RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 TRIM34Q9BYJ4 488 aa18.77■□□□□ 0.6
USP40-206ENST00000443711 SERPINB13Q9UIV8 391 aa18.77■□□□□ 0.6
USP40-206ENST00000443711 NECTIN1Q15223 517 aa18.76■□□□□ 0.59
USP40-206ENST00000443711 RNF20Q5VTR2 975 aa18.76■□□□□ 0.59
USP40-206ENST00000443711 DCAF15Q66K64 600 aa18.76■□□□□ 0.59
USP40-206ENST00000443711 DLK2Q6UY11 383 aa18.76■□□□□ 0.59
USP40-206ENST00000443711 HERC5Q9UII4 1024 aaKnown RBP18.76■□□□□ 0.59
USP40-206ENST00000443711 LAMA4Q16363 1823 aa18.76■□□□□ 0.59
USP40-206ENST00000443711 SIPA1L1O43166 1804 aa18.75■□□□□ 0.59
USP40-206ENST00000443711 TRAF5O00463 557 aa18.75■□□□□ 0.59
USP40-206ENST00000443711 TBC1D12O60347 775 aa18.75■□□□□ 0.59
USP40-206ENST00000443711 ITGBL1O95965 494 aaPredicted RBP18.75■□□□□ 0.59
USP40-206ENST00000443711 MCCP23508 829 aa18.75■□□□□ 0.59
USP40-206ENST00000443711 HAND2P61296 217 aa18.75■□□□□ 0.59
USP40-206ENST00000443711 CTDSPL2Q05D32 466 aa18.75■□□□□ 0.59
USP40-206ENST00000443711 METTL16Q86W50 562 aaKnown RBP18.75■□□□□ 0.59
USP40-206ENST00000443711 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.75■□□□□ 0.59
USP40-206ENST00000443711 SWAP70Q9UH65 585 aa18.75■□□□□ 0.59
USP40-206ENST00000443711 ROBO3Q96MS0 1386 aa18.74■□□□□ 0.59
USP40-206ENST00000443711 SLC27A2O14975 620 aa18.74■□□□□ 0.59
USP40-206ENST00000443711 CYP21A2P08686 494 aa18.74■□□□□ 0.59
USP40-206ENST00000443711 HSPA4P34932 840 aa18.74■□□□□ 0.59
USP40-206ENST00000443711 MAP3K10Q02779 954 aa18.74■□□□□ 0.59
USP40-206ENST00000443711 EVX2Q03828 476 aa18.74■□□□□ 0.59
USP40-206ENST00000443711 GABPAQ06546 454 aa18.74■□□□□ 0.59
USP40-206ENST00000443711 CREB3L3Q68CJ9 461 aa18.74■□□□□ 0.59
USP40-206ENST00000443711 C16orf86Q6ZW13 317 aa18.74■□□□□ 0.59
USP40-206ENST00000443711 MIGA2Q7L4E1 593 aa18.74■□□□□ 0.59
USP40-206ENST00000443711 DYNLL2Q96FJ2 89 aa18.74■□□□□ 0.59
USP40-206ENST00000443711 UPF2Q9HAU5 1272 aaKnown RBP18.74■□□□□ 0.59
USP40-206ENST00000443711 ZNF287Q9HBT7 754 aa18.74■□□□□ 0.59
USP40-206ENST00000443711 TRPM7Q96QT4 1865 aa18.73■□□□□ 0.59
USP40-206ENST00000443711 MYH8P13535 1937 aa18.73■□□□□ 0.59
USP40-206ENST00000443711 SMIM22K7EJ46 135 aa18.73■□□□□ 0.59
USP40-206ENST00000443711 ZKSCAN1P17029 563 aaPredicted RBP18.73■□□□□ 0.59
USP40-206ENST00000443711 PDE4BQ07343 736 aa18.73■□□□□ 0.59
USP40-206ENST00000443711 FSTL1Q12841 308 aa18.73■□□□□ 0.59
USP40-206ENST00000443711 STK11IPQ8N1F8 1099 aa18.73■□□□□ 0.59
USP40-206ENST00000443711 ZNF341Q9BYN7 854 aa18.73■□□□□ 0.59
USP40-206ENST00000443711 RNF41Q9H4P4 317 aaPredicted RBP18.73■□□□□ 0.59
USP40-206ENST00000443711 PPP1R12BO60237 982 aaPredicted RBP18.72■□□□□ 0.59
USP40-206ENST00000443711 PCP11498 1178 aaKnown RBP18.72■□□□□ 0.59
USP40-206ENST00000443711 CDK8P49336 464 aa18.72■□□□□ 0.59
USP40-206ENST00000443711 AKNAD1Q5T1N1 836 aa18.72■□□□□ 0.59
USP40-206ENST00000443711 MFSD6Q6ZSS7 791 aa18.72■□□□□ 0.59
USP40-206ENST00000443711 MKNK2Q9HBH9 465 aa18.72■□□□□ 0.59
USP40-206ENST00000443711 FAM196BA6NMK8 535 aa18.71■□□□□ 0.59
USP40-206ENST00000443711 FMR1Q06787 632 aaKnown RBP eCLIP18.71■□□□□ 0.59
USP40-206ENST00000443711 TATDN1Q6P1N9 297 aa18.71■□□□□ 0.59
USP40-206ENST00000443711 STAG1Q8WVM7 1258 aa18.71■□□□□ 0.59
USP40-206ENST00000443711 KCNB2Q92953 911 aa18.71■□□□□ 0.59
USP40-206ENST00000443711 NBPF3Q9H094 633 aa18.71■□□□□ 0.59
USP40-206ENST00000443711 DNAJC18Q9H819 358 aa18.71■□□□□ 0.59
USP40-206ENST00000443711 ZNF408Q9H9D4 720 aa18.71■□□□□ 0.59
USP40-206ENST00000443711 SSC5DA1L4H1 1573 aa18.71■□□□□ 0.59
USP40-206ENST00000443711 ORC4O43929 436 aa18.7■□□□□ 0.58
USP40-206ENST00000443711 USP2O75604 605 aaPredicted RBP18.7■□□□□ 0.58
USP40-206ENST00000443711 FGRP09769 529 aa18.7■□□□□ 0.58
USP40-206ENST00000443711 SLURP2P0DP57 97 aa18.7■□□□□ 0.58
USP40-206ENST00000443711 SHMT1P34896 483 aa18.7■□□□□ 0.58
USP40-206ENST00000443711 PRKG1Q13976 671 aa18.7■□□□□ 0.58
USP40-206ENST00000443711 TTLL12Q14166 644 aaPredicted RBP18.7■□□□□ 0.58
USP40-206ENST00000443711 TSGA10IPQ3SY00 556 aa18.7■□□□□ 0.58
USP40-206ENST00000443711 ARMC9Q7Z3E5 817 aa18.7■□□□□ 0.58
USP40-206ENST00000443711 TBC1D10CQ8IV04 446 aa18.7■□□□□ 0.58
USP40-206ENST00000443711 SLC44A5Q8NCS7 719 aa18.7■□□□□ 0.58
USP40-206ENST00000443711 CNNM2Q9H8M5 875 aa18.7■□□□□ 0.58
USP40-206ENST00000443711 TOMM22Q9NS69 142 aa18.7■□□□□ 0.58
USP40-206ENST00000443711 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.7■□□□□ 0.58
USP40-206ENST00000443711 PASKQ96RG2 1323 aa18.7■□□□□ 0.58
USP40-206ENST00000443711 E7EWF7 191 aa18.69■□□□□ 0.58
USP40-206ENST00000443711 CELF2O95319 508 aaKnown RBP18.69■□□□□ 0.58
USP40-206ENST00000443711 IREB2P48200 963 aaKnown RBP18.69■□□□□ 0.58
USP40-206ENST00000443711 FKBP1BP68106 108 aa18.69■□□□□ 0.58
USP40-206ENST00000443711 TRDNQ13061 729 aa18.69■□□□□ 0.58
USP40-206ENST00000443711 KRT32Q14532 448 aa18.69■□□□□ 0.58
USP40-206ENST00000443711 ZNF444Q8N0Y2 327 aaPredicted RBP18.69■□□□□ 0.58
USP40-206ENST00000443711 CCDC17Q96LX7 622 aa18.69■□□□□ 0.58
USP40-206ENST00000443711 KRT23Q9C075 422 aa18.69■□□□□ 0.58
USP40-206ENST00000443711 INCENPQ9NQS7 918 aa18.69■□□□□ 0.58
USP40-206ENST00000443711 ZNF112Q9UJU3 913 aa18.69■□□□□ 0.58
USP40-206ENST00000443711 TACC3Q9Y6A5 838 aa18.69■□□□□ 0.58
USP40-206ENST00000443711 PHF20L1A8MW92 1017 aa18.68■□□□□ 0.58
USP40-206ENST00000443711 PRDM1O75626 825 aa18.68■□□□□ 0.58
USP40-206ENST00000443711 NT5C2P49902 561 aa18.68■□□□□ 0.58
USP40-206ENST00000443711 CERKLQ49MI3 558 aaPredicted RBP18.68■□□□□ 0.58
USP40-206ENST00000443711 RASEFQ8IZ41 740 aa18.68■□□□□ 0.58
USP40-206ENST00000443711 C2orf69Q8N8R5 385 aa18.68■□□□□ 0.58
USP40-206ENST00000443711 KLRG1Q96E93 195 aa18.68■□□□□ 0.58
USP40-206ENST00000443711 C22orf23Q9BZE7 217 aa18.68■□□□□ 0.58
USP40-206ENST00000443711 ANGEL1Q9UNK9 670 aaKnown RBP18.68■□□□□ 0.58
USP40-206ENST00000443711 SNX14Q9Y5W7 946 aa18.68■□□□□ 0.58
USP40-206ENST00000443711 TAF6LQ9Y6J9 622 aa18.68■□□□□ 0.58
USP40-206ENST00000443711 CTNND1O60716 968 aaKnown RBP18.67■□□□□ 0.58
USP40-206ENST00000443711 RASA1P20936 1047 aa18.67■□□□□ 0.58
USP40-206ENST00000443711 ANAPC15P60006 121 aa18.67■□□□□ 0.58
USP40-206ENST00000443711 MAP3K9P80192 1104 aa18.67■□□□□ 0.58
USP40-206ENST00000443711 MAP3K11Q16584 847 aa18.67■□□□□ 0.58
USP40-206ENST00000443711 RRP12Q5JTH9 1297 aaKnown RBP18.67■□□□□ 0.58
USP40-206ENST00000443711 NCOA7Q8NI08 942 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms