RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 DTHD1Q6ZMT9 781 aa12.72□□□□□ -0.37
PTPRF-204ENST00000412568 ATG9AQ7Z3C6 839 aa12.72□□□□□ -0.37
PTPRF-204ENST00000412568 UBXN4Q92575 508 aa12.72□□□□□ -0.37
PTPRF-204ENST00000412568 CLSTN2Q9H4D0 955 aa12.72□□□□□ -0.37
PTPRF-204ENST00000412568 DBNDD1Q9H9R9 158 aa12.72□□□□□ -0.37
PTPRF-204ENST00000412568 TAF6LQ9Y6J9 622 aa12.72□□□□□ -0.37
PTPRF-204ENST00000412568 MAP2P11137 1827 aaKnown RBP12.72□□□□□ -0.37
PTPRF-204ENST00000412568 MATR3P43243 847 aaKnown RBP eCLIP12.72□□□□□ -0.377e-14■■■■■ 41.6
PTPRF-204ENST00000412568 KANK3Q6NY19 840 aa12.72□□□□□ -0.37
PTPRF-204ENST00000412568 APOA5Q6Q788 366 aa12.72□□□□□ -0.37
PTPRF-204ENST00000412568 GPIHBP1Q8IV16 184 aa12.72□□□□□ -0.37
PTPRF-204ENST00000412568 NSUN7Q8NE18 718 aaKnown RBP12.72□□□□□ -0.37
PTPRF-204ENST00000412568 SMARCC2Q8TAQ2 1214 aa12.72□□□□□ -0.37
PTPRF-204ENST00000412568 GPKOWQ92917 476 aaPredicted RBP eCLIP12.72□□□□□ -0.37
PTPRF-204ENST00000412568 CEMIPQ8WUJ3 1361 aa12.72□□□□□ -0.37
PTPRF-204ENST00000412568 ATP10DQ9P241 1426 aa12.72□□□□□ -0.37
PTPRF-204ENST00000412568 PPIP5K2O43314 1243 aa12.72□□□□□ -0.37
PTPRF-204ENST00000412568 BTDP43251 543 aa12.72□□□□□ -0.37
PTPRF-204ENST00000412568 ARHGEF1Q92888 912 aaKnown RBP12.72□□□□□ -0.37
PTPRF-204ENST00000412568 ACBD3Q9H3P7 528 aa12.72□□□□□ -0.37
PTPRF-204ENST00000412568 CWC15Q9P013 229 aaKnown RBP12.72□□□□□ -0.37
PTPRF-204ENST00000412568 SP4Q02446 784 aa12.71□□□□□ -0.37
PTPRF-204ENST00000412568 TDRD12Q587J7 1177 aaKnown RBP12.71□□□□□ -0.37
PTPRF-204ENST00000412568 LRRC47Q8N1G4 583 aaKnown RBP12.71□□□□□ -0.37
PTPRF-204ENST00000412568 KAZALD1Q96I82 304 aa12.71□□□□□ -0.37
PTPRF-204ENST00000412568 CLIC4Q9Y696 253 aa12.71□□□□□ -0.37
PTPRF-204ENST00000412568 USP17L8P0C7I0 530 aa12.71□□□□□ -0.37
PTPRF-204ENST00000412568 CCDC40Q4G0X9 1142 aa12.71□□□□□ -0.37
PTPRF-204ENST00000412568 DYNLL2Q96FJ2 89 aa12.71□□□□□ -0.37
PTPRF-204ENST00000412568 PPP1R9BQ96SB3 815 aa12.71□□□□□ -0.37
PTPRF-204ENST00000412568 ZSCAN10Q96SZ4 725 aaPredicted RBP12.71□□□□□ -0.37
PTPRF-204ENST00000412568 EXOC1Q9NV70 894 aa12.71□□□□□ -0.37
PTPRF-204ENST00000412568 ZDHHC9Q9Y397 364 aa12.71□□□□□ -0.37
PTPRF-204ENST00000412568 TXKP42681 527 aa12.71□□□□□ -0.38
PTPRF-204ENST00000412568 SYCP1Q15431 976 aa12.71□□□□□ -0.38
PTPRF-204ENST00000412568 RUFY1Q96T51 708 aa12.71□□□□□ -0.38
PTPRF-204ENST00000412568 CGNQ9P2M7 1197 aaKnown RBP12.71□□□□□ -0.38
PTPRF-204ENST00000412568 FRMPD2Q68DX3 1309 aaPredicted RBP12.71□□□□□ -0.38
PTPRF-204ENST00000412568 FKBP15Q5T1M5 1219 aa12.7□□□□□ -0.38
PTPRF-204ENST00000412568 C2CD5Q86YS7 1000 aa12.7□□□□□ -0.38
PTPRF-204ENST00000412568 PNMA1Q8ND90 353 aa12.7□□□□□ -0.38
PTPRF-204ENST00000412568 RBM28Q9NW13 759 aaKnown RBP12.7□□□□□ -0.38
PTPRF-204ENST00000412568 H0YHG0 523 aa12.7□□□□□ -0.38
PTPRF-204ENST00000412568 GNA11P29992 359 aa12.7□□□□□ -0.38
PTPRF-204ENST00000412568 USH1GQ495M9 461 aa12.7□□□□□ -0.38
PTPRF-204ENST00000412568 FBXO18Q8NFZ0 1043 aa12.7□□□□□ -0.38
PTPRF-204ENST00000412568 PRIMPOLQ96LW4 560 aa12.7□□□□□ -0.38
PTPRF-204ENST00000412568 ZBTB21Q9ULJ3 1066 aa12.7□□□□□ -0.38
PTPRF-204ENST00000412568 DYNC1I1O14576 645 aa12.7□□□□□ -0.38
PTPRF-204ENST00000412568 SLC1A4P43007 532 aa12.7□□□□□ -0.38
PTPRF-204ENST00000412568 AMPD3Q01432 767 aa12.7□□□□□ -0.38
PTPRF-204ENST00000412568 PLS1Q14651 629 aa12.7□□□□□ -0.38
PTPRF-204ENST00000412568 KIF4BQ2VIQ3 1234 aa12.7□□□□□ -0.38
PTPRF-204ENST00000412568 CEP135Q66GS9 1140 aa12.7□□□□□ -0.38
PTPRF-204ENST00000412568 FNBP4Q8N3X1 1017 aaPredicted RBP12.7□□□□□ -0.38
PTPRF-204ENST00000412568 SPDYE3A6NKU9 549 aa12.7□□□□□ -0.38
PTPRF-204ENST00000412568 KIF2AO00139 706 aaPredicted RBP12.7□□□□□ -0.38
PTPRF-204ENST00000412568 RPS6KA4O75676 772 aa12.7□□□□□ -0.38
PTPRF-204ENST00000412568 BMP15O95972 392 aa12.7□□□□□ -0.38
PTPRF-204ENST00000412568 ARID4AP29374 1257 aaPredicted RBP12.7□□□□□ -0.38
PTPRF-204ENST00000412568 RAD51AP2Q09MP3 1159 aa12.7□□□□□ -0.38
PTPRF-204ENST00000412568 SNW1Q13573 536 aaKnown RBP12.7□□□□□ -0.38
PTPRF-204ENST00000412568 ZNF827Q17R98 1081 aa12.7□□□□□ -0.38
PTPRF-204ENST00000412568 ODF2Q5BJF6 829 aa12.7□□□□□ -0.38
PTPRF-204ENST00000412568 TTC38Q5R3I4 469 aa12.7□□□□□ -0.38
PTPRF-204ENST00000412568 TRMT44Q8IYL2 757 aaKnown RBP12.7□□□□□ -0.38
PTPRF-204ENST00000412568 EEF2KMTQ96G04 330 aa12.7□□□□□ -0.38
PTPRF-204ENST00000412568 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.7□□□□□ -0.381e-6■□□□□ 9.9
PTPRF-204ENST00000412568 MINPP1Q9UNW1 487 aa12.7□□□□□ -0.38
PTPRF-204ENST00000412568 THRAP3Q9Y2W1 955 aaKnown RBP12.7□□□□□ -0.38
PTPRF-204ENST00000412568 V9GYY5 206 aaPredicted RBP12.7□□□□□ -0.38
PTPRF-204ENST00000412568 RIMS1Q86UR5 1692 aaKnown RBP12.69□□□□□ -0.38
PTPRF-204ENST00000412568 ZSCAN12O43309 604 aa12.69□□□□□ -0.38
PTPRF-204ENST00000412568 CCNT1O60563 726 aaKnown RBP12.69□□□□□ -0.38
PTPRF-204ENST00000412568 ITPK1Q13572 414 aa12.69□□□□□ -0.38
PTPRF-204ENST00000412568 TOB2Q14106 344 aaPredicted RBP12.69□□□□□ -0.38
PTPRF-204ENST00000412568 ATL3Q6DD88 541 aa12.69□□□□□ -0.38
PTPRF-204ENST00000412568 POLD1P28340 1107 aa12.69□□□□□ -0.38
PTPRF-204ENST00000412568 CCT6AP40227 531 aaKnown RBP12.69□□□□□ -0.38
PTPRF-204ENST00000412568 TNIP1Q15025 636 aa12.69□□□□□ -0.38
PTPRF-204ENST00000412568 PPP4R3BQ5MIZ7 849 aa12.69□□□□□ -0.38
PTPRF-204ENST00000412568 CPXCR1Q8N123 301 aa12.69□□□□□ -0.38
PTPRF-204ENST00000412568 IQUBQ8NA54 791 aa12.69□□□□□ -0.38
PTPRF-204ENST00000412568 STRBPQ96SI9 672 aaKnown RBP12.69□□□□□ -0.38
PTPRF-204ENST00000412568 PCDHA7Q9UN72 937 aa12.69□□□□□ -0.38
PTPRF-204ENST00000412568 A0A0G2JLW4 131 aa12.69□□□□□ -0.38
PTPRF-204ENST00000412568 MYCNP04198 464 aaPredicted RBP12.69□□□□□ -0.38
PTPRF-204ENST00000412568 MMP10P09238 476 aa12.69□□□□□ -0.38
PTPRF-204ENST00000412568 NR5A1Q13285 461 aa12.69□□□□□ -0.38
PTPRF-204ENST00000412568 RASGRP4Q8TDF6 673 aa12.69□□□□□ -0.38
PTPRF-204ENST00000412568 TSG101Q99816 390 aa12.69□□□□□ -0.38
PTPRF-204ENST00000412568 COL3A1P02461 1466 aaPredicted RBP12.68□□□□□ -0.38
PTPRF-204ENST00000412568 ARHGEF28Q8N1W1 1705 aaKnown RBP12.68□□□□□ -0.38
PTPRF-204ENST00000412568 ELP1O95163 1332 aa12.68□□□□□ -0.38
PTPRF-204ENST00000412568 MECOMQ03112 1051 aa12.68□□□□□ -0.38
PTPRF-204ENST00000412568 PNOCQ13519 176 aa12.68□□□□□ -0.38
PTPRF-204ENST00000412568 LEKR1Q6ZMV7 388 aa12.68□□□□□ -0.38
PTPRF-204ENST00000412568 BLZF1Q9H2G9 400 aa12.68□□□□□ -0.38
PTPRF-204ENST00000412568 CYP2D6P10635 497 aa12.68□□□□□ -0.38
PTPRF-204ENST00000412568 TRIM21P19474 475 aaKnown RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms