RNA–Protein interactions for RNA: ENST00000458530.1

VPS50-207, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 667 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-207ENST00000458530 KIAA2012Q0VF49 1180 aa10.6□□□□□ -0.71
VPS50-207ENST00000458530 CHAF1AQ13111 956 aaPredicted RBP10.6□□□□□ -0.71
VPS50-207ENST00000458530 ALX1Q15699 326 aa10.6□□□□□ -0.71
VPS50-207ENST00000458530 DZIP1Q86YF9 867 aaKnown RBP10.6□□□□□ -0.71
VPS50-207ENST00000458530 SUPT20HQ8NEM7 779 aa10.6□□□□□ -0.71
VPS50-207ENST00000458530 TDRD7Q8NHU6 1098 aaKnown RBP10.6□□□□□ -0.71
VPS50-207ENST00000458530 TBC1D16Q8TBP0 767 aa10.6□□□□□ -0.71
VPS50-207ENST00000458530 CHMP4CQ96CF2 233 aa10.6□□□□□ -0.71
VPS50-207ENST00000458530 ZSCAN31Q96LW9 406 aaPredicted RBP10.6□□□□□ -0.71
VPS50-207ENST00000458530 NOL10Q9BSC4 688 aaKnown RBP10.6□□□□□ -0.71
VPS50-207ENST00000458530 UPF3BQ9BZI7 483 aaKnown RBP10.6□□□□□ -0.71
VPS50-207ENST00000458530 ZC3H12CQ9C0D7 883 aaKnown RBP10.6□□□□□ -0.71
VPS50-207ENST00000458530 COA1Q9GZY4 146 aa10.6□□□□□ -0.71
VPS50-207ENST00000458530 PUS7LQ9H0K6 701 aaKnown RBP10.6□□□□□ -0.71
VPS50-207ENST00000458530 CWC22Q9HCG8 908 aaKnown RBP10.6□□□□□ -0.71
VPS50-207ENST00000458530 SH2B1Q9NRF2 756 aaPredicted RBP10.6□□□□□ -0.71
VPS50-207ENST00000458530 PDRG1Q9NUG6 133 aa10.6□□□□□ -0.71
VPS50-207ENST00000458530 IQSEC3Q9UPP2 1182 aaPredicted RBP10.6□□□□□ -0.71
VPS50-207ENST00000458530 FOCADQ5VW36 1801 aa10.59□□□□□ -0.71
VPS50-207ENST00000458530 BAZ2AQ9UIF9 1905 aaKnown RBP10.59□□□□□ -0.71
VPS50-207ENST00000458530 MAGEB6P1A0A0J9YX57 407 aa10.59□□□□□ -0.71
VPS50-207ENST00000458530 PPP1R37O75864 691 aa10.59□□□□□ -0.71
VPS50-207ENST00000458530 APPP05067 770 aa10.59□□□□□ -0.71
VPS50-207ENST00000458530 LDHBP07195 334 aaKnown RBP10.59□□□□□ -0.71
VPS50-207ENST00000458530 LDHCP07864 332 aa10.59□□□□□ -0.71
VPS50-207ENST00000458530 HOXB3P14651 431 aaPredicted RBP10.59□□□□□ -0.71
VPS50-207ENST00000458530 KLRK1P26718 216 aa10.59□□□□□ -0.71
VPS50-207ENST00000458530 SOX10P56693 466 aa10.59□□□□□ -0.71
VPS50-207ENST00000458530 HUNKP57058 714 aa10.59□□□□□ -0.71
VPS50-207ENST00000458530 TRDNQ13061 729 aa10.59□□□□□ -0.71
VPS50-207ENST00000458530 NEK1Q96PY6 1258 aa10.59□□□□□ -0.71
VPS50-207ENST00000458530 NAPBQ9H115 298 aa10.59□□□□□ -0.71
VPS50-207ENST00000458530 ALDH8A1Q9H2A2 487 aaPredicted RBP10.59□□□□□ -0.71
VPS50-207ENST00000458530 CD209Q9NNX6 404 aa10.59□□□□□ -0.71
VPS50-207ENST00000458530 RNF186Q9NXI6 227 aa10.59□□□□□ -0.71
VPS50-207ENST00000458530 CHMP5Q9NZZ3 219 aa10.59□□□□□ -0.71
VPS50-207ENST00000458530 LIMCH1Q9UPQ0 1083 aa10.59□□□□□ -0.71
VPS50-207ENST00000458530 SUGT1Q9Y2Z0 365 aa10.59□□□□□ -0.71
VPS50-207ENST00000458530 CDK5RAP2Q96SN8 1893 aa10.59□□□□□ -0.71
VPS50-207ENST00000458530 SHTN1A0MZ66 631 aa10.58□□□□□ -0.72
VPS50-207ENST00000458530 YDJCA8MPS7 323 aa10.58□□□□□ -0.72
VPS50-207ENST00000458530 PATL2C9JE40 543 aaKnown RBP10.58□□□□□ -0.72
VPS50-207ENST00000458530 ZNF213O14771 459 aa10.58□□□□□ -0.72
VPS50-207ENST00000458530 CYP21A2P08686 494 aa10.58□□□□□ -0.72
VPS50-207ENST00000458530 RPS6KB1P23443 525 aa10.58□□□□□ -0.72
VPS50-207ENST00000458530 FGD1P98174 961 aa10.58□□□□□ -0.72
VPS50-207ENST00000458530 RGMBQ6NW40 437 aa10.58□□□□□ -0.72
VPS50-207ENST00000458530 DLK2Q6UY11 383 aa10.58□□□□□ -0.72
VPS50-207ENST00000458530 RALYLQ86SE5 291 aaKnown RBP10.58□□□□□ -0.72
VPS50-207ENST00000458530 DPF2Q92785 391 aa10.58□□□□□ -0.72
VPS50-207ENST00000458530 INTS4Q96HW7 963 aaKnown RBP10.58□□□□□ -0.72
VPS50-207ENST00000458530 TTC14Q96N46 770 aa10.58□□□□□ -0.72
VPS50-207ENST00000458530 STRBPQ96SI9 672 aaKnown RBP10.58□□□□□ -0.72
VPS50-207ENST00000458530 SLKQ9H2G2 1235 aaPredicted RBP10.58□□□□□ -0.72
VPS50-207ENST00000458530 WDR19Q8NEZ3 1342 aa10.58□□□□□ -0.72
VPS50-207ENST00000458530 ECM29Q5VYK3 1845 aa10.57□□□□□ -0.72
VPS50-207ENST00000458530 CD2BP2O95400 341 aaKnown RBP10.57□□□□□ -0.72
VPS50-207ENST00000458530 BAG3O95817 575 aa10.57□□□□□ -0.72
VPS50-207ENST00000458530 CHGBP05060 677 aa10.57□□□□□ -0.72
VPS50-207ENST00000458530 SLC10A3P09131 477 aa10.57□□□□□ -0.72
VPS50-207ENST00000458530 TDO2P48775 406 aa10.57□□□□□ -0.72
VPS50-207ENST00000458530 KIF23Q02241 960 aaPredicted RBP10.57□□□□□ -0.72
VPS50-207ENST00000458530 TNIP1Q15025 636 aa10.57□□□□□ -0.72
VPS50-207ENST00000458530 GIMAP6Q6P9H5 292 aa10.57□□□□□ -0.72
VPS50-207ENST00000458530 CTU1Q7Z7A3 348 aaKnown RBP10.57□□□□□ -0.72
VPS50-207ENST00000458530 TXNRD3Q86VQ6 643 aa10.57□□□□□ -0.72
VPS50-207ENST00000458530 HS6ST3Q8IZP7 471 aa10.57□□□□□ -0.72
VPS50-207ENST00000458530 CCDC102AQ96A19 550 aa10.57□□□□□ -0.72
VPS50-207ENST00000458530 NSUN4Q96CB9 384 aaKnown RBP10.57□□□□□ -0.72
VPS50-207ENST00000458530 TMX3Q96JJ7 454 aa10.57□□□□□ -0.72
VPS50-207ENST00000458530 CRNKL1Q9BZJ0 848 aaKnown RBP10.57□□□□□ -0.72
VPS50-207ENST00000458530 CNNM2Q9H8M5 875 aa10.57□□□□□ -0.72
VPS50-207ENST00000458530 POLLQ9UGP5 575 aa10.57□□□□□ -0.72
VPS50-207ENST00000458530 CNOT7Q9UIV1 285 aaKnown RBP10.57□□□□□ -0.72
VPS50-207ENST00000458530 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.57□□□□□ -0.72
VPS50-207ENST00000458530 SLC4A4Q9Y6R1 1079 aa10.57□□□□□ -0.72
VPS50-207ENST00000458530 FAM205AQ6ZU69 1335 aa10.57□□□□□ -0.72
VPS50-207ENST00000458530 E7EWF7 191 aa10.56□□□□□ -0.72
VPS50-207ENST00000458530 FGAP02671 866 aa10.56□□□□□ -0.72
VPS50-207ENST00000458530 NT5C2P49902 561 aa10.56□□□□□ -0.72
VPS50-207ENST00000458530 AK2P54819 239 aa10.56□□□□□ -0.72
VPS50-207ENST00000458530 MECOMQ03112 1051 aa10.56□□□□□ -0.72
VPS50-207ENST00000458530 ADCK5Q3MIX3 580 aa10.56□□□□□ -0.72
VPS50-207ENST00000458530 SLFNL1Q499Z3 407 aa10.56□□□□□ -0.72
VPS50-207ENST00000458530 DHX32Q7L7V1 743 aaKnown RBP10.56□□□□□ -0.72
VPS50-207ENST00000458530 USP48Q86UV5 1035 aa10.56□□□□□ -0.72
VPS50-207ENST00000458530 AMOTL1Q8IY63 956 aa10.56□□□□□ -0.72
VPS50-207ENST00000458530 NCOA7Q8NI08 942 aa10.56□□□□□ -0.72
VPS50-207ENST00000458530 CSRNP1Q96S65 589 aa10.56□□□□□ -0.72
VPS50-207ENST00000458530 RNF41Q9H4P4 317 aaPredicted RBP10.56□□□□□ -0.72
VPS50-207ENST00000458530 ARMT1Q9H993 441 aa10.56□□□□□ -0.72
VPS50-207ENST00000458530 ZNF408Q9H9D4 720 aa10.56□□□□□ -0.72
VPS50-207ENST00000458530 GBA2Q9HCG7 927 aaPredicted RBP10.56□□□□□ -0.72
VPS50-207ENST00000458530 MYH1P12882 1939 aa10.56□□□□□ -0.72
VPS50-207ENST00000458530 MYH8P13535 1937 aa10.56□□□□□ -0.72
VPS50-207ENST00000458530 WTIPA6NIX2 430 aaPredicted RBP10.55□□□□□ -0.72
VPS50-207ENST00000458530 TRPA1O75762 1119 aa10.55□□□□□ -0.72
VPS50-207ENST00000458530 RAD17O75943 681 aa10.55□□□□□ -0.72
VPS50-207ENST00000458530 EGFRP00533 1210 aa10.55□□□□□ -0.72
VPS50-207ENST00000458530 SLC3A2P08195 630 aaKnown RBP10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms