RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 ZNF654Q8IZM8 581 aa17.42■□□□□ 0.38
LDLR-202ENST00000455727 ZKSCAN3Q9BRR0 538 aa17.42■□□□□ 0.38
LDLR-202ENST00000455727 MINDY4BA8MYZ0 360 aa17.42■□□□□ 0.38
LDLR-202ENST00000455727 ZPR1O75312 459 aa17.42■□□□□ 0.38
LDLR-202ENST00000455727 TPTE2Q6XPS3 522 aa17.42■□□□□ 0.38
LDLR-202ENST00000455727 NOSTRINQ8IVI9 506 aa17.42■□□□□ 0.38
LDLR-202ENST00000455727 C8orf37Q96NL8 207 aa17.42■□□□□ 0.38
LDLR-202ENST00000455727 FOXP1Q9H334 677 aaPredicted RBP17.42■□□□□ 0.38
LDLR-202ENST00000455727 CLIP2Q9UDT6 1046 aa17.42■□□□□ 0.38
LDLR-202ENST00000455727 PYCARDQ9ULZ3 195 aa17.42■□□□□ 0.38
LDLR-202ENST00000455727 CUTAO60888 179 aa17.41■□□□□ 0.38
LDLR-202ENST00000455727 MARCKSP29966 332 aaPredicted RBP17.41■□□□□ 0.38
LDLR-202ENST00000455727 ZRSR1Q15695 479 aaKnown RBP17.41■□□□□ 0.38
LDLR-202ENST00000455727 NBPF5PQ86XG9 351 aaPredicted RBP17.41■□□□□ 0.38
LDLR-202ENST00000455727 PRIMPOLQ96LW4 560 aa17.41■□□□□ 0.38
LDLR-202ENST00000455727 DUOX1Q9NRD9 1551 aa17.41■□□□□ 0.38
LDLR-202ENST00000455727 DLEC1Q9Y238 1755 aa17.41■□□□□ 0.38
LDLR-202ENST00000455727 CCDC88AQ3V6T2 1871 aa17.41■□□□□ 0.38
LDLR-202ENST00000455727 THSD7AQ9UPZ6 1657 aa17.41■□□□□ 0.38
LDLR-202ENST00000455727 DNTTIP2Q5QJE6 756 aaKnown RBP17.41■□□□□ 0.38
LDLR-202ENST00000455727 RESP18Q5W5W9 173 aa17.41■□□□□ 0.38
LDLR-202ENST00000455727 ZNF384Q8TF68 577 aa17.41■□□□□ 0.38
LDLR-202ENST00000455727 TAF1LQ8IZX4 1826 aa17.41■□□□□ 0.38
LDLR-202ENST00000455727 MROH7-TTC4A0A0A0MT08 1334 aa17.4■□□□□ 0.38
LDLR-202ENST00000455727 SYKP43405 635 aa17.4■□□□□ 0.38
LDLR-202ENST00000455727 NLRP12P59046 1061 aa17.4■□□□□ 0.38
LDLR-202ENST00000455727 SHC4Q6S5L8 630 aa17.4■□□□□ 0.38
LDLR-202ENST00000455727 PTF1AQ7RTS3 328 aa17.4■□□□□ 0.38
LDLR-202ENST00000455727 NSUN4Q96CB9 384 aaKnown RBP17.4■□□□□ 0.38
LDLR-202ENST00000455727 TNKSO95271 1327 aa17.4■□□□□ 0.38
LDLR-202ENST00000455727 IGSF3O75054 1194 aa17.39■□□□□ 0.38
LDLR-202ENST00000455727 HIBADHP31937 336 aaKnown RBP17.39■□□□□ 0.38
LDLR-202ENST00000455727 GUCY1A2P33402 732 aa17.39■□□□□ 0.38
LDLR-202ENST00000455727 RNF26Q9BY78 433 aaPredicted RBP17.39■□□□□ 0.38
LDLR-202ENST00000455727 SRP68Q9UHB9 627 aaKnown RBP17.39■□□□□ 0.38
LDLR-202ENST00000455727 NRBP1Q9UHY1 535 aa17.39■□□□□ 0.38
LDLR-202ENST00000455727 RTCBQ9Y3I0 505 aaKnown RBP17.39■□□□□ 0.38
LDLR-202ENST00000455727 LY75O60449 1722 aa17.39■□□□□ 0.37
LDLR-202ENST00000455727 MAST2Q6P0Q8 1798 aa17.39■□□□□ 0.37
LDLR-202ENST00000455727 UBE2Q2LH0YL09 131 aa17.39■□□□□ 0.37
LDLR-202ENST00000455727 GNPATO15228 680 aa17.39■□□□□ 0.37
LDLR-202ENST00000455727 DYNLL1P63167 89 aaKnown RBP17.39■□□□□ 0.37
LDLR-202ENST00000455727 RILPL1Q5EBL4 403 aa17.39■□□□□ 0.37
LDLR-202ENST00000455727 DIS3L2Q8IYB7 885 aaKnown RBP17.39■□□□□ 0.37
LDLR-202ENST00000455727 ELOA2Q8IYF1 753 aaPredicted RBP17.39■□□□□ 0.37
LDLR-202ENST00000455727 C17orf53Q8N3J3 647 aaPredicted RBP17.39■□□□□ 0.37
LDLR-202ENST00000455727 ERCC4Q92889 916 aaPredicted RBP17.39■□□□□ 0.37
LDLR-202ENST00000455727 ZSCAN10Q96SZ4 725 aaPredicted RBP17.39■□□□□ 0.37
LDLR-202ENST00000455727 UQCRHLA0A096LP55 91 aa17.38■□□□□ 0.37
LDLR-202ENST00000455727 UQCRHP07919 91 aa17.38■□□□□ 0.37
LDLR-202ENST00000455727 AOPEPQ8N6M6 819 aa17.38■□□□□ 0.37
LDLR-202ENST00000455727 TUBE1Q9UJT0 475 aa17.38■□□□□ 0.37
LDLR-202ENST00000455727 BTBD18B2RXH4 712 aa17.38■□□□□ 0.37
LDLR-202ENST00000455727 NEMFO60524 1076 aa17.38■□□□□ 0.37
LDLR-202ENST00000455727 TM4SF1P30408 202 aa17.38■□□□□ 0.37
LDLR-202ENST00000455727 DPCR1Q3MIW9 517 aa17.38■□□□□ 0.37
LDLR-202ENST00000455727 CTR9Q6PD62 1173 aa17.38■□□□□ 0.37
LDLR-202ENST00000455727 ENAHQ8N8S7 591 aaPredicted RBP17.38■□□□□ 0.37
LDLR-202ENST00000455727 UBE2Q2Q8WVN8 375 aa17.38■□□□□ 0.37
LDLR-202ENST00000455727 CCNL1Q9UK58 526 aaPredicted RBP17.38■□□□□ 0.37
LDLR-202ENST00000455727 KIAA1551Q9HCM1 1747 aa17.38■□□□□ 0.37
LDLR-202ENST00000455727 A0A087WWV3 80 aa17.37■□□□□ 0.37
LDLR-202ENST00000455727 DYNC1I1O14576 645 aa17.37■□□□□ 0.37
LDLR-202ENST00000455727 MECOMQ03112 1051 aa17.37■□□□□ 0.37
LDLR-202ENST00000455727 IQCA1Q86XH1 822 aa17.37■□□□□ 0.37
LDLR-202ENST00000455727 STK11IPQ8N1F8 1099 aa17.37■□□□□ 0.37
LDLR-202ENST00000455727 KRI1Q8N9T8 703 aaKnown RBP17.37■□□□□ 0.37
LDLR-202ENST00000455727 LAMB1P07942 1786 aa17.37■□□□□ 0.37
LDLR-202ENST00000455727 CALM1P0DP23 149 aa17.37■□□□□ 0.37
LDLR-202ENST00000455727 CALM2P0DP24 149 aa17.37■□□□□ 0.37
LDLR-202ENST00000455727 CALM3P0DP25 149 aa17.37■□□□□ 0.37
LDLR-202ENST00000455727 TOB1P50616 345 aaPredicted RBP17.37■□□□□ 0.37
LDLR-202ENST00000455727 SMIM5Q71RC9 77 aa17.37■□□□□ 0.37
LDLR-202ENST00000455727 NUP133Q8WUM0 1156 aa17.37■□□□□ 0.37
LDLR-202ENST00000455727 ATP8A2Q9NTI2 1148 aa17.37■□□□□ 0.37
LDLR-202ENST00000455727 MORC2Q9Y6X9 1032 aaPredicted RBP17.37■□□□□ 0.37
LDLR-202ENST00000455727 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.36■□□□□ 0.37
LDLR-202ENST00000455727 ORC4O43929 436 aa17.36■□□□□ 0.37
LDLR-202ENST00000455727 KLRK1P26718 216 aa17.36■□□□□ 0.37
LDLR-202ENST00000455727 MYRIPQ8NFW9 859 aa17.36■□□□□ 0.37
LDLR-202ENST00000455727 ARHGEF1Q92888 912 aaKnown RBP17.36■□□□□ 0.37
LDLR-202ENST00000455727 CRNKL1Q9BZJ0 848 aaKnown RBP17.36■□□□□ 0.37
LDLR-202ENST00000455727 RBM28Q9NW13 759 aaKnown RBP17.36■□□□□ 0.37
LDLR-202ENST00000455727 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.36■□□□□ 0.378e-10■□□□□ 8.4
LDLR-202ENST00000455727 SMTNL1A8MU46 457 aa17.36■□□□□ 0.37
LDLR-202ENST00000455727 CCDC144BQ3MJ40 725 aa17.36■□□□□ 0.37
LDLR-202ENST00000455727 IFIT1BQ5T764 474 aaKnown RBP17.36■□□□□ 0.37
LDLR-202ENST00000455727 CATIPQ7Z7H3 387 aa17.36■□□□□ 0.37
LDLR-202ENST00000455727 CACTINQ8WUQ7 758 aaKnown RBP17.36■□□□□ 0.37
LDLR-202ENST00000455727 KCNJ14Q9UNX9 436 aa17.36■□□□□ 0.37
LDLR-202ENST00000455727 IRS2Q9Y4H2 1338 aa17.36■□□□□ 0.37
LDLR-202ENST00000455727 IKBKBO14920 756 aa17.35■□□□□ 0.37
LDLR-202ENST00000455727 PRPF3O43395 683 aaKnown RBP17.35■□□□□ 0.37
LDLR-202ENST00000455727 RRP9O43818 475 aaKnown RBP17.35■□□□□ 0.37
LDLR-202ENST00000455727 XBP1P17861 261 aa17.35■□□□□ 0.37
LDLR-202ENST00000455727 SBK1Q52WX2 424 aa17.35■□□□□ 0.37
LDLR-202ENST00000455727 ZNF579Q8NAF0 562 aaKnown RBP17.35■□□□□ 0.37
LDLR-202ENST00000455727 KCNH3Q9ULD8 1083 aa17.35■□□□□ 0.37
LDLR-202ENST00000455727 USP17L12C9JPN9 530 aa17.35■□□□□ 0.37
LDLR-202ENST00000455727 USP17L21D6R901 530 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms