RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 PCMTD1Q96MG8 357 aaPredicted RBP9.89□□□□□ -0.83
USP40-203ENST00000427112 FEZ1Q99689 392 aa9.89□□□□□ -0.83
USP40-203ENST00000427112 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.89□□□□□ -0.83
USP40-203ENST00000427112 PLEKHA8P1O95397 391 aa9.89□□□□□ -0.83
USP40-203ENST00000427112 CMA1P23946 247 aa9.89□□□□□ -0.83
USP40-203ENST00000427112 GTF2E1P29083 439 aaPredicted RBP9.89□□□□□ -0.83
USP40-203ENST00000427112 HNRNPH2P55795 449 aaKnown RBP9.89□□□□□ -0.83
USP40-203ENST00000427112 TCIRG1Q13488 830 aa9.89□□□□□ -0.83
USP40-203ENST00000427112 RASGRF1Q13972 1273 aa9.89□□□□□ -0.83
USP40-203ENST00000427112 RTN1Q16799 776 aa9.89□□□□□ -0.83
USP40-203ENST00000427112 SARM1Q6SZW1 724 aa9.89□□□□□ -0.83
USP40-203ENST00000427112 TTLL11Q8NHH1 800 aa9.89□□□□□ -0.83
USP40-203ENST00000427112 SLF1Q9BQI6 1058 aa9.89□□□□□ -0.83
USP40-203ENST00000427112 UBAC1Q9BSL1 405 aa9.89□□□□□ -0.83
USP40-203ENST00000427112 TRIM34Q9BYJ4 488 aa9.89□□□□□ -0.83
USP40-203ENST00000427112 CTNND2Q9UQB3 1225 aa9.89□□□□□ -0.83
USP40-203ENST00000427112 ERICH2A1L162 156 aa9.89□□□□□ -0.83
USP40-203ENST00000427112 SRGAP2O75044 1071 aa9.89□□□□□ -0.83
USP40-203ENST00000427112 ADAMTS2O95450 1211 aa9.89□□□□□ -0.83
USP40-203ENST00000427112 CYP7A1P22680 504 aa9.89□□□□□ -0.83
USP40-203ENST00000427112 PLA2G4AP47712 749 aa9.89□□□□□ -0.83
USP40-203ENST00000427112 PPP2R3AQ06190 1150 aa9.89□□□□□ -0.83
USP40-203ENST00000427112 FAM182BQ5T319 152 aa9.89□□□□□ -0.83
USP40-203ENST00000427112 IFNL3Q8IZI9 196 aa9.89□□□□□ -0.83
USP40-203ENST00000427112 PIGBQ92521 554 aa9.89□□□□□ -0.83
USP40-203ENST00000427112 CCDC102AQ96A19 550 aa9.89□□□□□ -0.83
USP40-203ENST00000427112 LTN1O94822 1766 aa9.88□□□□□ -0.83
USP40-203ENST00000427112 A0A087X0B3 334 aa9.88□□□□□ -0.83
USP40-203ENST00000427112 PP2D1A8MPX8 630 aa9.88□□□□□ -0.83
USP40-203ENST00000427112 IBSPP21815 317 aaPredicted RBP9.88□□□□□ -0.83
USP40-203ENST00000427112 TOB1P50616 345 aaPredicted RBP9.88□□□□□ -0.83
USP40-203ENST00000427112 RBL2Q08999 1139 aa9.88□□□□□ -0.83
USP40-203ENST00000427112 WTAPQ15007 396 aa9.88□□□□□ -0.83
USP40-203ENST00000427112 POSTNQ15063 836 aa9.88□□□□□ -0.83
USP40-203ENST00000427112 CCDC191Q8NCU4 936 aa9.88□□□□□ -0.83
USP40-203ENST00000427112 CCDC150Q8NCX0 1101 aa9.88□□□□□ -0.83
USP40-203ENST00000427112 RGS22Q8NE09 1264 aa9.88□□□□□ -0.83
USP40-203ENST00000427112 IPO4Q8TEX9 1081 aaKnown RBP9.88□□□□□ -0.83
USP40-203ENST00000427112 TFCP2L1Q9NZI6 479 aa9.88□□□□□ -0.83
USP40-203ENST00000427112 GUCA1BQ9UMX6 200 aa9.88□□□□□ -0.83
USP40-203ENST00000427112 SALL1Q9NSC2 1324 aa9.88□□□□□ -0.83
USP40-203ENST00000427112 DNAJC21Q5F1R6 531 aaKnown RBP9.88□□□□□ -0.83
USP40-203ENST00000427112 C10orf67Q8IYJ2 551 aa9.88□□□□□ -0.83
USP40-203ENST00000427112 KRI1Q8N9T8 703 aaKnown RBP9.88□□□□□ -0.83
USP40-203ENST00000427112 VAT1LQ9HCJ6 419 aa9.88□□□□□ -0.83
USP40-203ENST00000427112 POLR3EQ9NVU0 708 aa9.88□□□□□ -0.83
USP40-203ENST00000427112 HDAC6Q9UBN7 1215 aa9.88□□□□□ -0.83
USP40-203ENST00000427112 SH2B2O14492 632 aaPredicted RBP9.87□□□□□ -0.83
USP40-203ENST00000427112 CASP14P31944 242 aa9.87□□□□□ -0.83
USP40-203ENST00000427112 IRX3P78415 501 aaPredicted RBP9.87□□□□□ -0.83
USP40-203ENST00000427112 SF3A3Q12874 501 aaKnown RBP eCLIP9.87□□□□□ -0.835e-6■■■■■ 39.5
USP40-203ENST00000427112 LRRFIP1Q32MZ4 808 aaKnown RBP9.87□□□□□ -0.83
USP40-203ENST00000427112 TTC19Q6DKK2 380 aaPredicted RBP9.87□□□□□ -0.83
USP40-203ENST00000427112 NCAPH2Q6IBW4 605 aa9.87□□□□□ -0.83
USP40-203ENST00000427112 GPKOWQ92917 476 aaPredicted RBP eCLIP9.87□□□□□ -0.83
USP40-203ENST00000427112 PARD6BQ9BYG5 372 aa9.87□□□□□ -0.83
USP40-203ENST00000427112 VPS18Q9P253 973 aa9.87□□□□□ -0.83
USP40-203ENST00000427112 AKAP2Q9Y2D5 859 aa9.87□□□□□ -0.83
USP40-203ENST00000427112 FHOD1Q9Y613 1164 aa9.87□□□□□ -0.83
USP40-203ENST00000427112 TRIM49BA6NDI0 452 aa9.87□□□□□ -0.83
USP40-203ENST00000427112 CD44P16070 742 aaKnown RBP9.87□□□□□ -0.83
USP40-203ENST00000427112 ADD2P35612 726 aa9.87□□□□□ -0.83
USP40-203ENST00000427112 PPFIBP1Q86W92 1011 aa9.87□□□□□ -0.83
USP40-203ENST00000427112 TRIM22Q8IYM9 498 aa9.87□□□□□ -0.83
USP40-203ENST00000427112 IGSF22Q8N9C0 903 aa9.87□□□□□ -0.83
USP40-203ENST00000427112 NUP88Q99567 741 aaPredicted RBP9.87□□□□□ -0.83
USP40-203ENST00000427112 TEX13AQ9BXU3 409 aaPredicted RBP9.87□□□□□ -0.83
USP40-203ENST00000427112 C19orf44Q9H6X5 657 aa9.87□□□□□ -0.83
USP40-203ENST00000427112 YEATS4O95619 227 aa9.87□□□□□ -0.83
USP40-203ENST00000427112 BMS1Q14692 1282 aaKnown RBP9.87□□□□□ -0.83
USP40-203ENST00000427112 PIK3AP1Q6ZUJ8 805 aa9.87□□□□□ -0.83
USP40-203ENST00000427112 ADGRA1Q86SQ6 560 aa9.87□□□□□ -0.83
USP40-203ENST00000427112 REXO1L1PQ8IX06 675 aa9.87□□□□□ -0.83
USP40-203ENST00000427112 GPR101Q96P66 508 aaPredicted RBP9.87□□□□□ -0.83
USP40-203ENST00000427112 LY9Q9HBG7 655 aa9.87□□□□□ -0.83
USP40-203ENST00000427112 FAM217BQ9NTX9 383 aaPredicted RBP9.87□□□□□ -0.83
USP40-203ENST00000427112 TUBGCP6Q96RT7 1819 aa9.87□□□□□ -0.83
USP40-203ENST00000427112 TRIM66O15016 1216 aa9.86□□□□□ -0.83
USP40-203ENST00000427112 NEMFO60524 1076 aa9.86□□□□□ -0.83
USP40-203ENST00000427112 CYP2D6P10635 497 aa9.86□□□□□ -0.83
USP40-203ENST00000427112 ATP2B2Q01814 1243 aa9.86□□□□□ -0.83
USP40-203ENST00000427112 RRAGBQ5VZM2 374 aa9.86□□□□□ -0.83
USP40-203ENST00000427112 TRIM65Q6PJ69 517 aa9.86□□□□□ -0.83
USP40-203ENST00000427112 NOSTRINQ8IVI9 506 aa9.86□□□□□ -0.83
USP40-203ENST00000427112 JMYQ8N9B5 988 aa9.86□□□□□ -0.83
USP40-203ENST00000427112 HPS3Q969F9 1004 aa9.86□□□□□ -0.83
USP40-203ENST00000427112 MED15Q96RN5 788 aa9.86□□□□□ -0.83
USP40-203ENST00000427112 MORC2Q9Y6X9 1032 aaPredicted RBP9.86□□□□□ -0.83
USP40-203ENST00000427112 HEG1Q9ULI3 1381 aa9.86□□□□□ -0.83
USP40-203ENST00000427112 ANKARQ7Z5J8 1434 aa9.86□□□□□ -0.83
USP40-203ENST00000427112 RNF225M0QZC1 329 aaPredicted RBP9.86□□□□□ -0.83
USP40-203ENST00000427112 N4BP3O15049 544 aa9.86□□□□□ -0.83
USP40-203ENST00000427112 CDC25BP30305 580 aa9.86□□□□□ -0.83
USP40-203ENST00000427112 BRAPQ7Z569 592 aa9.86□□□□□ -0.83
USP40-203ENST00000427112 DZIP3Q86Y13 1208 aaKnown RBP9.86□□□□□ -0.83
USP40-203ENST00000427112 PARP3Q9Y6F1 533 aa9.86□□□□□ -0.83
USP40-203ENST00000427112 FER1L4A9Z1Z3 1794 aa9.86□□□□□ -0.83
USP40-203ENST00000427112 NUTM2BA6NNL0 878 aaPredicted RBP9.86□□□□□ -0.83
USP40-203ENST00000427112 NUTM2EB1AL46 878 aaPredicted RBP9.86□□□□□ -0.83
USP40-203ENST00000427112 RNASE9P60153 205 aaKnown RBP9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms