RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 PTPRAP18433 802 aa14.8□□□□□ -0.04
PTPRF-208ENST00000437607 TIMM10P62072 90 aa14.8□□□□□ -0.04
PTPRF-208ENST00000437607 RASGRF1Q13972 1273 aa14.8□□□□□ -0.04
PTPRF-208ENST00000437607 PRRT2Q7Z6L0 340 aaPredicted RBP14.8□□□□□ -0.04
PTPRF-208ENST00000437607 SCYL3Q8IZE3 742 aa14.8□□□□□ -0.04
PTPRF-208ENST00000437607 ZNF384Q8TF68 577 aa14.8□□□□□ -0.04
PTPRF-208ENST00000437607 DDX4Q9NQI0 724 aaKnown RBP14.8□□□□□ -0.04
PTPRF-208ENST00000437607 GABRQQ9UN88 632 aa14.8□□□□□ -0.04
PTPRF-208ENST00000437607 AFG3L2Q9Y4W6 797 aa14.8□□□□□ -0.04
PTPRF-208ENST00000437607 GRK4P32298 578 aa14.79□□□□□ -0.04
PTPRF-208ENST00000437607 PRKCZQ05513 592 aa14.79□□□□□ -0.04
PTPRF-208ENST00000437607 UBE2Q1Q7Z7E8 422 aa14.79□□□□□ -0.04
PTPRF-208ENST00000437607 RHPN1Q8TCX5 695 aa14.79□□□□□ -0.04
PTPRF-208ENST00000437607 RAET1EQ8TD07 263 aa14.79□□□□□ -0.04
PTPRF-208ENST00000437607 FAM163AQ96GL9 167 aaPredicted RBP14.79□□□□□ -0.04
PTPRF-208ENST00000437607 PARK7Q99497 189 aaKnown RBP14.79□□□□□ -0.04
PTPRF-208ENST00000437607 BCL11AQ9H165 835 aa14.79□□□□□ -0.04
PTPRF-208ENST00000437607 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.79□□□□□ -0.04
PTPRF-208ENST00000437607 ZHX2Q9Y6X8 837 aa14.79□□□□□ -0.04
PTPRF-208ENST00000437607 MYH1P12882 1939 aa14.78□□□□□ -0.04
PTPRF-208ENST00000437607 PDS5AQ29RF7 1337 aaKnown RBP14.78□□□□□ -0.04
PTPRF-208ENST00000437607 CCL5P13501 91 aa14.78□□□□□ -0.04
PTPRF-208ENST00000437607 HOXD10P28358 340 aa14.78□□□□□ -0.04
PTPRF-208ENST00000437607 MROH7-TTC4A0A0A0MT08 1334 aa14.77□□□□□ -0.04
PTPRF-208ENST00000437607 SMARCA5O60264 1052 aaPredicted RBP14.77□□□□□ -0.05
PTPRF-208ENST00000437607 BTDP43251 543 aa14.77□□□□□ -0.05
PTPRF-208ENST00000437607 GJA8P48165 433 aa14.77□□□□□ -0.05
PTPRF-208ENST00000437607 CCDC84Q86UT8 332 aaPredicted RBP14.77□□□□□ -0.05
PTPRF-208ENST00000437607 CLASRPQ8N2M8 674 aaKnown RBP14.77□□□□□ -0.05
PTPRF-208ENST00000437607 ZGPATQ8N5A5 531 aaKnown RBP14.77□□□□□ -0.05
PTPRF-208ENST00000437607 XAGE2Q96GT9 111 aa14.77□□□□□ -0.05
PTPRF-208ENST00000437607 IL1RAPL2Q9NP60 686 aa14.77□□□□□ -0.05
PTPRF-208ENST00000437607 ABCF2Q9UG63 623 aa14.77□□□□□ -0.05
PTPRF-208ENST00000437607 A0A1B0GUL7 405 aa14.76□□□□□ -0.05
PTPRF-208ENST00000437607 GJB1P08034 283 aa14.76□□□□□ -0.05
PTPRF-208ENST00000437607 FCGRTP55899 365 aa14.76□□□□□ -0.05
PTPRF-208ENST00000437607 RHBDL3P58872 404 aa14.76□□□□□ -0.05
PTPRF-208ENST00000437607 TFCP2Q12800 502 aa14.76□□□□□ -0.05
PTPRF-208ENST00000437607 PICALMQ13492 652 aa14.76□□□□□ -0.05
PTPRF-208ENST00000437607 GADL1Q6ZQY3 521 aa14.76□□□□□ -0.05
PTPRF-208ENST00000437607 FASTKD5Q7L8L6 764 aaKnown RBP14.76□□□□□ -0.05
PTPRF-208ENST00000437607 DZIP1Q86YF9 867 aaKnown RBP14.76□□□□□ -0.05
PTPRF-208ENST00000437607 ZSCAN29Q8IWY8 852 aaPredicted RBP14.76□□□□□ -0.05
PTPRF-208ENST00000437607 PICK1Q9NRD5 415 aa14.76□□□□□ -0.05
PTPRF-208ENST00000437607 SLC45A1Q9Y2W3 748 aa14.76□□□□□ -0.05
PTPRF-208ENST00000437607 LAMA3Q16787 3333 aa14.76□□□□□ -0.05
PTPRF-208ENST00000437607 GPR75-ASB3A0A0A6YYF3 556 aa14.75□□□□□ -0.05
PTPRF-208ENST00000437607 FAM196BA6NMK8 535 aa14.75□□□□□ -0.05
PTPRF-208ENST00000437607 CTNND1O60716 968 aaKnown RBP14.75□□□□□ -0.05
PTPRF-208ENST00000437607 MECOMQ03112 1051 aa14.75□□□□□ -0.05
PTPRF-208ENST00000437607 PI16Q6UXB8 463 aa14.75□□□□□ -0.05
PTPRF-208ENST00000437607 GPATCH3Q96I76 525 aa14.75□□□□□ -0.05
PTPRF-208ENST00000437607 RNF208Q9H0X6 261 aa14.75□□□□□ -0.05
PTPRF-208ENST00000437607 UNC93B1Q9H1C4 597 aa14.75□□□□□ -0.05
PTPRF-208ENST00000437607 COL6A3P12111 3177 aa14.75□□□□□ -0.05
PTPRF-208ENST00000437607 FRMPD3Q5JV73 1810 aa14.75□□□□□ -0.05
PTPRF-208ENST00000437607 DNAH12Q6ZR08 3092 aa14.74□□□□□ -0.05
PTPRF-208ENST00000437607 IFIT2P09913 472 aaKnown RBP14.74□□□□□ -0.05
PTPRF-208ENST00000437607 FLT3LGP49771 235 aa14.74□□□□□ -0.05
PTPRF-208ENST00000437607 TREML2Q5T2D2 321 aa14.74□□□□□ -0.05
PTPRF-208ENST00000437607 CHRDL2Q6WN34 429 aa14.74□□□□□ -0.05
PTPRF-208ENST00000437607 AACSQ86V21 672 aa14.74□□□□□ -0.05
PTPRF-208ENST00000437607 SKAP1Q86WV1 359 aa14.74□□□□□ -0.05
PTPRF-208ENST00000437607 SLAIN1Q8ND83 568 aa14.74□□□□□ -0.05
PTPRF-208ENST00000437607 NKX2-3Q8TAU0 364 aa14.74□□□□□ -0.05
PTPRF-208ENST00000437607 DPF3Q92784 378 aa14.74□□□□□ -0.05
PTPRF-208ENST00000437607 HMG20BQ9P0W2 317 aa14.74□□□□□ -0.05
PTPRF-208ENST00000437607 DDX60LQ5H9U9 1706 aaKnown RBP14.74□□□□□ -0.05
PTPRF-208ENST00000437607 COL2A1P02458 1487 aaPredicted RBP14.74□□□□□ -0.05
PTPRF-208ENST00000437607 TRIM75PA6NK02 468 aa14.73□□□□□ -0.05
PTPRF-208ENST00000437607 ADCY3O60266 1144 aa14.73□□□□□ -0.05
PTPRF-208ENST00000437607 ELNP15502 786 aa14.73□□□□□ -0.05
PTPRF-208ENST00000437607 PDE4AP27815 886 aa14.73□□□□□ -0.05
PTPRF-208ENST00000437607 UBXN2AP68543 259 aa14.73□□□□□ -0.05
PTPRF-208ENST00000437607 SPTY2D1Q68D10 685 aaPredicted RBP14.73□□□□□ -0.05
PTPRF-208ENST00000437607 ERICH6Q7L0X2 663 aa14.73□□□□□ -0.05
PTPRF-208ENST00000437607 SLF2Q8IX21 1173 aa14.73□□□□□ -0.05
PTPRF-208ENST00000437607 U2AF1L4Q8WU68 220 aaKnown RBP14.73□□□□□ -0.05
PTPRF-208ENST00000437607 NSUN4Q96CB9 384 aaKnown RBP14.73□□□□□ -0.05
PTPRF-208ENST00000437607 PRO3102Q9H379 93 aa14.73□□□□□ -0.05
PTPRF-208ENST00000437607 RBM27Q9P2N5 1060 aaKnown RBP14.73□□□□□ -0.05
PTPRF-208ENST00000437607 BIN2Q9UBW5 565 aaPredicted RBP14.73□□□□□ -0.05
PTPRF-208ENST00000437607 AGTPBP1Q9UPW5 1226 aa14.73□□□□□ -0.05
PTPRF-208ENST00000437607 AKAP2Q9Y2D5 859 aa14.73□□□□□ -0.05
PTPRF-208ENST00000437607 TBC1D12O60347 775 aa14.72□□□□□ -0.05
PTPRF-208ENST00000437607 NPM3O75607 178 aaKnown RBP14.72□□□□□ -0.05
PTPRF-208ENST00000437607 MX1P20591 662 aa14.72□□□□□ -0.05
PTPRF-208ENST00000437607 RRP1BQ14684 758 aaKnown RBP14.72□□□□□ -0.05
PTPRF-208ENST00000437607 TNNI3KQ59H18 835 aa14.72□□□□□ -0.05
PTPRF-208ENST00000437607 TBC1D9Q6ZT07 1266 aa14.72□□□□□ -0.05
PTPRF-208ENST00000437607 GPR108Q9NPR9 543 aa14.72□□□□□ -0.05
PTPRF-208ENST00000437607 FPGT-TNNI3KV9GXZ4 949 aa14.72□□□□□ -0.05
PTPRF-208ENST00000437607 TNPO2O14787 897 aaKnown RBP14.71□□□□□ -0.05
PTPRF-208ENST00000437607 SGPL1O95470 568 aa14.71□□□□□ -0.05
PTPRF-208ENST00000437607 INHAP05111 366 aa14.71□□□□□ -0.05
PTPRF-208ENST00000437607 ARID4AP29374 1257 aaPredicted RBP14.71□□□□□ -0.05
PTPRF-208ENST00000437607 IRF5Q13568 498 aa14.71□□□□□ -0.05
PTPRF-208ENST00000437607 ANKRD13CQ8N6S4 541 aa14.71□□□□□ -0.05
PTPRF-208ENST00000437607 PXYLP1Q8TE99 480 aa14.71□□□□□ -0.05
PTPRF-208ENST00000437607 NEUROD6Q96NK8 337 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms