RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 ZNF124Q15973 351 aa9.44□□□□□ -0.9
LINC01040-201ENST00000425048 SCARA3Q6AZY7 606 aa9.44□□□□□ -0.9
LINC01040-201ENST00000425048 DBX1A6NMT0 343 aa9.43□□□□□ -0.9
LINC01040-201ENST00000425048 PAGE1O75459 146 aa9.43□□□□□ -0.9
LINC01040-201ENST00000425048 NTF4P34130 210 aa9.43□□□□□ -0.9
LINC01040-201ENST00000425048 IKZF1Q13422 519 aa9.43□□□□□ -0.9
LINC01040-201ENST00000425048 PKN1Q16512 942 aa9.43□□□□□ -0.9
LINC01040-201ENST00000425048 LLGL2Q6P1M3 1020 aa9.43□□□□□ -0.9
LINC01040-201ENST00000425048 KSR1Q8IVT5 923 aa9.43□□□□□ -0.9
LINC01040-201ENST00000425048 PCDHA4Q9UN74 947 aa9.43□□□□□ -0.9
LINC01040-201ENST00000425048 CYP8B1Q9UNU6 501 aa9.43□□□□□ -0.9
LINC01040-201ENST00000425048 GNAT3A8MTJ3 354 aa9.42□□□□□ -0.9
LINC01040-201ENST00000425048 BRD1O95696 1058 aa9.42□□□□□ -0.9
LINC01040-201ENST00000425048 MAPK8P45983 427 aa9.42□□□□□ -0.9
LINC01040-201ENST00000425048 ZP2Q05996 745 aa9.42□□□□□ -0.9
LINC01040-201ENST00000425048 NKPD1Q17RQ9 610 aa9.42□□□□□ -0.9
LINC01040-201ENST00000425048 ZBTB37Q5TC79 503 aa9.42□□□□□ -0.9
LINC01040-201ENST00000425048 SPACA3Q8IXA5 215 aa9.42□□□□□ -0.9
LINC01040-201ENST00000425048 FLAD1Q8NFF5 587 aa9.42□□□□□ -0.9
LINC01040-201ENST00000425048 PRDM7Q9NQW5 492 aa9.42□□□□□ -0.9
LINC01040-201ENST00000425048 ZSCAN29Q8IWY8 852 aaPredicted RBP9.41□□□□□ -0.9
LINC01040-201ENST00000425048 ZNF507Q8TCN5 953 aa9.41□□□□□ -0.9
LINC01040-201ENST00000425048 ANKRD24Q8TF21 1146 aa9.41□□□□□ -0.9
LINC01040-201ENST00000425048 SLC38A3Q99624 504 aa9.41□□□□□ -0.9
LINC01040-201ENST00000425048 OSBPL7Q9BZF2 842 aa9.41□□□□□ -0.9
LINC01040-201ENST00000425048 FAM53CQ9NYF3 392 aa9.41□□□□□ -0.9
LINC01040-201ENST00000425048 FBXO24O75426 580 aa9.4□□□□□ -0.9
LINC01040-201ENST00000425048 EOMESO95936 686 aa9.4□□□□□ -0.9
LINC01040-201ENST00000425048 ALG1LQ6GMV1 187 aa9.4□□□□□ -0.9
LINC01040-201ENST00000425048 UBE3DQ7Z6J8 389 aa9.4□□□□□ -0.9
LINC01040-201ENST00000425048 ELMO3Q96BJ8 720 aa9.4□□□□□ -0.9
LINC01040-201ENST00000425048 PRDM5Q9NQX1 630 aaPredicted RBP9.4□□□□□ -0.9
LINC01040-201ENST00000425048 SUPT5HO00267 1087 aaKnown RBP9.39□□□□□ -0.91
LINC01040-201ENST00000425048 CLCN7P51798 805 aa9.39□□□□□ -0.91
LINC01040-201ENST00000425048 ZSWIM9Q86XI8 627 aa9.39□□□□□ -0.91
LINC01040-201ENST00000425048 LMCD1Q9NZU5 365 aa9.39□□□□□ -0.91
LINC01040-201ENST00000425048 LRIG2O94898 1065 aa9.38□□□□□ -0.91
LINC01040-201ENST00000425048 ERICH6Q7L0X2 663 aa9.38□□□□□ -0.91
LINC01040-201ENST00000425048 ARMCX6Q7L4S7 300 aa9.38□□□□□ -0.91
LINC01040-201ENST00000425048 FAM84AQ96KN4 292 aa9.38□□□□□ -0.91
LINC01040-201ENST00000425048 FOXQ1Q9C009 403 aa9.38□□□□□ -0.91
LINC01040-201ENST00000425048 MAPK8IP1Q9UQF2 711 aa9.38□□□□□ -0.91
LINC01040-201ENST00000425048 LRRC10BA6NIK2 292 aa9.37□□□□□ -0.91
LINC01040-201ENST00000425048 AFMP43652 599 aa9.37□□□□□ -0.91
LINC01040-201ENST00000425048 KCNMB1Q16558 191 aa9.37□□□□□ -0.91
LINC01040-201ENST00000425048 RASIP1Q5U651 963 aa9.37□□□□□ -0.91
LINC01040-201ENST00000425048 SPG7Q9UQ90 795 aa9.37□□□□□ -0.91
LINC01040-201ENST00000425048 PITPNM2Q9BZ72 1349 aa9.36□□□□□ -0.91
LINC01040-201ENST00000425048 ATP2B2Q01814 1243 aa9.36□□□□□ -0.91
LINC01040-201ENST00000425048 FMR1Q06787 632 aaKnown RBP eCLIP9.36□□□□□ -0.91
LINC01040-201ENST00000425048 CTNND2Q9UQB3 1225 aa9.36□□□□□ -0.91
LINC01040-201ENST00000425048 MESP2Q0VG99 397 aa9.35□□□□□ -0.91
LINC01040-201ENST00000425048 INPP5AQ14642 412 aa9.35□□□□□ -0.91
LINC01040-201ENST00000425048 PCNX4Q63HM2 1172 aa9.35□□□□□ -0.91
LINC01040-201ENST00000425048 HDXQ7Z353 690 aa9.35□□□□□ -0.91
LINC01040-201ENST00000425048 SETDB2Q96T68 719 aa9.35□□□□□ -0.91
LINC01040-201ENST00000425048 FAM8A1Q9UBU6 413 aa9.35□□□□□ -0.91
LINC01040-201ENST00000425048 WWC3Q9ULE0 1092 aa9.35□□□□□ -0.91
LINC01040-201ENST00000425048 ZNF503-AS2A6NEH8 195 aa9.34□□□□□ -0.91
LINC01040-201ENST00000425048 FAM155AB1AL88 458 aaPredicted RBP9.34□□□□□ -0.91
LINC01040-201ENST00000425048 SLITRK5O94991 958 aa9.34□□□□□ -0.91
LINC01040-201ENST00000425048 CYFIP1Q7L576 1253 aa9.34□□□□□ -0.91
LINC01040-201ENST00000425048 BHLHE22Q8NFJ8 381 aaPredicted RBP9.34□□□□□ -0.91
LINC01040-201ENST00000425048 ASB16Q96NS5 453 aa9.34□□□□□ -0.91
LINC01040-201ENST00000425048 KRTAP4-7Q9BYR0 210 aa9.34□□□□□ -0.91
LINC01040-201ENST00000425048 C12orf49Q9H741 205 aa9.34□□□□□ -0.91
LINC01040-201ENST00000425048 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.34□□□□□ -0.91
LINC01040-201ENST00000425048 TPX2Q9ULW0 747 aaKnown RBP9.34□□□□□ -0.91
LINC01040-201ENST00000425048 PRAMEF27A3QJZ7 478 aa9.33□□□□□ -0.92
LINC01040-201ENST00000425048 CELA3AP09093 270 aa9.33□□□□□ -0.92
LINC01040-201ENST00000425048 MLANAQ16655 118 aa9.33□□□□□ -0.92
LINC01040-201ENST00000425048 SFRP5Q5T4F7 317 aa9.33□□□□□ -0.92
LINC01040-201ENST00000425048 LRFN4Q6PJG9 635 aa9.33□□□□□ -0.92
LINC01040-201ENST00000425048 MFSD2AQ8NA29 543 aa9.33□□□□□ -0.92
LINC01040-201ENST00000425048 HSPA12BQ96MM6 686 aa9.33□□□□□ -0.92
LINC01040-201ENST00000425048 WNT10AQ9GZT5 417 aa9.33□□□□□ -0.92
LINC01040-201ENST00000425048 PTPN11Q06124 597 aaPredicted RBP9.32□□□□□ -0.92
LINC01040-201ENST00000425048 SLBPQ14493 270 aaKnown RBP eCLIP9.32□□□□□ -0.92
LINC01040-201ENST00000425048 SV2BQ7L1I2 683 aa9.32□□□□□ -0.92
LINC01040-201ENST00000425048 NPAS4Q8IUM7 802 aa9.32□□□□□ -0.92
LINC01040-201ENST00000425048 PLPPR2Q96GM1 343 aa9.32□□□□□ -0.92
LINC01040-201ENST00000425048 CARS2Q9HA77 564 aaKnown RBP9.32□□□□□ -0.92
LINC01040-201ENST00000425048 SNCAIPQ9Y6H5 919 aa9.32□□□□□ -0.92
LINC01040-201ENST00000425048 CAP2P40123 477 aa9.31□□□□□ -0.92
LINC01040-201ENST00000425048 FYB2Q5VWT5 728 aa9.31□□□□□ -0.92
LINC01040-201ENST00000425048 C22orf34Q6ZV56 151 aa9.31□□□□□ -0.92
LINC01040-201ENST00000425048 FBRSQ9HAH7 460 aa9.31□□□□□ -0.92
LINC01040-201ENST00000425048 SEMA3GQ9NS98 782 aa9.31□□□□□ -0.92
LINC01040-201ENST00000425048 USP17L7P0C7H9 530 aa9.3□□□□□ -0.92
LINC01040-201ENST00000425048 ZNF865P0CJ78 1059 aaPredicted RBP9.3□□□□□ -0.92
LINC01040-201ENST00000425048 ETF1P62495 437 aaKnown RBP9.3□□□□□ -0.92
LINC01040-201ENST00000425048 FBLN7Q53RD9 439 aa9.3□□□□□ -0.92
LINC01040-201ENST00000425048 CDKAL1Q5VV42 579 aa9.3□□□□□ -0.92
LINC01040-201ENST00000425048 HID1Q8IV36 788 aa9.3□□□□□ -0.92
LINC01040-201ENST00000425048 MFSD4AQ8N468 514 aa9.3□□□□□ -0.92
LINC01040-201ENST00000425048 LIN37Q96GY3 246 aaPredicted RBP9.3□□□□□ -0.92
LINC01040-201ENST00000425048 FRMD6Q96NE9 622 aa9.3□□□□□ -0.92
LINC01040-201ENST00000425048 MIPEPQ99797 713 aa9.3□□□□□ -0.92
LINC01040-201ENST00000425048 ATP13A1Q9HD20 1204 aa9.3□□□□□ -0.92
LINC01040-201ENST00000425048 CNTNAP4Q9C0A0 1308 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms