RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 RTN1Q16799 776 aa15.71■□□□□ 0.11
COL6A3-207ENST00000433762 METTL16Q86W50 562 aaKnown RBP15.71■□□□□ 0.11
COL6A3-207ENST00000433762 RAB11FIP4Q86YS3 637 aa15.71■□□□□ 0.11
COL6A3-207ENST00000433762 VSTM4Q8IW00 320 aa15.71■□□□□ 0.11
COL6A3-207ENST00000433762 DENND2AQ9ULE3 1009 aa15.71■□□□□ 0.11
COL6A3-207ENST00000433762 MDM2Q00987 491 aaPredicted RBP15.7■□□□□ 0.1
COL6A3-207ENST00000433762 WTAPQ15007 396 aa15.7■□□□□ 0.1
COL6A3-207ENST00000433762 CCDC152Q4G0S7 254 aa15.7■□□□□ 0.1
COL6A3-207ENST00000433762 MLKLQ8NB16 471 aa15.7■□□□□ 0.1
COL6A3-207ENST00000433762 CNNM3Q8NE01 707 aa15.7■□□□□ 0.1
COL6A3-207ENST00000433762 CCDC34Q96HJ3 373 aa15.7■□□□□ 0.1
COL6A3-207ENST00000433762 MPHOSPH8Q99549 860 aa15.7■□□□□ 0.1
COL6A3-207ENST00000433762 FAM177BA6PVY3 158 aa15.7■□□□□ 0.1
COL6A3-207ENST00000433762 UBASH3AP57075 661 aa15.7■□□□□ 0.1
COL6A3-207ENST00000433762 UTP14AQ9BVJ6 771 aaKnown RBP15.7■□□□□ 0.1
COL6A3-207ENST00000433762 SRRTQ9BXP5 876 aaKnown RBP15.7■□□□□ 0.1
COL6A3-207ENST00000433762 SLC26A6Q9BXS9 759 aa15.7■□□□□ 0.1
COL6A3-207ENST00000433762 RNF26Q9BY78 433 aaPredicted RBP15.7■□□□□ 0.1
COL6A3-207ENST00000433762 DDX41Q9UJV9 622 aaKnown RBP15.7■□□□□ 0.1
COL6A3-207ENST00000433762 GOLGA6L9A6NEM1 432 aa15.69■□□□□ 0.1
COL6A3-207ENST00000433762 NUTM2BA6NNL0 878 aaPredicted RBP15.69■□□□□ 0.1
COL6A3-207ENST00000433762 NUTM2EB1AL46 878 aaPredicted RBP15.69■□□□□ 0.1
COL6A3-207ENST00000433762 BIN1O00499 593 aa15.69■□□□□ 0.1
COL6A3-207ENST00000433762 RGL2O15211 777 aa15.69■□□□□ 0.1
COL6A3-207ENST00000433762 BMP15O95972 392 aa15.69■□□□□ 0.1
COL6A3-207ENST00000433762 NUTM2AQ8IVF1 878 aaPredicted RBP15.69■□□□□ 0.1
COL6A3-207ENST00000433762 NKX2-3Q8TAU0 364 aa15.69■□□□□ 0.1
COL6A3-207ENST00000433762 CDC5LQ99459 802 aaKnown RBP15.69■□□□□ 0.1
COL6A3-207ENST00000433762 SENP2Q9HC62 589 aa15.69■□□□□ 0.1
COL6A3-207ENST00000433762 BTG4Q9NY30 223 aa15.69■□□□□ 0.1
COL6A3-207ENST00000433762 FBXO2Q9UK22 296 aaPredicted RBP15.69■□□□□ 0.1
COL6A3-207ENST00000433762 EXOC5O00471 708 aa15.69■□□□□ 0.1
COL6A3-207ENST00000433762 ADAMTS2O95450 1211 aa15.69■□□□□ 0.1
COL6A3-207ENST00000433762 ZSCAN20P17040 1043 aaPredicted RBP15.69■□□□□ 0.1
COL6A3-207ENST00000433762 SARSP49591 514 aaKnown RBP15.69■□□□□ 0.1
COL6A3-207ENST00000433762 CCDC93Q567U6 631 aa15.69■□□□□ 0.1
COL6A3-207ENST00000433762 DIS3L2Q8IYB7 885 aaKnown RBP15.69■□□□□ 0.1
COL6A3-207ENST00000433762 CRACR2BQ8N4Y2 399 aaPredicted RBP15.69■□□□□ 0.1
COL6A3-207ENST00000433762 SRPRBQ9Y5M8 271 aaKnown RBP15.69■□□□□ 0.1
COL6A3-207ENST00000433762 ZNF804BA4D1E1 1349 aa15.68■□□□□ 0.1
COL6A3-207ENST00000433762 ZBTB22O15209 634 aa15.68■□□□□ 0.1
COL6A3-207ENST00000433762 LMOD1P29536 600 aaPredicted RBP15.68■□□□□ 0.1
COL6A3-207ENST00000433762 IGHMBP2P38935 993 aaKnown RBP15.68■□□□□ 0.1
COL6A3-207ENST00000433762 STK11IPQ8N1F8 1099 aa15.68■□□□□ 0.1
COL6A3-207ENST00000433762 ENOX1Q8TC92 643 aaKnown RBP15.68■□□□□ 0.1
COL6A3-207ENST00000433762 ZNF592Q92610 1267 aa15.68■□□□□ 0.1
COL6A3-207ENST00000433762 ZNF215Q9UL58 517 aaPredicted RBP15.68■□□□□ 0.1
COL6A3-207ENST00000433762 MYH2Q9UKX2 1941 aa15.68■□□□□ 0.1
COL6A3-207ENST00000433762 DUOX1Q9NRD9 1551 aa15.68■□□□□ 0.1
COL6A3-207ENST00000433762 SCN7AQ01118 1682 aa15.68■□□□□ 0.1
COL6A3-207ENST00000433762 XBP1P17861 261 aa15.68■□□□□ 0.1
COL6A3-207ENST00000433762 TDO2P48775 406 aa15.68■□□□□ 0.1
COL6A3-207ENST00000433762 NT5C2P49902 561 aa15.68■□□□□ 0.1
COL6A3-207ENST00000433762 PNOCQ13519 176 aa15.68■□□□□ 0.1
COL6A3-207ENST00000433762 LONRF3Q496Y0 759 aa15.68■□□□□ 0.1
COL6A3-207ENST00000433762 SPATA20Q8TB22 786 aa15.68■□□□□ 0.1
COL6A3-207ENST00000433762 ARMT1Q9H993 441 aa15.68■□□□□ 0.1
COL6A3-207ENST00000433762 CCDC87Q9NVE4 849 aa15.68■□□□□ 0.1
COL6A3-207ENST00000433762 PCDHA5Q9Y5H7 936 aa15.68■□□□□ 0.1
COL6A3-207ENST00000433762 CACNA1SQ13698 1873 aa15.67■□□□□ 0.1
COL6A3-207ENST00000433762 ZSCAN12O43309 604 aa15.67■□□□□ 0.1
COL6A3-207ENST00000433762 SERPINC1P01008 464 aa15.67■□□□□ 0.1
COL6A3-207ENST00000433762 RXRAP19793 462 aa15.67■□□□□ 0.1
COL6A3-207ENST00000433762 TOB1P50616 345 aaPredicted RBP15.67■□□□□ 0.1
COL6A3-207ENST00000433762 ETF1P62495 437 aaKnown RBP15.67■□□□□ 0.1
COL6A3-207ENST00000433762 FAM193AP78312 1265 aa15.67■□□□□ 0.1
COL6A3-207ENST00000433762 CTDSPL2Q05D32 466 aa15.67■□□□□ 0.1
COL6A3-207ENST00000433762 POSTNQ15063 836 aa15.67■□□□□ 0.1
COL6A3-207ENST00000433762 TRMT1Q9NXH9 659 aaKnown RBP15.67■□□□□ 0.1
COL6A3-207ENST00000433762 SLC4A4Q9Y6R1 1079 aa15.67■□□□□ 0.1
COL6A3-207ENST00000433762 COL5A3P25940 1745 aaPredicted RBP15.67■□□□□ 0.1
COL6A3-207ENST00000433762 ARHGAP6O43182 974 aa15.67■□□□□ 0.1
COL6A3-207ENST00000433762 ERCC5P28715 1186 aaPredicted RBP15.67■□□□□ 0.1
COL6A3-207ENST00000433762 GABPB1Q06547 395 aaPredicted RBP15.67■□□□□ 0.1
COL6A3-207ENST00000433762 TBX2Q13207 712 aaPredicted RBP15.67■□□□□ 0.1
COL6A3-207ENST00000433762 SUSD4Q5VX71 490 aa15.67■□□□□ 0.1
COL6A3-207ENST00000433762 FANCBQ8NB91 859 aa15.67■□□□□ 0.1
COL6A3-207ENST00000433762 FBXW7Q969H0 707 aa15.67■□□□□ 0.1
COL6A3-207ENST00000433762 TACC3Q9Y6A5 838 aa15.67■□□□□ 0.1
COL6A3-207ENST00000433762 CASZ1Q86V15 1759 aa15.66■□□□□ 0.1
COL6A3-207ENST00000433762 LAMB1P07942 1786 aa15.66■□□□□ 0.1
COL6A3-207ENST00000433762 TOP1P11387 765 aaKnown RBP15.66■□□□□ 0.1
COL6A3-207ENST00000433762 ZNF18P17022 549 aa15.66■□□□□ 0.1
COL6A3-207ENST00000433762 MORC3Q14149 939 aa15.66■□□□□ 0.1
COL6A3-207ENST00000433762 ZNF654Q8IZM8 581 aa15.66■□□□□ 0.1
COL6A3-207ENST00000433762 ESR2Q92731 530 aa15.66■□□□□ 0.1
COL6A3-207ENST00000433762 CLIC6Q96NY7 704 aa15.66■□□□□ 0.1
COL6A3-207ENST00000433762 PRDM4Q9UKN5 801 aa15.66■□□□□ 0.1
COL6A3-207ENST00000433762 MAST2Q6P0Q8 1798 aa15.66■□□□□ 0.1
COL6A3-207ENST00000433762 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.65■□□□□ 0.1
COL6A3-207ENST00000433762 BTBD18B2RXH4 712 aa15.65■□□□□ 0.1
COL6A3-207ENST00000433762 IGSF3O75054 1194 aa15.65■□□□□ 0.1
COL6A3-207ENST00000433762 FGRP09769 529 aa15.65■□□□□ 0.1
COL6A3-207ENST00000433762 CALM1P0DP23 149 aa15.65■□□□□ 0.1
COL6A3-207ENST00000433762 CALM2P0DP24 149 aa15.65■□□□□ 0.1
COL6A3-207ENST00000433762 CALM3P0DP25 149 aa15.65■□□□□ 0.1
COL6A3-207ENST00000433762 ATP1A3P13637 1013 aa15.65■□□□□ 0.1
COL6A3-207ENST00000433762 PPARAQ07869 468 aa15.65■□□□□ 0.1
COL6A3-207ENST00000433762 SEC23AQ15436 765 aa15.65■□□□□ 0.1
COL6A3-207ENST00000433762 CFAP100Q494V2 611 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms