RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 ATP6V0A2Q9Y487 856 aa5.8□□□□□ -1.48
CSMD3-204ENST00000455883 TCP1P17987 556 aaKnown RBP5.8□□□□□ -1.48
CSMD3-204ENST00000455883 TEX2Q8IWB9 1127 aa5.8□□□□□ -1.48
CSMD3-204ENST00000455883 CABS1Q96KC9 395 aa5.8□□□□□ -1.48
CSMD3-204ENST00000455883 FOXD4L1Q9NU39 408 aa5.8□□□□□ -1.48
CSMD3-204ENST00000455883 COL17A1Q9UMD9 1497 aaPredicted RBP5.8□□□□□ -1.48
CSMD3-204ENST00000455883 BCRP11274 1271 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 TYRO3Q06418 890 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 DBN1Q16643 649 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 GLE1Q53GS7 698 aaKnown RBP5.79□□□□□ -1.48
CSMD3-204ENST00000455883 TTC19Q6DKK2 380 aaPredicted RBP5.79□□□□□ -1.48
CSMD3-204ENST00000455883 C4BPBP20851 252 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 BRD2P25440 801 aaKnown RBP5.79□□□□□ -1.48
CSMD3-204ENST00000455883 SLC9C1Q4G0N8 1177 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 ANKRD20A3Q5VUR7 823 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 ALS2CLQ60I27 953 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 VPS52Q8N1B4 723 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 HELBQ8NG08 1087 aaPredicted RBP5.79□□□□□ -1.48
CSMD3-204ENST00000455883 FRMD4BQ9Y2L6 1034 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 ORC6Q9Y5N6 252 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 ARHGAP10A1A4S6 786 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 SLC4A2P04920 1241 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 SP100P23497 879 aaPredicted RBP5.79□□□□□ -1.48
CSMD3-204ENST00000455883 RSPH3Q86UC2 560 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 MTRQ99707 1265 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 TBC1D2Q9BYX2 928 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 SYNCQ9H7C4 482 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 E9PMD0 336 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 RASSF7Q02833 373 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 TRIM47Q96LD4 638 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 CNPY3Q9BT09 278 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 ZC4H2Q9NQZ6 224 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 NUTM2BA6NNL0 878 aaPredicted RBP5.79□□□□□ -1.48
CSMD3-204ENST00000455883 NUTM2EB1AL46 878 aaPredicted RBP5.79□□□□□ -1.48
CSMD3-204ENST00000455883 STAT6P42226 847 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 TMED1Q13445 227 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 MFSD6Q6ZSS7 791 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 THOC1Q96FV9 657 aaKnown RBP5.79□□□□□ -1.48
CSMD3-204ENST00000455883 C6orf50Q9HD87 102 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 ZNF330Q9Y3S2 320 aaPredicted RBP5.79□□□□□ -1.48
CSMD3-204ENST00000455883 BLMP54132 1417 aaPredicted RBP5.79□□□□□ -1.48
CSMD3-204ENST00000455883 TROVE2P10155 538 aaKnown RBP eCLIP5.79□□□□□ -1.48
CSMD3-204ENST00000455883 KRT5P13647 590 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 ANXA13P27216 316 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 LIN9Q5TKA1 542 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 NT5C3AQ9H0P0 336 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 SH2D4AQ9H788 454 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 DIDO1Q9BTC0 2240 aaKnown RBP5.79□□□□□ -1.48
CSMD3-204ENST00000455883 SUN1O94901 812 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 SMTNP53814 917 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 BIRC3Q13489 604 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 EMBQ6PCB8 327 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 C3orf20Q8ND61 904 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.79□□□□□ -1.48
CSMD3-204ENST00000455883 RSPH14Q9UHP6 348 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 SAMD9LQ8IVG5 1584 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 RARSP54136 660 aaKnown RBP5.79□□□□□ -1.48
CSMD3-204ENST00000455883 CUL1Q13616 776 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 RASEFQ8IZ41 740 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 BAG1Q99933 345 aaPredicted RBP5.79□□□□□ -1.48
CSMD3-204ENST00000455883 KDM3AQ9Y4C1 1321 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 TRIM75PA6NK02 468 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 TTI1O43156 1089 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 MAN1A2O60476 641 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 SSFA2P28290 1259 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 TEDDM1Q5T9Z0 273 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 TRIM4Q9C037 500 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 FRMPD1Q5SYB0 1578 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 HOXC8P31273 242 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 TMPOP42166 694 aaKnown RBP5.79□□□□□ -1.48
CSMD3-204ENST00000455883 CLNS1AP54105 237 aaKnown RBP5.79□□□□□ -1.48
CSMD3-204ENST00000455883 UBE4AQ14139 1066 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 ENAHQ8N8S7 591 aaPredicted RBP5.79□□□□□ -1.48
CSMD3-204ENST00000455883 TERB1Q8NA31 727 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 TTC25Q96NG3 672 aa5.79□□□□□ -1.48
CSMD3-204ENST00000455883 ERCC5P28715 1186 aaPredicted RBP5.78□□□□□ -1.48
CSMD3-204ENST00000455883 PRKAR2BP31323 418 aa5.78□□□□□ -1.48
CSMD3-204ENST00000455883 IFIT5Q13325 482 aaKnown RBP5.78□□□□□ -1.48
CSMD3-204ENST00000455883 BICD1Q96G01 975 aa5.78□□□□□ -1.48
CSMD3-204ENST00000455883 AKAP6Q13023 2319 aa5.78□□□□□ -1.48
CSMD3-204ENST00000455883 ORC2Q13416 577 aaPredicted RBP5.78□□□□□ -1.48
CSMD3-204ENST00000455883 FOXD4L5Q5VV16 416 aaPredicted RBP5.78□□□□□ -1.48
CSMD3-204ENST00000455883 PDZD4Q76G19 769 aaPredicted RBP5.78□□□□□ -1.48
CSMD3-204ENST00000455883 FOXD4L4Q8WXT5 416 aaPredicted RBP5.78□□□□□ -1.48
CSMD3-204ENST00000455883 ANKRD2Q9GZV1 360 aa5.78□□□□□ -1.48
CSMD3-204ENST00000455883 DCAF8L1A6NGE4 600 aa5.78□□□□□ -1.48
CSMD3-204ENST00000455883 SCP2P22307 547 aa5.78□□□□□ -1.48
CSMD3-204ENST00000455883 NME8Q8N427 588 aa5.78□□□□□ -1.48
CSMD3-204ENST00000455883 TTC1Q99614 292 aa5.78□□□□□ -1.48
CSMD3-204ENST00000455883 HAUS4Q9H6D7 363 aa5.78□□□□□ -1.48
CSMD3-204ENST00000455883 BIN2Q9UBW5 565 aaPredicted RBP5.78□□□□□ -1.48
CSMD3-204ENST00000455883 CCDC78A2IDD5 438 aa5.78□□□□□ -1.48
CSMD3-204ENST00000455883 NFKBIAP25963 317 aa5.78□□□□□ -1.48
CSMD3-204ENST00000455883 CDCA7LQ96GN5 454 aa5.78□□□□□ -1.48
CSMD3-204ENST00000455883 DOPEY2Q9Y3R5 2298 aa5.78□□□□□ -1.48
CSMD3-204ENST00000455883 KDM4AO75164 1064 aa5.78□□□□□ -1.48
CSMD3-204ENST00000455883 TPD52P55327 224 aaPredicted RBP5.78□□□□□ -1.48
CSMD3-204ENST00000455883 MKRN3Q13064 507 aaKnown RBP5.78□□□□□ -1.48
CSMD3-204ENST00000455883 MCM10Q7L590 875 aa5.78□□□□□ -1.48
CSMD3-204ENST00000455883 MICALL1Q8N3F8 863 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms