14
SYNE1-216ENST00000461872 CEP170BQ9Y4F5 1589 aaPredicted RBP7.91□□□□□ -1.14
SYNE1-216ENST00000461872 LMTK3Q96Q04 1460 aa7.91□□□□□ -1.14
SYNE1-216ENST00000461872 ROBO2Q9HCK4 1378 aa7.91□□□□□ -1.14
SYNE1-216ENST00000461872 ANXA13P27216 316 aa7.91□□□□□ -1.14
SYNE1-216ENST00000461872 GTF2A1P52655 376 aaPredicted RBP7.91□□□□□ -1.14
SYNE1-216ENST00000461872 EHMT1Q9H9B1 1298 aa7.91□□□□□ -1.14
SYNE1-216ENST00000461872 WDR17Q8IZU2 1322 aa7.9□□□□□ -1.14
SYNE1-216ENST00000461872 A0A0D9SFI3 127 aa7.9□□□□□ -1.14
SYNE1-216ENST00000461872 A0A1B0GVL5 298 aa7.9□□□□□ -1.14
SYNE1-216ENST00000461872 GTPBP6O43824 516 aaPredicted RBP7.9□□□□□ -1.14
SYNE1-216ENST00000461872 OAS2P29728 719 aaKnown RBP7.9□□□□□ -1.14
SYNE1-216ENST00000461872 DHX37Q8IY37 1157 aaKnown RBP7.9□□□□□ -1.14
SYNE1-216ENST00000461872 SYCE1Q8N0S2 351 aa7.9□□□□□ -1.14
SYNE1-216ENST00000461872 GOLGA6BA6NDN3 693 aa7.9□□□□□ -1.14
SYNE1-216ENST00000461872 KRT18P05783 430 aaKnown RBP7.9□□□□□ -1.14
SYNE1-216ENST00000461872 SLC9C2Q5TAH2 1124 aa7.9□□□□□ -1.14
SYNE1-216ENST00000461872 JAKMIP2Q96AA8 810 aa7.9□□□□□ -1.14
SYNE1-216ENST00000461872 ZNF512BQ96KM6 892 aaPredicted RBP7.9□□□□□ -1.14
SYNE1-216ENST00000461872 PNMA6AP0CW24 399 aaPredicted RBP7.9□□□□□ -1.14
SYNE1-216ENST00000461872 HSPD1P10809 573 aaKnown RBP7.9□□□□□ -1.14
SYNE1-216ENST00000461872 LONP1P36776 959 aaKnown RBP7.9□□□□□ -1.14
SYNE1-216ENST00000461872 MCM6Q14566 821 aa7.9□□□□□ -1.14
SYNE1-216ENST00000461872 CCDC129Q6ZRS4 1044 aa7.9□□□□□ -1.14
SYNE1-216ENST00000461872 PYCARDQ9ULZ3 195 aa7.9□□□□□ -1.14
SYNE1-216ENST00000461872 GOLGA6CA6NDK9 693 aa7.9□□□□□ -1.14
SYNE1-216ENST00000461872 GOLGA6DP0CG33 693 aa7.9□□□□□ -1.14
SYNE1-216ENST00000461872 IFFO1Q0D2I5 559 aa7.9□□□□□ -1.14
SYNE1-216ENST00000461872 CFAP221Q4G0U5 840 aa7.9□□□□□ -1.14
SYNE1-216ENST00000461872 RRP12Q5JTH9 1297 aaKnown RBP7.9□□□□□ -1.14
SYNE1-216ENST00000461872 TOM1L2Q6ZVM7 507 aa7.9□□□□□ -1.14
SYNE1-216ENST00000461872 FAM227BQ96M60 508 aa7.9□□□□□ -1.14
SYNE1-216ENST00000461872 NOX5Q96PH1 765 aa7.9□□□□□ -1.14
SYNE1-216ENST00000461872 GOLGA6AQ9NYA3 693 aa7.9□□□□□ -1.14
SYNE1-216ENST00000461872 BZW2Q9Y6E2 419 aaKnown RBP7.9□□□□□ -1.14
SYNE1-216ENST00000461872 IRX3P78415 501 aaPredicted RBP7.9□□□□□ -1.14
SYNE1-216ENST00000461872 TEX2Q8IWB9 1127 aa7.9□□□□□ -1.14
SYNE1-216ENST00000461872 MPNDQ8N594 471 aa7.9□□□□□ -1.14
SYNE1-216ENST00000461872 IFT74Q96LB3 600 aa7.9□□□□□ -1.14
SYNE1-216ENST00000461872 CCDC43Q96MW1 224 aaKnown RBP7.9□□□□□ -1.14
SYNE1-216ENST00000461872 PLCB1Q9NQ66 1216 aa7.9□□□□□ -1.14
SYNE1-216ENST00000461872 SEPT2Q15019 361 aa7.9□□□□□ -1.15
SYNE1-216ENST00000461872 CCDC122Q5T0U0 273 aa7.9□□□□□ -1.15
SYNE1-216ENST00000461872 RUNDC3BQ96NL0 473 aa7.9□□□□□ -1.15
SYNE1-216ENST00000461872 NLRP5P59047 1200 aa7.9□□□□□ -1.15
SYNE1-216ENST00000461872 RBM26Q5T8P6 1007 aaKnown RBP7.9□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms