RNA–Protein interactions for RNA: ENST00000417448.1

VCP-202, Transcript of valosin containing protein, humanhuman

TSL 3

Gene VCP, Length 722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-202ENST00000417448 ITPRIPQ8IWB1 547 aa22.26■■□□□ 1.15
VCP-202ENST00000417448 WDR66Q8TBY9 1149 aa22.26■■□□□ 1.15
VCP-202ENST00000417448 UBE2OQ9C0C9 1292 aaKnown RBP22.26■■□□□ 1.15
VCP-202ENST00000417448 C11orf49Q9H6J7 331 aa22.26■■□□□ 1.15
VCP-202ENST00000417448 RFX7Q2KHR2 1363 aa22.25■■□□□ 1.15
VCP-202ENST00000417448 TRIM75PA6NK02 468 aa22.25■■□□□ 1.15
VCP-202ENST00000417448 PUM3Q15397 648 aaKnown RBP22.25■■□□□ 1.15
VCP-202ENST00000417448 FAM110CQ1W6H9 321 aa22.25■■□□□ 1.15
VCP-202ENST00000417448 AGTPBP1Q9UPW5 1226 aa22.25■■□□□ 1.15
VCP-202ENST00000417448 PFASO15067 1338 aa22.25■■□□□ 1.15
VCP-202ENST00000417448 CDH23Q9H251 3354 aa22.24■■□□□ 1.15
VCP-202ENST00000417448 IFIT1P09914 478 aaKnown RBP22.24■■□□□ 1.15
VCP-202ENST00000417448 RGS3P49796 1198 aa22.24■■□□□ 1.15
VCP-202ENST00000417448 MAP3K10Q02779 954 aa22.24■■□□□ 1.15
VCP-202ENST00000417448 GUCD1Q96NT3 240 aa22.24■■□□□ 1.15
VCP-202ENST00000417448 C1orf115Q9H7X2 142 aa22.24■■□□□ 1.15
VCP-202ENST00000417448 GJD2Q9UKL4 321 aa22.24■■□□□ 1.15
VCP-202ENST00000417448 RPTORQ8N122 1335 aa22.24■■□□□ 1.15
VCP-202ENST00000417448 COL2A1P02458 1487 aaPredicted RBP22.23■■□□□ 1.15
VCP-202ENST00000417448 ATAD5Q96QE3 1844 aa22.23■■□□□ 1.15
VCP-202ENST00000417448 HMX1Q9NP08 348 aaPredicted RBP22.23■■□□□ 1.15
VCP-202ENST00000417448 OGDHLQ9ULD0 1010 aa22.23■■□□□ 1.15
VCP-202ENST00000417448 COG6Q9Y2V7 657 aa22.23■■□□□ 1.15
VCP-202ENST00000417448 DDTLA6NHG4 134 aaPredicted RBP22.21■■□□□ 1.15
VCP-202ENST00000417448 GNAI3P08754 354 aa22.21■■□□□ 1.15
VCP-202ENST00000417448 IDI2Q9BXS1 227 aa22.21■■□□□ 1.15
VCP-202ENST00000417448 CTNND1O60716 968 aaKnown RBP22.2■■□□□ 1.14
VCP-202ENST00000417448 ENTPD3O75355 529 aa22.2■■□□□ 1.14
VCP-202ENST00000417448 TRIB2Q92519 343 aa22.2■■□□□ 1.14
VCP-202ENST00000417448 FRMPD3Q5JV73 1810 aa22.2■■□□□ 1.14
VCP-202ENST00000417448 POTEB2H3BUK9 544 aa22.19■■□□□ 1.14
VCP-202ENST00000417448 LDHBP07195 334 aaKnown RBP22.19■■□□□ 1.14
VCP-202ENST00000417448 LPIN2Q92539 896 aa22.19■■□□□ 1.14
VCP-202ENST00000417448 DDX4Q9NQI0 724 aaKnown RBP22.19■■□□□ 1.14
VCP-202ENST00000417448 COL6A1P12109 1028 aa22.18■■□□□ 1.14
VCP-202ENST00000417448 SLC5A1P13866 664 aa22.18■■□□□ 1.14
VCP-202ENST00000417448 RFX5P48382 616 aaPredicted RBP22.18■■□□□ 1.14
VCP-202ENST00000417448 MAP3K21Q5TCX8 1036 aa22.18■■□□□ 1.14
VCP-202ENST00000417448 PNMA3Q9UL41 463 aa22.18■■□□□ 1.14
VCP-202ENST00000417448 MUC3AQ02505 3323 aa22.18■■□□□ 1.14
VCP-202ENST00000417448 MAST2Q6P0Q8 1798 aa22.17■■□□□ 1.14
VCP-202ENST00000417448 GAKO14976 1311 aa22.17■■□□□ 1.14
VCP-202ENST00000417448 SALL1Q9NSC2 1324 aa22.17■■□□□ 1.14
VCP-202ENST00000417448 GNAI2P04899 355 aa22.17■■□□□ 1.14
VCP-202ENST00000417448 MDM2Q00987 491 aaPredicted RBP22.17■■□□□ 1.14
VCP-202ENST00000417448 ZSCAN29Q8IWY8 852 aaPredicted RBP22.17■■□□□ 1.14
VCP-202ENST00000417448 FAM161BQ96MY7 647 aa22.17■■□□□ 1.14
VCP-202ENST00000417448 PA2G4Q9UQ80 394 aaKnown RBP22.17■■□□□ 1.14
VCP-202ENST00000417448 LRRC26Q2I0M4 334 aa22.16■■□□□ 1.14
VCP-202ENST00000417448 PROCA1Q8NCQ7 364 aaPredicted RBP22.16■■□□□ 1.14
VCP-202ENST00000417448 SIL1Q9H173 461 aa22.16■■□□□ 1.14
VCP-202ENST00000417448 FAM196BA6NMK8 535 aa22.15■■□□□ 1.14
VCP-202ENST00000417448 EYA2O00167 538 aa22.15■■□□□ 1.14
VCP-202ENST00000417448 PRKAR2AP13861 404 aaKnown RBP22.15■■□□□ 1.14
VCP-202ENST00000417448 GCLCP48506 637 aaPredicted RBP22.15■■□□□ 1.14
VCP-202ENST00000417448 MVPQ14764 893 aaKnown RBP22.15■■□□□ 1.14
VCP-202ENST00000417448 FAM109BQ6ICB4 259 aaPredicted RBP22.15■■□□□ 1.14
VCP-202ENST00000417448 ATG9AQ7Z3C6 839 aa22.15■■□□□ 1.14
VCP-202ENST00000417448 TTC28Q96AY4 2481 aa22.15■■□□□ 1.14
VCP-202ENST00000417448 PNMA6EA0A0J9YXQ4 647 aa22.14■■□□□ 1.13
VCP-202ENST00000417448 MS4A1P11836 297 aa22.14■■□□□ 1.13
VCP-202ENST00000417448 CYP2B6P20813 491 aa22.14■■□□□ 1.13
VCP-202ENST00000417448 RRP1P56182 461 aaKnown RBP22.14■■□□□ 1.13
VCP-202ENST00000417448 SPP2Q13103 211 aa22.14■■□□□ 1.13
VCP-202ENST00000417448 PICALMQ13492 652 aa22.14■■□□□ 1.13
VCP-202ENST00000417448 ASCC2Q9H1I8 757 aaPredicted RBP22.14■■□□□ 1.13
VCP-202ENST00000417448 SRGAP3O43295 1099 aa22.13■■□□□ 1.13
VCP-202ENST00000417448 PEX10O60683 326 aa22.13■■□□□ 1.13
VCP-202ENST00000417448 HMGCS2P54868 508 aa22.13■■□□□ 1.13
VCP-202ENST00000417448 LTBP2Q14767 1821 aa22.13■■□□□ 1.13
VCP-202ENST00000417448 PHKA1P46020 1223 aa22.12■■□□□ 1.13
VCP-202ENST00000417448 MORF4L1Q9UBU8 362 aa22.12■■□□□ 1.13
VCP-202ENST00000417448 HDAC5Q9UQL6 1122 aa22.12■■□□□ 1.13
VCP-202ENST00000417448 RRP1BQ14684 758 aaKnown RBP22.11■■□□□ 1.13
VCP-202ENST00000417448 LHX8Q68G74 356 aa22.11■■□□□ 1.13
VCP-202ENST00000417448 ZNF280CQ8ND82 737 aa22.11■■□□□ 1.13
VCP-202ENST00000417448 TBC1D12O60347 775 aa22.1■■□□□ 1.13
VCP-202ENST00000417448 CACNB2Q08289 660 aaPredicted RBP22.1■■□□□ 1.13
VCP-202ENST00000417448 PDE3AQ14432 1141 aa22.1■■□□□ 1.13
VCP-202ENST00000417448 ATP2B3Q16720 1220 aa22.1■■□□□ 1.13
VCP-202ENST00000417448 DENND2AQ9ULE3 1009 aa22.1■■□□□ 1.13
VCP-202ENST00000417448 SIPA1L1O43166 1804 aa22.1■■□□□ 1.13
VCP-202ENST00000417448 CCND3P30281 292 aaPredicted RBP22.09■■□□□ 1.13
VCP-202ENST00000417448 BTDP43251 543 aa22.09■■□□□ 1.13
VCP-202ENST00000417448 TXNRD2Q9NNW7 524 aa22.09■■□□□ 1.13
VCP-202ENST00000417448 PRDM6Q9NQX0 595 aa22.09■■□□□ 1.13
VCP-202ENST00000417448 GNL3LQ9NVN8 582 aaKnown RBP22.09■■□□□ 1.13
VCP-202ENST00000417448 SEMA3EO15041 775 aa22.08■■□□□ 1.13
VCP-202ENST00000417448 ATP8B2P98198 1209 aa22.08■■□□□ 1.13
VCP-202ENST00000417448 PABPC4Q13310 644 aaKnown RBP eCLIP22.08■■□□□ 1.13
VCP-202ENST00000417448 SH3D19Q5HYK7 790 aa22.08■■□□□ 1.13
VCP-202ENST00000417448 OSBPL5Q9H0X9 879 aaPredicted RBP22.08■■□□□ 1.13
VCP-202ENST00000417448 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.08■■□□□ 1.13
VCP-202ENST00000417448 DDX19BQ9UMR2 479 aa22.08■■□□□ 1.13
VCP-202ENST00000417448 SUPT16HQ9Y5B9 1047 aaKnown RBP22.08■■□□□ 1.13
VCP-202ENST00000417448 XRCC5P13010 732 aaKnown RBP22.07■■□□□ 1.12
VCP-202ENST00000417448 ADORA1P30542 326 aa22.07■■□□□ 1.12
VCP-202ENST00000417448 RHBDL3P58872 404 aa22.07■■□□□ 1.12
VCP-202ENST00000417448 MTX1Q13505 466 aa22.07■■□□□ 1.12
VCP-202ENST00000417448 CCL14Q16627 93 aa22.07■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms