RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 SH3RF3Q8TEJ3 882 aaPredicted RBP17.82■□□□□ 0.44
SDC1-204ENST00000429035 GABRQQ9UN88 632 aa17.82■□□□□ 0.44
SDC1-204ENST00000429035 FPGT-TNNI3KV9GXZ4 949 aa17.82■□□□□ 0.44
SDC1-204ENST00000429035 DOCK3Q8IZD9 2030 aa17.82■□□□□ 0.44
SDC1-204ENST00000429035 COL2A1P02458 1487 aaPredicted RBP17.82■□□□□ 0.44
SDC1-204ENST00000429035 TNPO2O14787 897 aaKnown RBP17.81■□□□□ 0.44
SDC1-204ENST00000429035 SURF6O75683 361 aaKnown RBP17.81■□□□□ 0.44
SDC1-204ENST00000429035 UBXN2AP68543 259 aa17.81■□□□□ 0.44
SDC1-204ENST00000429035 AGTPBP1Q9UPW5 1226 aa17.81■□□□□ 0.44
SDC1-204ENST00000429035 CCL5P13501 91 aa17.8■□□□□ 0.44
SDC1-204ENST00000429035 MAP3K10Q02779 954 aa17.8■□□□□ 0.44
SDC1-204ENST00000429035 HABP4Q5JVS0 413 aaKnown RBP17.8■□□□□ 0.44
SDC1-204ENST00000429035 TREML2Q5T2D2 321 aa17.8■□□□□ 0.44
SDC1-204ENST00000429035 SLAIN1Q8ND83 568 aa17.8■□□□□ 0.44
SDC1-204ENST00000429035 SHISA4Q96DD7 197 aa17.8■□□□□ 0.44
SDC1-204ENST00000429035 TRIM34Q9BYJ4 488 aa17.8■□□□□ 0.44
SDC1-204ENST00000429035 RNF208Q9H0X6 261 aa17.8■□□□□ 0.44
SDC1-204ENST00000429035 PNMA3Q9UL41 463 aa17.8■□□□□ 0.44
SDC1-204ENST00000429035 MYH1P12882 1939 aa17.8■□□□□ 0.44
SDC1-204ENST00000429035 TBC1D12O60347 775 aa17.79■□□□□ 0.44
SDC1-204ENST00000429035 BAG3O95817 575 aa17.79■□□□□ 0.44
SDC1-204ENST00000429035 MAP4K4O95819 1239 aaPredicted RBP17.79■□□□□ 0.44
SDC1-204ENST00000429035 SPP2Q13103 211 aa17.79■□□□□ 0.44
SDC1-204ENST00000429035 POLA2Q14181 598 aa17.79■□□□□ 0.44
SDC1-204ENST00000429035 MAPKAPK5Q8IW41 473 aa17.79■□□□□ 0.44
SDC1-204ENST00000429035 ANKRD13CQ8N6S4 541 aa17.79■□□□□ 0.44
SDC1-204ENST00000429035 SLC45A1Q9Y2W3 748 aa17.79■□□□□ 0.44
SDC1-204ENST00000429035 NPM3O75607 178 aaKnown RBP17.78■□□□□ 0.44
SDC1-204ENST00000429035 HMGCS2P54868 508 aa17.78■□□□□ 0.44
SDC1-204ENST00000429035 CRACR2BQ8N4Y2 399 aaPredicted RBP17.78■□□□□ 0.44
SDC1-204ENST00000429035 ZNF280CQ8ND82 737 aa17.78■□□□□ 0.44
SDC1-204ENST00000429035 TGFBRAP1Q8WUH2 860 aa17.78■□□□□ 0.44
SDC1-204ENST00000429035 FLT1P17948 1338 aa17.77■□□□□ 0.44
SDC1-204ENST00000429035 ADCY3O60266 1144 aa17.77■□□□□ 0.44
SDC1-204ENST00000429035 ELNP15502 786 aa17.77■□□□□ 0.44
SDC1-204ENST00000429035 PLCG2P16885 1265 aa17.77■□□□□ 0.44
SDC1-204ENST00000429035 CAP2P40123 477 aa17.77■□□□□ 0.44
SDC1-204ENST00000429035 ZAP70P43403 619 aa17.77■□□□□ 0.44
SDC1-204ENST00000429035 FLT3LGP49771 235 aa17.77■□□□□ 0.44
SDC1-204ENST00000429035 ATP8B2P98198 1209 aa17.77■□□□□ 0.44
SDC1-204ENST00000429035 NKX2-3Q8TAU0 364 aa17.77■□□□□ 0.44
SDC1-204ENST00000429035 SSH3Q8TE77 659 aa17.77■□□□□ 0.44
SDC1-204ENST00000429035 CCDC8Q9H0W5 538 aaPredicted RBP17.77■□□□□ 0.44
SDC1-204ENST00000429035 AS3MTQ9HBK9 375 aa17.77■□□□□ 0.44
SDC1-204ENST00000429035 GPR108Q9NPR9 543 aa17.77■□□□□ 0.44
SDC1-204ENST00000429035 TLR7Q9NYK1 1049 aaKnown RBP17.77■□□□□ 0.44
SDC1-204ENST00000429035 PCDH10Q9P2E7 1040 aa17.77■□□□□ 0.44
SDC1-204ENST00000429035 HERC5Q9UII4 1024 aaKnown RBP17.77■□□□□ 0.44
SDC1-204ENST00000429035 USP17L5A8MUK1 530 aa17.76■□□□□ 0.43
SDC1-204ENST00000429035 INHAP05111 366 aa17.76■□□□□ 0.43
SDC1-204ENST00000429035 CYP2E1P05181 493 aaPredicted RBP17.76■□□□□ 0.43
SDC1-204ENST00000429035 RLBP1P12271 317 aa17.76■□□□□ 0.43
SDC1-204ENST00000429035 RRP1BQ14684 758 aaKnown RBP17.76■□□□□ 0.43
SDC1-204ENST00000429035 PROCA1Q8NCQ7 364 aaPredicted RBP17.76■□□□□ 0.43
SDC1-204ENST00000429035 DPF3Q92784 378 aa17.76■□□□□ 0.43
SDC1-204ENST00000429035 COA7Q96BR5 231 aa17.76■□□□□ 0.43
SDC1-204ENST00000429035 UNC93B1Q9H1C4 597 aa17.76■□□□□ 0.43
SDC1-204ENST00000429035 SAP30BPQ9UHR5 308 aaKnown RBP17.76■□□□□ 0.43
SDC1-204ENST00000429035 CEP290O15078 2479 aa17.76■□□□□ 0.43
SDC1-204ENST00000429035 NAV1Q8NEY1 1877 aa17.75■□□□□ 0.43
SDC1-204ENST00000429035 IDH1O75874 414 aaKnown RBP17.75■□□□□ 0.43
SDC1-204ENST00000429035 GDF11O95390 407 aa17.75■□□□□ 0.43
SDC1-204ENST00000429035 GJA8P48165 433 aa17.75■□□□□ 0.43
SDC1-204ENST00000429035 PABPC4Q13310 644 aaKnown RBP eCLIP17.75■□□□□ 0.43
SDC1-204ENST00000429035 ADGRA1Q86SQ6 560 aa17.75■□□□□ 0.43
SDC1-204ENST00000429035 TBC1D2Q9BYX2 928 aa17.75■□□□□ 0.43
SDC1-204ENST00000429035 DHX36Q9H2U1 1008 aaKnown RBP17.75■□□□□ 0.43
SDC1-204ENST00000429035 PIH1D3Q9NQM4 214 aaKnown RBP17.75■□□□□ 0.43
SDC1-204ENST00000429035 PI4KBQ9UBF8 816 aa17.75■□□□□ 0.43
SDC1-204ENST00000429035 DBNLQ9UJU6 430 aaKnown RBP17.75■□□□□ 0.43
SDC1-204ENST00000429035 H0YGN5 161 aa17.74■□□□□ 0.43
SDC1-204ENST00000429035 HLA-DOAP06340 250 aa17.74■□□□□ 0.43
SDC1-204ENST00000429035 GJB1P08034 283 aa17.74■□□□□ 0.43
SDC1-204ENST00000429035 CYP7A1P22680 504 aa17.74■□□□□ 0.43
SDC1-204ENST00000429035 DYNLL1P63167 89 aaKnown RBP17.74■□□□□ 0.43
SDC1-204ENST00000429035 IRX3P78415 501 aaPredicted RBP17.74■□□□□ 0.43
SDC1-204ENST00000429035 MTMR2Q13614 643 aa17.74■□□□□ 0.43
SDC1-204ENST00000429035 FAM110CQ1W6H9 321 aa17.74■□□□□ 0.43
SDC1-204ENST00000429035 MIER1Q8N108 512 aa17.74■□□□□ 0.43
SDC1-204ENST00000429035 U2AF1L4Q8WU68 220 aaKnown RBP17.74■□□□□ 0.43
SDC1-204ENST00000429035 BCL11AQ9H165 835 aa17.74■□□□□ 0.43
SDC1-204ENST00000429035 TMOD4Q9NZQ9 345 aa17.74■□□□□ 0.43
SDC1-204ENST00000429035 FARP2O94887 1054 aaPredicted RBP17.73■□□□□ 0.43
SDC1-204ENST00000429035 SHROOM1Q2M3G4 852 aaPredicted RBP17.73■□□□□ 0.43
SDC1-204ENST00000429035 MIGA1Q8NAN2 632 aa17.73■□□□□ 0.43
SDC1-204ENST00000429035 ASCC2Q9H1I8 757 aaPredicted RBP17.73■□□□□ 0.43
SDC1-204ENST00000429035 PALD1Q9ULE6 856 aa17.73■□□□□ 0.43
SDC1-204ENST00000429035 COLQQ9Y215 455 aaPredicted RBP17.73■□□□□ 0.43
SDC1-204ENST00000429035 EXOC6BQ9Y2D4 811 aa17.73■□□□□ 0.43
SDC1-204ENST00000429035 NDUFB9Q9Y6M9 179 aa17.73■□□□□ 0.43
SDC1-204ENST00000429035 ASNSP08243 561 aa17.72■□□□□ 0.43
SDC1-204ENST00000429035 USP5P45974 858 aa17.72■□□□□ 0.43
SDC1-204ENST00000429035 HTATIP2Q9BUP3 242 aa17.72■□□□□ 0.43
SDC1-204ENST00000429035 DNAJC18Q9H819 358 aa17.72■□□□□ 0.43
SDC1-204ENST00000429035 GCLCP48506 637 aaPredicted RBP17.71■□□□□ 0.43
SDC1-204ENST00000429035 IRF5Q13568 498 aa17.71■□□□□ 0.43
SDC1-204ENST00000429035 CEP85Q6P2H3 762 aa17.71■□□□□ 0.43
SDC1-204ENST00000429035 CHRDL2Q6WN34 429 aa17.71■□□□□ 0.43
SDC1-204ENST00000429035 AACSQ86V21 672 aa17.71■□□□□ 0.43
SDC1-204ENST00000429035 MAGEB6Q8N7X4 407 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms