RNA–Protein interactions for RNA: ENST00000450867.1

COL3A1-203, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL3A1, Length 268 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-203ENST00000450867 SPDYE5A6NIY4 337 aa17.29■□□□□ 0.36
COL3A1-203ENST00000450867 INPP5BP32019 993 aa17.29■□□□□ 0.36
COL3A1-203ENST00000450867 MAP2K1Q02750 393 aaPredicted RBP17.29■□□□□ 0.36
COL3A1-203ENST00000450867 FOXP4Q8IVH2 680 aaPredicted RBP17.29■□□□□ 0.36
COL3A1-203ENST00000450867 STRBPQ96SI9 672 aaKnown RBP17.29■□□□□ 0.36
COL3A1-203ENST00000450867 PALD1Q9ULE6 856 aa17.29■□□□□ 0.36
COL3A1-203ENST00000450867 CTNND1O60716 968 aaKnown RBP17.28■□□□□ 0.36
COL3A1-203ENST00000450867 GJA5P36382 358 aa17.28■□□□□ 0.36
COL3A1-203ENST00000450867 KIF23Q02241 960 aaPredicted RBP17.28■□□□□ 0.36
COL3A1-203ENST00000450867 GRM1Q13255 1194 aa17.28■□□□□ 0.36
COL3A1-203ENST00000450867 GIMAP6Q6P9H5 292 aa17.28■□□□□ 0.36
COL3A1-203ENST00000450867 ZKSCAN4Q969J2 545 aaPredicted RBP17.28■□□□□ 0.36
COL3A1-203ENST00000450867 DNAJC18Q9H819 358 aa17.28■□□□□ 0.36
COL3A1-203ENST00000450867 ELP3Q9H9T3 547 aa17.28■□□□□ 0.36
COL3A1-203ENST00000450867 PRKAB2O43741 272 aa17.27■□□□□ 0.36
COL3A1-203ENST00000450867 HLA-DOAP06340 250 aa17.27■□□□□ 0.36
COL3A1-203ENST00000450867 TTC6Q86TZ1 520 aa17.27■□□□□ 0.36
COL3A1-203ENST00000450867 ERO1BQ86YB8 467 aa17.27■□□□□ 0.36
COL3A1-203ENST00000450867 SDR42E1Q8WUS8 393 aa17.27■□□□□ 0.36
COL3A1-203ENST00000450867 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.27■□□□□ 0.36
COL3A1-203ENST00000450867 M0R2C6 588 aa17.26■□□□□ 0.35
COL3A1-203ENST00000450867 GPAA1O43292 621 aa17.26■□□□□ 0.35
COL3A1-203ENST00000450867 SLURP2P0DP57 97 aa17.26■□□□□ 0.35
COL3A1-203ENST00000450867 GNAT2P19087 354 aa17.26■□□□□ 0.35
COL3A1-203ENST00000450867 TM4SF4P48230 202 aa17.26■□□□□ 0.35
COL3A1-203ENST00000450867 PPATQ06203 517 aa17.26■□□□□ 0.35
COL3A1-203ENST00000450867 GABPAQ06546 454 aa17.26■□□□□ 0.35
COL3A1-203ENST00000450867 PPIL2Q13356 520 aa17.26■□□□□ 0.35
COL3A1-203ENST00000450867 TTC22Q5TAA0 569 aa17.26■□□□□ 0.35
COL3A1-203ENST00000450867 SCYL3Q8IZE3 742 aa17.26■□□□□ 0.35
COL3A1-203ENST00000450867 OPTNQ96CV9 577 aa17.26■□□□□ 0.35
COL3A1-203ENST00000450867 SAP30BPQ9UHR5 308 aaKnown RBP17.26■□□□□ 0.35
COL3A1-203ENST00000450867 TESPA1A2RU30 521 aaPredicted RBP17.25■□□□□ 0.35
COL3A1-203ENST00000450867 MANSC4A6NHS7 340 aaPredicted RBP17.25■□□□□ 0.35
COL3A1-203ENST00000450867 GSG1L2A8MUP6 293 aa17.25■□□□□ 0.35
COL3A1-203ENST00000450867 INHBEP58166 350 aa17.25■□□□□ 0.35
COL3A1-203ENST00000450867 TATDN1Q6P1N9 297 aa17.25■□□□□ 0.35
COL3A1-203ENST00000450867 HELLSQ9NRZ9 838 aa17.25■□□□□ 0.35
COL3A1-203ENST00000450867 GINM1Q9NU53 330 aa17.25■□□□□ 0.35
COL3A1-203ENST00000450867 MCM9Q9NXL9 1143 aa17.25■□□□□ 0.35
COL3A1-203ENST00000450867 SERPINB13Q9UIV8 391 aa17.25■□□□□ 0.35
COL3A1-203ENST00000450867 SLC4A4Q9Y6R1 1079 aa17.25■□□□□ 0.35
COL3A1-203ENST00000450867 GREB1LQ9C091 1923 aaPredicted RBP17.25■□□□□ 0.35
COL3A1-203ENST00000450867 LOC285556D6RIA3 1793 aa17.25■□□□□ 0.35
COL3A1-203ENST00000450867 FAM196BA6NMK8 535 aa17.24■□□□□ 0.35
COL3A1-203ENST00000450867 TRIM6-TRIM34B2RNG4 842 aa17.24■□□□□ 0.35
COL3A1-203ENST00000450867 CA12O43570 354 aa17.24■□□□□ 0.35
COL3A1-203ENST00000450867 HSPA1AP0DMV8 641 aaKnown RBP17.24■□□□□ 0.35
COL3A1-203ENST00000450867 HSPA1BP0DMV9 641 aaKnown RBP17.24■□□□□ 0.35
COL3A1-203ENST00000450867 GSPT1P15170 499 aaKnown RBP17.24■□□□□ 0.35
COL3A1-203ENST00000450867 CAP2P40123 477 aa17.24■□□□□ 0.35
COL3A1-203ENST00000450867 PLCD1P51178 756 aa17.24■□□□□ 0.35
COL3A1-203ENST00000450867 SREBF2Q12772 1141 aa17.24■□□□□ 0.35
COL3A1-203ENST00000450867 RRP1BQ14684 758 aaKnown RBP17.24■□□□□ 0.35
COL3A1-203ENST00000450867 SBK1Q52WX2 424 aa17.24■□□□□ 0.35
COL3A1-203ENST00000450867 CNKSR2Q8WXI2 1034 aa17.24■□□□□ 0.35
COL3A1-203ENST00000450867 CCDC136Q96JN2 1154 aa17.24■□□□□ 0.35
COL3A1-203ENST00000450867 MS4A4AQ96JQ5 239 aa17.24■□□□□ 0.35
COL3A1-203ENST00000450867 SEC62Q99442 399 aaKnown RBP17.24■□□□□ 0.35
COL3A1-203ENST00000450867 SAGE1Q9NXZ1 904 aa17.24■□□□□ 0.35
COL3A1-203ENST00000450867 KCNH4Q9UQ05 1017 aa17.24■□□□□ 0.35
COL3A1-203ENST00000450867 C12orf60Q5U649 245 aa17.23■□□□□ 0.35
COL3A1-203ENST00000450867 OTUD5Q96G74 571 aa17.23■□□□□ 0.35
COL3A1-203ENST00000450867 EPB41L4AQ9HCS5 686 aaPredicted RBP17.23■□□□□ 0.35
COL3A1-203ENST00000450867 ARPP21Q9UBL0 812 aaPredicted RBP17.23■□□□□ 0.35
COL3A1-203ENST00000450867 ROBO3Q96MS0 1386 aa17.23■□□□□ 0.35
COL3A1-203ENST00000450867 LAMA4Q16363 1823 aa17.23■□□□□ 0.35
COL3A1-203ENST00000450867 A0A0D9SFI3 127 aa17.22■□□□□ 0.35
COL3A1-203ENST00000450867 IRF6O14896 467 aa17.22■□□□□ 0.35
COL3A1-203ENST00000450867 FOXP2O15409 715 aa17.22■□□□□ 0.35
COL3A1-203ENST00000450867 POLR3DP05423 398 aaPredicted RBP17.22■□□□□ 0.35
COL3A1-203ENST00000450867 PTPRAP18433 802 aa17.22■□□□□ 0.35
COL3A1-203ENST00000450867 SDSP20132 328 aa17.22■□□□□ 0.35
COL3A1-203ENST00000450867 CRACR2BQ8N4Y2 399 aaPredicted RBP17.22■□□□□ 0.35
COL3A1-203ENST00000450867 RILPL2Q969X0 211 aa17.22■□□□□ 0.35
COL3A1-203ENST00000450867 DDRGK1Q96HY6 314 aa17.22■□□□□ 0.35
COL3A1-203ENST00000450867 CFHR5Q9BXR6 569 aa17.22■□□□□ 0.35
COL3A1-203ENST00000450867 TBC1D2Q9BYX2 928 aa17.22■□□□□ 0.35
COL3A1-203ENST00000450867 PATL2C9JE40 543 aaKnown RBP17.21■□□□□ 0.35
COL3A1-203ENST00000450867 USP17L12C9JPN9 530 aa17.21■□□□□ 0.35
COL3A1-203ENST00000450867 USP17L21D6R901 530 aa17.21■□□□□ 0.35
COL3A1-203ENST00000450867 HIP1O00291 1037 aa17.21■□□□□ 0.35
COL3A1-203ENST00000450867 SHMT1P34896 483 aa17.21■□□□□ 0.35
COL3A1-203ENST00000450867 GTF2A2P52657 109 aa17.21■□□□□ 0.35
COL3A1-203ENST00000450867 NMIQ13287 307 aaPredicted RBP17.21■□□□□ 0.35
COL3A1-203ENST00000450867 MCMDC2Q4G0Z9 681 aa17.21■□□□□ 0.35
COL3A1-203ENST00000450867 CTR9Q6PD62 1173 aa17.21■□□□□ 0.35
COL3A1-203ENST00000450867 FAM227BQ96M60 508 aa17.21■□□□□ 0.35
COL3A1-203ENST00000450867 TRIM34Q9BYJ4 488 aa17.21■□□□□ 0.35
COL3A1-203ENST00000450867 PICK1Q9NRD5 415 aa17.21■□□□□ 0.35
COL3A1-203ENST00000450867 SWAP70Q9UH65 585 aa17.21■□□□□ 0.35
COL3A1-203ENST00000450867 CXCL11O14625 94 aa17.2■□□□□ 0.34
COL3A1-203ENST00000450867 FOXN1O15353 648 aa17.2■□□□□ 0.34
COL3A1-203ENST00000450867 ASNSP08243 561 aa17.2■□□□□ 0.34
COL3A1-203ENST00000450867 CYP2D6P10635 497 aa17.2■□□□□ 0.34
COL3A1-203ENST00000450867 EVX2Q03828 476 aa17.2■□□□□ 0.34
COL3A1-203ENST00000450867 MKRN3Q13064 507 aaKnown RBP17.2■□□□□ 0.34
COL3A1-203ENST00000450867 SNAPC2Q13487 334 aa17.2■□□□□ 0.34
COL3A1-203ENST00000450867 AMOTL1Q8IY63 956 aa17.2■□□□□ 0.34
COL3A1-203ENST00000450867 IFNL3Q8IZI9 196 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms