RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 ATAD5Q96QE3 1844 aa12.11□□□□□ -0.47
UPF2-204ENST00000460569 FAM196BA6NMK8 535 aa12.1□□□□□ -0.47
UPF2-204ENST00000460569 SMIM22K7EJ46 135 aa12.1□□□□□ -0.47
UPF2-204ENST00000460569 TOMM70O94826 608 aa12.1□□□□□ -0.47
UPF2-204ENST00000460569 NF2P35240 595 aa12.1□□□□□ -0.47
UPF2-204ENST00000460569 SUPT20HL1Q3ZLR7 823 aa12.1□□□□□ -0.47
UPF2-204ENST00000460569 RBM46Q8TBY0 533 aaKnown RBP12.1□□□□□ -0.47
UPF2-204ENST00000460569 EHD4Q9H223 541 aa12.1□□□□□ -0.47
UPF2-204ENST00000460569 ZNF408Q9H9D4 720 aa12.1□□□□□ -0.47
UPF2-204ENST00000460569 SERPINB13Q9UIV8 391 aa12.1□□□□□ -0.47
UPF2-204ENST00000460569 PAPPA2Q9BXP8 1791 aa12.1□□□□□ -0.47
UPF2-204ENST00000460569 DOCK1Q14185 1865 aa12.09□□□□□ -0.47
UPF2-204ENST00000460569 ZNF213O14771 459 aa12.09□□□□□ -0.47
UPF2-204ENST00000460569 EPB41L2O43491 1005 aaKnown RBP12.09□□□□□ -0.47
UPF2-204ENST00000460569 SLC3A2P08195 630 aaKnown RBP12.09□□□□□ -0.47
UPF2-204ENST00000460569 SLURP2P0DP57 97 aa12.09□□□□□ -0.47
UPF2-204ENST00000460569 MCCP23508 829 aa12.09□□□□□ -0.47
UPF2-204ENST00000460569 CTDSPL2Q05D32 466 aa12.09□□□□□ -0.47
UPF2-204ENST00000460569 FMR1Q06787 632 aaKnown RBP eCLIP12.09□□□□□ -0.472e-10■■□□□ 12.8
UPF2-204ENST00000460569 DCAF15Q66K64 600 aa12.09□□□□□ -0.47
UPF2-204ENST00000460569 MIGA2Q7L4E1 593 aa12.09□□□□□ -0.47
UPF2-204ENST00000460569 SLC44A5Q8NCS7 719 aa12.09□□□□□ -0.47
UPF2-204ENST00000460569 DYNLL2Q96FJ2 89 aa12.09□□□□□ -0.47
UPF2-204ENST00000460569 USP26Q9BXU7 913 aa12.09□□□□□ -0.47
UPF2-204ENST00000460569 BACH2Q9BYV9 841 aa12.09□□□□□ -0.47
UPF2-204ENST00000460569 UPF2Q9HAU5 1272 aaKnown RBP12.09□□□□□ -0.47
UPF2-204ENST00000460569 HERC5Q9UII4 1024 aaKnown RBP12.09□□□□□ -0.47
UPF2-204ENST00000460569 SLC27A2O14975 620 aa12.08□□□□□ -0.48
UPF2-204ENST00000460569 CYP21A2P08686 494 aa12.08□□□□□ -0.48
UPF2-204ENST00000460569 GABPAQ06546 454 aa12.08□□□□□ -0.48
UPF2-204ENST00000460569 PRKG1Q13976 671 aa12.08□□□□□ -0.48
UPF2-204ENST00000460569 TTLL12Q14166 644 aaPredicted RBP12.08□□□□□ -0.48
UPF2-204ENST00000460569 NECTIN1Q15223 517 aa12.08□□□□□ -0.48
UPF2-204ENST00000460569 RNF20Q5VTR2 975 aa12.08□□□□□ -0.48
UPF2-204ENST00000460569 CREB3L3Q68CJ9 461 aa12.08□□□□□ -0.48
UPF2-204ENST00000460569 C16orf86Q6ZW13 317 aa12.08□□□□□ -0.48
UPF2-204ENST00000460569 TBC1D10CQ8IV04 446 aa12.08□□□□□ -0.48
UPF2-204ENST00000460569 FOXP4Q8IVH2 680 aaPredicted RBP12.08□□□□□ -0.48
UPF2-204ENST00000460569 NBPF3Q9H094 633 aa12.08□□□□□ -0.48
UPF2-204ENST00000460569 DNAJC18Q9H819 358 aa12.08□□□□□ -0.48
UPF2-204ENST00000460569 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.08□□□□□ -0.48
UPF2-204ENST00000460569 ANAPC4Q9UJX5 808 aa12.08□□□□□ -0.48
UPF2-204ENST00000460569 PPP1R12BO60237 982 aaPredicted RBP12.07□□□□□ -0.48
UPF2-204ENST00000460569 PRDM1O75626 825 aa12.07□□□□□ -0.48
UPF2-204ENST00000460569 ITGBL1O95965 494 aaPredicted RBP12.07□□□□□ -0.48
UPF2-204ENST00000460569 HSPA4P34932 840 aa12.07□□□□□ -0.48
UPF2-204ENST00000460569 CDK8P49336 464 aa12.07□□□□□ -0.48
UPF2-204ENST00000460569 PDE4BQ07343 736 aa12.07□□□□□ -0.48
UPF2-204ENST00000460569 AKNAD1Q5T1N1 836 aa12.07□□□□□ -0.48
UPF2-204ENST00000460569 ZNF341Q9BYN7 854 aa12.07□□□□□ -0.48
UPF2-204ENST00000460569 RNF41Q9H4P4 317 aaPredicted RBP12.07□□□□□ -0.48
UPF2-204ENST00000460569 ZNF287Q9HBT7 754 aa12.07□□□□□ -0.48
UPF2-204ENST00000460569 TOMM22Q9NS69 142 aa12.07□□□□□ -0.48
UPF2-204ENST00000460569 SWAP70Q9UH65 585 aa12.07□□□□□ -0.48
UPF2-204ENST00000460569 FZD1Q9UP38 647 aa12.07□□□□□ -0.48
UPF2-204ENST00000460569 TAF6LQ9Y6J9 622 aa12.07□□□□□ -0.48
UPF2-204ENST00000460569 TBC1D12O60347 775 aa12.06□□□□□ -0.48
UPF2-204ENST00000460569 CELF2O95319 508 aaKnown RBP12.06□□□□□ -0.48
UPF2-204ENST00000460569 ZKSCAN1P17029 563 aaPredicted RBP12.06□□□□□ -0.48
UPF2-204ENST00000460569 SHMT1P34896 483 aa12.06□□□□□ -0.48
UPF2-204ENST00000460569 FSTL1Q12841 308 aa12.06□□□□□ -0.48
UPF2-204ENST00000460569 RRP12Q5JTH9 1297 aaKnown RBP12.06□□□□□ -0.48
UPF2-204ENST00000460569 MFSD6Q6ZSS7 791 aa12.06□□□□□ -0.48
UPF2-204ENST00000460569 METTL16Q86W50 562 aaKnown RBP12.06□□□□□ -0.48
UPF2-204ENST00000460569 STAG1Q8WVM7 1258 aa12.06□□□□□ -0.48
UPF2-204ENST00000460569 WRNIP1Q96S55 665 aa12.06□□□□□ -0.48
UPF2-204ENST00000460569 MKNK2Q9HBH9 465 aa12.06□□□□□ -0.48
UPF2-204ENST00000460569 TAOK2Q9UL54 1235 aa12.06□□□□□ -0.48
UPF2-204ENST00000460569 ANGEL1Q9UNK9 670 aaKnown RBP12.06□□□□□ -0.48
UPF2-204ENST00000460569 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.06□□□□□ -0.48
UPF2-204ENST00000460569 NEDD4P46934 1319 aa12.06□□□□□ -0.48
UPF2-204ENST00000460569 PASKQ96RG2 1323 aa12.06□□□□□ -0.48
UPF2-204ENST00000460569 GREB1LQ9C091 1923 aaPredicted RBP12.05□□□□□ -0.48
UPF2-204ENST00000460569 E7EWF7 191 aa12.05□□□□□ -0.48
UPF2-204ENST00000460569 RASA1P20936 1047 aa12.05□□□□□ -0.48
UPF2-204ENST00000460569 IREB2P48200 963 aaKnown RBP12.05□□□□□ -0.48
UPF2-204ENST00000460569 MAP3K10Q02779 954 aa12.05□□□□□ -0.48
UPF2-204ENST00000460569 STOX1Q6ZVD7 989 aa12.05□□□□□ -0.48
UPF2-204ENST00000460569 ARMC9Q7Z3E5 817 aa12.05□□□□□ -0.48
UPF2-204ENST00000460569 RASEFQ8IZ41 740 aa12.05□□□□□ -0.48
UPF2-204ENST00000460569 GBA2Q9HCG7 927 aaPredicted RBP12.05□□□□□ -0.48
UPF2-204ENST00000460569 INCENPQ9NQS7 918 aa12.05□□□□□ -0.48
UPF2-204ENST00000460569 SNX14Q9Y5W7 946 aa12.05□□□□□ -0.48
UPF2-204ENST00000460569 TACC3Q9Y6A5 838 aa12.05□□□□□ -0.48
UPF2-204ENST00000460569 B4E1Z4 1266 aa12.04□□□□□ -0.48
UPF2-204ENST00000460569 MPHOSPH10O00566 681 aaKnown RBP12.04□□□□□ -0.48
UPF2-204ENST00000460569 ORC4O43929 436 aa12.04□□□□□ -0.48
UPF2-204ENST00000460569 RANBP6O60518 1105 aaKnown RBP12.04□□□□□ -0.48
UPF2-204ENST00000460569 GDF11O95390 407 aa12.04□□□□□ -0.48
UPF2-204ENST00000460569 PCP11498 1178 aaKnown RBP12.04□□□□□ -0.48
UPF2-204ENST00000460569 TRDNQ13061 729 aa12.04□□□□□ -0.48
UPF2-204ENST00000460569 CERKLQ49MI3 558 aaPredicted RBP12.04□□□□□ -0.48
UPF2-204ENST00000460569 TATDN1Q6P1N9 297 aa12.04□□□□□ -0.48
UPF2-204ENST00000460569 MOB2Q70IA6 237 aa12.04□□□□□ -0.48
UPF2-204ENST00000460569 RALYLQ86SE5 291 aaKnown RBP12.04□□□□□ -0.48
UPF2-204ENST00000460569 ZNF444Q8N0Y2 327 aaPredicted RBP12.04□□□□□ -0.48
UPF2-204ENST00000460569 C2orf69Q8N8R5 385 aa12.04□□□□□ -0.48
UPF2-204ENST00000460569 KLRG1Q96E93 195 aa12.04□□□□□ -0.48
UPF2-204ENST00000460569 C22orf23Q9BZE7 217 aa12.04□□□□□ -0.48
UPF2-204ENST00000460569 KRT23Q9C075 422 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms