RNA–Protein interactions for RNA: ENST00000448078.1

USP49-205, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 3

Gene USP49, Length 480 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-205ENST00000448078 KIAA0232Q92628 1395 aa8.44□□□□□ -1.06
USP49-205ENST00000448078 KIF4AO95239 1232 aa8.43□□□□□ -1.06
USP49-205ENST00000448078 ELNP15502 786 aa8.43□□□□□ -1.06
USP49-205ENST00000448078 SLC15A2Q16348 729 aa8.43□□□□□ -1.06
USP49-205ENST00000448078 TXNDC11Q6PKC3 985 aa8.43□□□□□ -1.06
USP49-205ENST00000448078 CACTIN-AS1Q8N1I8 211 aa8.43□□□□□ -1.06
USP49-205ENST00000448078 CITED4Q96RK1 184 aa8.43□□□□□ -1.06
USP49-205ENST00000448078 HIRIP3Q9BW71 556 aaPredicted RBP8.43□□□□□ -1.06
USP49-205ENST00000448078 NIF3L1Q9GZT8 377 aa8.43□□□□□ -1.06
USP49-205ENST00000448078 MUC3BQ9H195 1237 aa8.43□□□□□ -1.06
USP49-205ENST00000448078 DCTN4Q9UJW0 460 aa8.43□□□□□ -1.06
USP49-205ENST00000448078 CLTCL1P53675 1640 aa8.43□□□□□ -1.06
USP49-205ENST00000448078 COL14A1Q05707 1796 aaKnown RBP8.43□□□□□ -1.06
USP49-205ENST00000448078 C1QTNF9BB2RNN3 333 aa8.42□□□□□ -1.06
USP49-205ENST00000448078 LINC01387J3KSC0 135 aa8.42□□□□□ -1.06
USP49-205ENST00000448078 PDE2AO00408 941 aaPredicted RBP8.42□□□□□ -1.06
USP49-205ENST00000448078 TRPA1O75762 1119 aa8.42□□□□□ -1.06
USP49-205ENST00000448078 ACPPP15309 386 aa8.42□□□□□ -1.06
USP49-205ENST00000448078 NUTM2GQ5VZR2 741 aa8.42□□□□□ -1.06
USP49-205ENST00000448078 FMR1NBQ8N0W7 255 aaPredicted RBP8.42□□□□□ -1.06
USP49-205ENST00000448078 CEP120Q8N960 986 aa8.42□□□□□ -1.06
USP49-205ENST00000448078 DCAF11Q8TEB1 546 aa8.42□□□□□ -1.06
USP49-205ENST00000448078 DMRTB1Q96MA1 342 aa8.42□□□□□ -1.06
USP49-205ENST00000448078 ZFYVE28Q9HCC9 887 aa8.42□□□□□ -1.06
USP49-205ENST00000448078 SALL4Q9UJQ4 1053 aa8.42□□□□□ -1.06
USP49-205ENST00000448078 TRAK1Q9UPV9 953 aa8.42□□□□□ -1.06
USP49-205ENST00000448078 ZBTB7CA1YPR0 619 aa8.41□□□□□ -1.06
USP49-205ENST00000448078 EXOC5O00471 708 aa8.41□□□□□ -1.06
USP49-205ENST00000448078 IGHA1P01876 353 aa8.41□□□□□ -1.06
USP49-205ENST00000448078 HMGB2P26583 209 aaKnown RBP8.41□□□□□ -1.06
USP49-205ENST00000448078 COL9A3Q14050 684 aaPredicted RBP8.41□□□□□ -1.06
USP49-205ENST00000448078 GRIK5Q16478 980 aa8.41□□□□□ -1.06
USP49-205ENST00000448078 TXNRD1Q16881 649 aa8.41□□□□□ -1.06
USP49-205ENST00000448078 TOM1L2Q6ZVM7 507 aa8.41□□□□□ -1.06
USP49-205ENST00000448078 DTWD1Q8N5C7 304 aa8.41□□□□□ -1.06
USP49-205ENST00000448078 CHRDQ9H2X0 955 aa8.41□□□□□ -1.06
USP49-205ENST00000448078 SH2B1Q9NRF2 756 aaPredicted RBP8.41□□□□□ -1.06
USP49-205ENST00000448078 PLCH1Q4KWH8 1693 aa8.4□□□□□ -1.06
USP49-205ENST00000448078 C9orf172C9J069 976 aa8.4□□□□□ -1.06
USP49-205ENST00000448078 CPNE3O75131 537 aaKnown RBP8.4□□□□□ -1.06
USP49-205ENST00000448078 GADD45BO75293 160 aaPredicted RBP8.4□□□□□ -1.06
USP49-205ENST00000448078 CHRNA4P43681 627 aa8.4□□□□□ -1.06
USP49-205ENST00000448078 GATA4P43694 442 aa8.4□□□□□ -1.06
USP49-205ENST00000448078 ORC1Q13415 861 aa8.4□□□□□ -1.06
USP49-205ENST00000448078 CD163Q86VB7 1156 aa8.4□□□□□ -1.06
USP49-205ENST00000448078 ZSCAN29Q8IWY8 852 aaPredicted RBP8.4□□□□□ -1.06
USP49-205ENST00000448078 SLC7A3Q8WY07 619 aa8.4□□□□□ -1.06
USP49-205ENST00000448078 MPHOSPH9Q99550 1183 aa8.4□□□□□ -1.06
USP49-205ENST00000448078 OVOS2A0A0G2JMS6 1433 aa8.39□□□□□ -1.07
USP49-205ENST00000448078 OVOS2A0A0J9YW53 1432 aa8.39□□□□□ -1.07
USP49-205ENST00000448078 OVOS2Q6IE36 1432 aa8.39□□□□□ -1.07
USP49-205ENST00000448078 ARL4DP49703 201 aa8.39□□□□□ -1.07
USP49-205ENST00000448078 NRG1Q02297 640 aaPredicted RBP8.39□□□□□ -1.07
USP49-205ENST00000448078 SHISA2Q6UWI4 295 aa8.39□□□□□ -1.07
USP49-205ENST00000448078 POP1Q99575 1024 aaKnown RBP8.39□□□□□ -1.07
USP49-205ENST00000448078 ZKSCAN3Q9BRR0 538 aa8.39□□□□□ -1.07
USP49-205ENST00000448078 CARD10Q9BWT7 1032 aa8.39□□□□□ -1.07
USP49-205ENST00000448078 LATS2Q9NRM7 1088 aa8.39□□□□□ -1.07
USP49-205ENST00000448078 DZANK1Q9NVP4 752 aa8.39□□□□□ -1.07
USP49-205ENST00000448078 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.39□□□□□ -1.07
USP49-205ENST00000448078 SSH2Q76I76 1423 aa8.38□□□□□ -1.07
USP49-205ENST00000448078 FMN2Q9NZ56 1722 aa8.38□□□□□ -1.07
USP49-205ENST00000448078 GCP02774 474 aa8.38□□□□□ -1.07
USP49-205ENST00000448078 FBXO11Q86XK2 927 aa8.38□□□□□ -1.07
USP49-205ENST00000448078 MAP4K3Q8IVH8 894 aa8.38□□□□□ -1.07
USP49-205ENST00000448078 RBCK1Q9BYM8 510 aa8.38□□□□□ -1.07
USP49-205ENST00000448078 EHD4Q9H223 541 aa8.38□□□□□ -1.07
USP49-205ENST00000448078 ECM1Q16610 540 aa8.37□□□□□ -1.07
USP49-205ENST00000448078 TMC7Q7Z402 723 aa8.37□□□□□ -1.07
USP49-205ENST00000448078 FAM129BQ96TA1 746 aa8.37□□□□□ -1.07
USP49-205ENST00000448078 SPOCK3Q9BQ16 436 aa8.37□□□□□ -1.07
USP49-205ENST00000448078 SRA1Q9HD15 236 aaKnown RBP8.37□□□□□ -1.07
USP49-205ENST00000448078 PIK3C2GO75747 1445 aa8.37□□□□□ -1.07
USP49-205ENST00000448078 EIF1AYO14602 144 aaKnown RBP8.36□□□□□ -1.07
USP49-205ENST00000448078 GPR182O15218 404 aa8.36□□□□□ -1.07
USP49-205ENST00000448078 MAPK8P45983 427 aa8.36□□□□□ -1.07
USP49-205ENST00000448078 PLCB3Q01970 1234 aa8.36□□□□□ -1.07
USP49-205ENST00000448078 USPL1Q5W0Q7 1092 aa8.36□□□□□ -1.07
USP49-205ENST00000448078 TMEM102Q8N9M5 508 aaPredicted RBP8.36□□□□□ -1.07
USP49-205ENST00000448078 HHIPQ96QV1 700 aa8.36□□□□□ -1.07
USP49-205ENST00000448078 CDK19Q9BWU1 502 aa8.36□□□□□ -1.07
USP49-205ENST00000448078 LIN7BQ9HAP6 207 aa8.36□□□□□ -1.07
USP49-205ENST00000448078 NPHS2Q9NP85 383 aa8.36□□□□□ -1.07
USP49-205ENST00000448078 NLRP2Q9NX02 1062 aa8.36□□□□□ -1.07
USP49-205ENST00000448078 CPDO75976 1380 aa8.35□□□□□ -1.07
USP49-205ENST00000448078 ACEP12821 1306 aa8.35□□□□□ -1.07
USP49-205ENST00000448078 THSD7AQ9UPZ6 1657 aa8.35□□□□□ -1.07
USP49-205ENST00000448078 HSPA6P17066 643 aa8.35□□□□□ -1.07
USP49-205ENST00000448078 EPHA1P21709 976 aa8.35□□□□□ -1.07
USP49-205ENST00000448078 IGF2-ASQ6U949 168 aa8.35□□□□□ -1.07
USP49-205ENST00000448078 BSNDQ8WZ55 320 aa8.35□□□□□ -1.07
USP49-205ENST00000448078 PDGFDQ9GZP0 370 aaPredicted RBP8.35□□□□□ -1.07
USP49-205ENST00000448078 SEC31BQ9NQW1 1179 aa8.35□□□□□ -1.07
USP49-205ENST00000448078 MAP3K5Q99683 1374 aa8.35□□□□□ -1.07
USP49-205ENST00000448078 H3BRJ5 948 aa8.34□□□□□ -1.07
USP49-205ENST00000448078 FSCN2O14926 492 aa8.34□□□□□ -1.07
USP49-205ENST00000448078 IKBKEQ14164 716 aa8.34□□□□□ -1.07
USP49-205ENST00000448078 GALNT12Q8IXK2 581 aa8.34□□□□□ -1.07
USP49-205ENST00000448078 MARCH10Q8NA82 808 aaPredicted RBP8.34□□□□□ -1.07
USP49-205ENST00000448078 KCNH5Q8NCM2 988 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms