RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 SH3RF3Q8TEJ3 882 aaPredicted RBP18.22■□□□□ 0.51
RPS28-201ENST00000417088 SMCR8Q8TEV9 937 aaPredicted RBP18.22■□□□□ 0.51
RPS28-201ENST00000417088 DBNDD2Q9BQY9 259 aa18.22■□□□□ 0.51
RPS28-201ENST00000417088 BIN2Q9UBW5 565 aaPredicted RBP18.22■□□□□ 0.51
RPS28-201ENST00000417088 FPGT-TNNI3KV9GXZ4 949 aa18.22■□□□□ 0.51
RPS28-201ENST00000417088 CAP2P40123 477 aa18.21■□□□□ 0.51
RPS28-201ENST00000417088 FLT3LGP49771 235 aa18.21■□□□□ 0.51
RPS28-201ENST00000417088 UBXN2AP68543 259 aa18.21■□□□□ 0.51
RPS28-201ENST00000417088 SPP2Q13103 211 aa18.21■□□□□ 0.51
RPS28-201ENST00000417088 TTC39AQ5SRH9 613 aa18.21■□□□□ 0.51
RPS28-201ENST00000417088 SLAIN1Q8ND83 568 aa18.21■□□□□ 0.51
RPS28-201ENST00000417088 RNF208Q9H0X6 261 aa18.21■□□□□ 0.51
RPS28-201ENST00000417088 MGAMO43451 1857 aa18.2■□□□□ 0.5
RPS28-201ENST00000417088 ADCY3O60266 1144 aa18.2■□□□□ 0.5
RPS28-201ENST00000417088 CCDC158Q5M9N0 1113 aa18.2■□□□□ 0.5
RPS28-201ENST00000417088 NAA16Q6N069 864 aaPredicted RBP18.2■□□□□ 0.5
RPS28-201ENST00000417088 PROCA1Q8NCQ7 364 aaPredicted RBP18.2■□□□□ 0.5
RPS28-201ENST00000417088 ZNF280CQ8ND82 737 aa18.2■□□□□ 0.5
RPS28-201ENST00000417088 COLQQ9Y215 455 aaPredicted RBP18.2■□□□□ 0.5
RPS28-201ENST00000417088 H0YGN5 161 aa18.19■□□□□ 0.5
RPS28-201ENST00000417088 TNPO2O14787 897 aaKnown RBP18.19■□□□□ 0.5
RPS28-201ENST00000417088 SURF6O75683 361 aaKnown RBP18.19■□□□□ 0.5
RPS28-201ENST00000417088 BAG3O95817 575 aa18.19■□□□□ 0.5
RPS28-201ENST00000417088 CYP2E1P05181 493 aaPredicted RBP18.19■□□□□ 0.5
RPS28-201ENST00000417088 PPP4CP60510 307 aa18.19■□□□□ 0.5
RPS28-201ENST00000417088 OS9Q13438 667 aaPredicted RBP18.19■□□□□ 0.5
RPS28-201ENST00000417088 IRF5Q13568 498 aa18.19■□□□□ 0.5
RPS28-201ENST00000417088 UBE2Q1Q7Z7E8 422 aa18.19■□□□□ 0.5
RPS28-201ENST00000417088 ANKRD13CQ8N6S4 541 aa18.19■□□□□ 0.5
RPS28-201ENST00000417088 ZNF512BQ96KM6 892 aaPredicted RBP18.19■□□□□ 0.5
RPS28-201ENST00000417088 NOL10Q9BSC4 688 aaKnown RBP18.19■□□□□ 0.5
RPS28-201ENST00000417088 TBC1D2Q9BYX2 928 aa18.19■□□□□ 0.5
RPS28-201ENST00000417088 UNC93B1Q9H1C4 597 aa18.19■□□□□ 0.5
RPS28-201ENST00000417088 C1orf115Q9H7X2 142 aa18.19■□□□□ 0.5
RPS28-201ENST00000417088 AATFQ9NY61 560 aaKnown RBP eCLIP18.19■□□□□ 0.51e-6■□□□□ 10
RPS28-201ENST00000417088 PI4KBQ9UBF8 816 aa18.19■□□□□ 0.5
RPS28-201ENST00000417088 HERC5Q9UII4 1024 aaKnown RBP18.19■□□□□ 0.5
RPS28-201ENST00000417088 PNMA3Q9UL41 463 aa18.19■□□□□ 0.5
RPS28-201ENST00000417088 USP17L5A8MUK1 530 aa18.18■□□□□ 0.5
RPS28-201ENST00000417088 ELNP15502 786 aa18.18■□□□□ 0.5
RPS28-201ENST00000417088 HMGCS2P54868 508 aa18.18■□□□□ 0.5
RPS28-201ENST00000417088 ADGRA1Q86SQ6 560 aa18.18■□□□□ 0.5
RPS28-201ENST00000417088 PXYLP1Q8TE99 480 aa18.18■□□□□ 0.5
RPS28-201ENST00000417088 DHX36Q9H2U1 1008 aaKnown RBP18.18■□□□□ 0.5
RPS28-201ENST00000417088 NOP58Q9Y2X3 529 aaKnown RBP18.18■□□□□ 0.5
RPS28-201ENST00000417088 ZBTB7BO15156 539 aaPredicted RBP18.17■□□□□ 0.5
RPS28-201ENST00000417088 PLCG2P16885 1265 aa18.17■□□□□ 0.5
RPS28-201ENST00000417088 ZAP70P43403 619 aa18.17■□□□□ 0.5
RPS28-201ENST00000417088 FAM110CQ1W6H9 321 aa18.17■□□□□ 0.5
RPS28-201ENST00000417088 SH3D19Q5HYK7 790 aa18.17■□□□□ 0.5
RPS28-201ENST00000417088 MAPKAPK5Q8IW41 473 aa18.17■□□□□ 0.5
RPS28-201ENST00000417088 U2AF1L4Q8WU68 220 aaKnown RBP18.17■□□□□ 0.5
RPS28-201ENST00000417088 TGFBRAP1Q8WUH2 860 aa18.17■□□□□ 0.5
RPS28-201ENST00000417088 PIH1D3Q9NQM4 214 aaKnown RBP18.17■□□□□ 0.5
RPS28-201ENST00000417088 INHAP05111 366 aa18.16■□□□□ 0.5
RPS28-201ENST00000417088 RLBP1P12271 317 aa18.16■□□□□ 0.5
RPS28-201ENST00000417088 FXR1P51114 621 aaKnown RBP eCLIP18.16■□□□□ 0.5
RPS28-201ENST00000417088 JAG1P78504 1218 aa18.16■□□□□ 0.5
RPS28-201ENST00000417088 FTSJ3Q8IY81 847 aaKnown RBP18.16■□□□□ 0.5
RPS28-201ENST00000417088 DPF3Q92784 378 aa18.16■□□□□ 0.5
RPS28-201ENST00000417088 COA7Q96BR5 231 aa18.16■□□□□ 0.5
RPS28-201ENST00000417088 DNAJC18Q9H819 358 aa18.16■□□□□ 0.5
RPS28-201ENST00000417088 AS3MTQ9HBK9 375 aa18.16■□□□□ 0.5
RPS28-201ENST00000417088 TLR7Q9NYK1 1049 aaKnown RBP18.16■□□□□ 0.5
RPS28-201ENST00000417088 DBNLQ9UJU6 430 aaKnown RBP18.16■□□□□ 0.5
RPS28-201ENST00000417088 TRIOBPQ9H2D6 2365 aa18.16■□□□□ 0.5
RPS28-201ENST00000417088 DOCK3Q8IZD9 2030 aa18.15■□□□□ 0.5
RPS28-201ENST00000417088 IGSF3O75054 1194 aa18.15■□□□□ 0.5
RPS28-201ENST00000417088 SGPL1O95470 568 aa18.15■□□□□ 0.5
RPS28-201ENST00000417088 GCLCP48506 637 aaPredicted RBP18.15■□□□□ 0.5
RPS28-201ENST00000417088 HNRNPUQ00839 825 aaKnown RBP eCLIP18.15■□□□□ 0.5
RPS28-201ENST00000417088 PABPC4Q13310 644 aaKnown RBP eCLIP18.15■□□□□ 0.59e-9■■■□□ 15.1
RPS28-201ENST00000417088 METTL16Q86W50 562 aaKnown RBP18.15■□□□□ 0.5
RPS28-201ENST00000417088 FOXP4Q8IVH2 680 aaPredicted RBP18.15■□□□□ 0.5
RPS28-201ENST00000417088 ITPRIPQ8IWB1 547 aa18.15■□□□□ 0.5
RPS28-201ENST00000417088 WDR18Q9BV38 432 aa18.15■□□□□ 0.5
RPS28-201ENST00000417088 CCDC8Q9H0W5 538 aaPredicted RBP18.15■□□□□ 0.5
RPS28-201ENST00000417088 ASCC2Q9H1I8 757 aaPredicted RBP18.15■□□□□ 0.5
RPS28-201ENST00000417088 FLT1P17948 1338 aa18.15■□□□□ 0.5
RPS28-201ENST00000417088 LOC285556D6RIA3 1793 aa18.14■□□□□ 0.5
RPS28-201ENST00000417088 SIPA1L1O43166 1804 aa18.14■□□□□ 0.5
RPS28-201ENST00000417088 EAF2Q96CJ1 260 aaPredicted RBP18.14■□□□□ 0.49
RPS28-201ENST00000417088 HTATIP2Q9BUP3 242 aa18.14■□□□□ 0.49
RPS28-201ENST00000417088 PALD1Q9ULE6 856 aa18.14■□□□□ 0.49
RPS28-201ENST00000417088 ATAD5Q96QE3 1844 aa18.14■□□□□ 0.49
RPS28-201ENST00000417088 MAST2Q6P0Q8 1798 aa18.13■□□□□ 0.49
RPS28-201ENST00000417088 FARP2O94887 1054 aaPredicted RBP18.13■□□□□ 0.49
RPS28-201ENST00000417088 ASNSP08243 561 aa18.13■□□□□ 0.49
RPS28-201ENST00000417088 BACE1P56817 501 aa18.13■□□□□ 0.49
RPS28-201ENST00000417088 DYNLL1P63167 89 aaKnown RBP18.13■□□□□ 0.49
RPS28-201ENST00000417088 MTMR2Q13614 643 aa18.13■□□□□ 0.49
RPS28-201ENST00000417088 SHROOM1Q2M3G4 852 aaPredicted RBP18.13■□□□□ 0.49
RPS28-201ENST00000417088 TAOK2Q9UL54 1235 aa18.13■□□□□ 0.49
RPS28-201ENST00000417088 CYP7A1P22680 504 aa18.12■□□□□ 0.49
RPS28-201ENST00000417088 CRACR2BQ8N4Y2 399 aaPredicted RBP18.12■□□□□ 0.49
RPS28-201ENST00000417088 DEFB118Q96PH6 123 aa18.12■□□□□ 0.49
RPS28-201ENST00000417088 PAK6Q9NQU5 681 aaPredicted RBP18.12■□□□□ 0.49
RPS28-201ENST00000417088 MORF4L1Q9UBU8 362 aa18.12■□□□□ 0.49
RPS28-201ENST00000417088 SAP30BPQ9UHR5 308 aaKnown RBP18.12■□□□□ 0.49
RPS28-201ENST00000417088 MYO5AQ9Y4I1 1855 aaKnown RBP18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms