RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 POTEDQ86YR6 584 aa11.16□□□□□ -0.62
USP54-205ENST00000424265 CRAMP1Q96RY5 1269 aa11.16□□□□□ -0.62
USP54-205ENST00000424265 DBNDD2Q9BQY9 259 aa11.16□□□□□ -0.62
USP54-205ENST00000424265 ESYT1Q9BSJ8 1104 aa11.16□□□□□ -0.62
USP54-205ENST00000424265 GCFC2P16383 781 aaKnown RBP11.15□□□□□ -0.62
USP54-205ENST00000424265 PTPN12Q05209 780 aaKnown RBP11.15□□□□□ -0.62
USP54-205ENST00000424265 MTA1Q13330 715 aa11.15□□□□□ -0.62
USP54-205ENST00000424265 MSL1Q68DK7 614 aa11.15□□□□□ -0.62
USP54-205ENST00000424265 CTCFLQ8NI51 663 aaPredicted RBP11.15□□□□□ -0.62
USP54-205ENST00000424265 SNRKQ9NRH2 765 aa11.15□□□□□ -0.62
USP54-205ENST00000424265 PAX7P23759 505 aa11.15□□□□□ -0.62
USP54-205ENST00000424265 CCDC93Q567U6 631 aa11.15□□□□□ -0.62
USP54-205ENST00000424265 HELBQ8NG08 1087 aaPredicted RBP11.15□□□□□ -0.62
USP54-205ENST00000424265 ZNF804BA4D1E1 1349 aa11.15□□□□□ -0.62
USP54-205ENST00000424265 NIM1KQ8IY84 436 aa11.15□□□□□ -0.62
USP54-205ENST00000424265 CLIP2Q9UDT6 1046 aa11.15□□□□□ -0.62
USP54-205ENST00000424265 ODF2LQ9ULJ1 636 aa11.15□□□□□ -0.62
USP54-205ENST00000424265 CCDC69A6NI79 296 aa11.15□□□□□ -0.63
USP54-205ENST00000424265 EIF6P56537 245 aaKnown RBP11.15□□□□□ -0.63
USP54-205ENST00000424265 KCNQ4P56696 695 aa11.15□□□□□ -0.63
USP54-205ENST00000424265 ZSCAN29Q8IWY8 852 aaPredicted RBP11.15□□□□□ -0.63
USP54-205ENST00000424265 MAGEB6P1A0A0J9YX57 407 aa11.14□□□□□ -0.63
USP54-205ENST00000424265 CCDC189A1A4V9 331 aa11.14□□□□□ -0.63
USP54-205ENST00000424265 IQCA1Q86XH1 822 aa11.14□□□□□ -0.63
USP54-205ENST00000424265 SPATA5Q8NB90 893 aa11.14□□□□□ -0.63
USP54-205ENST00000424265 APPBP2Q92624 585 aa11.14□□□□□ -0.63
USP54-205ENST00000424265 CCDC102AQ96A19 550 aa11.14□□□□□ -0.63
USP54-205ENST00000424265 HOOK2Q96ED9 719 aa11.14□□□□□ -0.63
USP54-205ENST00000424265 RMI1Q9H9A7 625 aa11.14□□□□□ -0.63
USP54-205ENST00000424265 SH2B1Q9NRF2 756 aaPredicted RBP11.14□□□□□ -0.63
USP54-205ENST00000424265 TMTC2Q8N394 836 aa11.14□□□□□ -0.63
USP54-205ENST00000424265 GPT2Q8TD30 523 aa11.14□□□□□ -0.63
USP54-205ENST00000424265 SHTN1A0MZ66 631 aa11.14□□□□□ -0.63
USP54-205ENST00000424265 KINO60870 393 aaKnown RBP11.14□□□□□ -0.63
USP54-205ENST00000424265 CCDC192P0DO97 292 aa11.14□□□□□ -0.63
USP54-205ENST00000424265 TIMM10P62072 90 aa11.14□□□□□ -0.63
USP54-205ENST00000424265 SLC10A5Q5PT55 438 aa11.14□□□□□ -0.63
USP54-205ENST00000424265 CRACR2BQ8N4Y2 399 aaPredicted RBP11.14□□□□□ -0.63
USP54-205ENST00000424265 KRT23Q9C075 422 aa11.14□□□□□ -0.63
USP54-205ENST00000424265 ARFGAP3Q9NP61 516 aa11.14□□□□□ -0.63
USP54-205ENST00000424265 ADCY2Q08462 1091 aa11.14□□□□□ -0.63
USP54-205ENST00000424265 LARGE2Q8N3Y3 721 aa11.14□□□□□ -0.63
USP54-205ENST00000424265 TTLL6Q8N841 843 aa11.14□□□□□ -0.63
USP54-205ENST00000424265 CSF1RP07333 972 aa11.13□□□□□ -0.63
USP54-205ENST00000424265 CEP57Q86XR8 500 aa11.13□□□□□ -0.63
USP54-205ENST00000424265 JAKMIP1Q96N16 626 aaKnown RBP11.13□□□□□ -0.63
USP54-205ENST00000424265 HAUS7Q99871 368 aa11.13□□□□□ -0.63
USP54-205ENST00000424265 TNNI2P48788 182 aa11.13□□□□□ -0.63
USP54-205ENST00000424265 NT5C2P49902 561 aa11.13□□□□□ -0.63
USP54-205ENST00000424265 KLHDC4Q8TBB5 520 aa11.13□□□□□ -0.63
USP54-205ENST00000424265 MIEF2Q96C03 454 aa11.13□□□□□ -0.63
USP54-205ENST00000424265 KIF2CQ99661 725 aa11.13□□□□□ -0.63
USP54-205ENST00000424265 FRMD3A2A2Y4 597 aa11.13□□□□□ -0.63
USP54-205ENST00000424265 NTSR2O95665 410 aa11.13□□□□□ -0.63
USP54-205ENST00000424265 LIG3P49916 1009 aa11.13□□□□□ -0.63
USP54-205ENST00000424265 NOL8Q76FK4 1167 aaKnown RBP11.13□□□□□ -0.63
USP54-205ENST00000424265 TRIM22Q8IYM9 498 aa11.13□□□□□ -0.63
USP54-205ENST00000424265 WASF1Q92558 559 aa11.13□□□□□ -0.63
USP54-205ENST00000424265 MKNK2Q9HBH9 465 aa11.13□□□□□ -0.63
USP54-205ENST00000424265 MRFAP1Q9Y605 127 aa11.13□□□□□ -0.63
USP54-205ENST00000424265 RRP12Q5JTH9 1297 aaKnown RBP11.13□□□□□ -0.63
USP54-205ENST00000424265 ZNF444Q8N0Y2 327 aaPredicted RBP11.13□□□□□ -0.63
USP54-205ENST00000424265 RSRC1Q96IZ7 334 aaKnown RBP11.13□□□□□ -0.63
USP54-205ENST00000424265 KDM4CQ9H3R0 1056 aa11.13□□□□□ -0.63
USP54-205ENST00000424265 CHMLP26374 656 aa11.12□□□□□ -0.63
USP54-205ENST00000424265 RFX7Q2KHR2 1363 aa11.12□□□□□ -0.63
USP54-205ENST00000424265 ATP8B1O43520 1251 aa11.12□□□□□ -0.63
USP54-205ENST00000424265 LMOD1P29536 600 aaPredicted RBP11.12□□□□□ -0.63
USP54-205ENST00000424265 DALRD3Q5D0E6 543 aaKnown RBP11.12□□□□□ -0.63
USP54-205ENST00000424265 PIM2Q9P1W9 311 aa11.12□□□□□ -0.63
USP54-205ENST00000424265 ERLIN1O75477 346 aa11.12□□□□□ -0.63
USP54-205ENST00000424265 CLCN6P51797 869 aa11.12□□□□□ -0.63
USP54-205ENST00000424265 NCOA7Q8NI08 942 aa11.12□□□□□ -0.63
USP54-205ENST00000424265 EAF2Q96CJ1 260 aaPredicted RBP11.12□□□□□ -0.63
USP54-205ENST00000424265 SPON1Q9HCB6 807 aa11.12□□□□□ -0.63
USP54-205ENST00000424265 TRMT1Q9NXH9 659 aaKnown RBP11.12□□□□□ -0.63
USP54-205ENST00000424265 NEMFO60524 1076 aa11.12□□□□□ -0.63
USP54-205ENST00000424265 CCT2P78371 535 aaKnown RBP11.12□□□□□ -0.63
USP54-205ENST00000424265 FOXO4P98177 505 aa11.12□□□□□ -0.63
USP54-205ENST00000424265 DHX8Q14562 1220 aaKnown RBP11.12□□□□□ -0.63
USP54-205ENST00000424265 STYK1Q6J9G0 422 aa11.12□□□□□ -0.63
USP54-205ENST00000424265 PRPF40BQ6NWY9 871 aaKnown RBP11.12□□□□□ -0.63
USP54-205ENST00000424265 INPP5BP32019 993 aa11.12□□□□□ -0.63
USP54-205ENST00000424265 CORO7P57737 925 aa11.12□□□□□ -0.63
USP54-205ENST00000424265 LRRC24Q50LG9 513 aa11.12□□□□□ -0.63
USP54-205ENST00000424265 C16orf71Q8IYS4 520 aaPredicted RBP11.12□□□□□ -0.63
USP54-205ENST00000424265 PPIP5K2O43314 1243 aa11.11□□□□□ -0.63
USP54-205ENST00000424265 CCDC96Q2M329 555 aa11.11□□□□□ -0.63
USP54-205ENST00000424265 CCDC102BQ68D86 513 aa11.11□□□□□ -0.63
USP54-205ENST00000424265 SP8Q8IXZ3 490 aa11.11□□□□□ -0.63
USP54-205ENST00000424265 MIPOL1Q8TD10 442 aa11.11□□□□□ -0.63
USP54-205ENST00000424265 EBAG9O00559 213 aa11.11□□□□□ -0.63
USP54-205ENST00000424265 SNUPNO95149 360 aaKnown RBP11.11□□□□□ -0.63
USP54-205ENST00000424265 NMIQ13287 307 aaPredicted RBP11.11□□□□□ -0.63
USP54-205ENST00000424265 MFSD6Q6ZSS7 791 aa11.11□□□□□ -0.63
USP54-205ENST00000424265 COA1Q9GZY4 146 aa11.11□□□□□ -0.63
USP54-205ENST00000424265 SLC4A4Q9Y6R1 1079 aa11.11□□□□□ -0.63
USP54-205ENST00000424265 TAF5LO75529 589 aa11.11□□□□□ -0.63
USP54-205ENST00000424265 EZH2Q15910 746 aaKnown RBP11.11□□□□□ -0.63
USP54-205ENST00000424265 TTC6Q86TZ1 520 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms