RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 TESPA1A2RU30 521 aaPredicted RBP25.06■■□□□ 1.6
VSX1-204ENST00000409958 CTNND1O60716 968 aaKnown RBP25.06■■□□□ 1.6
VSX1-204ENST00000409958 GTF2A2P52657 109 aa25.06■■□□□ 1.6
VSX1-204ENST00000409958 PDE1AP54750 535 aa25.06■■□□□ 1.6
VSX1-204ENST00000409958 METTL16Q86W50 562 aaKnown RBP25.06■■□□□ 1.6
VSX1-204ENST00000409958 CHD1LQ86WJ1 897 aa25.06■■□□□ 1.6
VSX1-204ENST00000409958 FOXP4Q8IVH2 680 aaPredicted RBP25.06■■□□□ 1.6
VSX1-204ENST00000409958 TNS4Q8IZW8 715 aa25.06■■□□□ 1.6
VSX1-204ENST00000409958 LCORLQ8N3X6 602 aa25.06■■□□□ 1.6
VSX1-204ENST00000409958 MS4A4AQ96JQ5 239 aa25.06■■□□□ 1.6
VSX1-204ENST00000409958 SAP30BPQ9UHR5 308 aaKnown RBP25.06■■□□□ 1.6
VSX1-204ENST00000409958 FAM196BA6NMK8 535 aa25.05■■□□□ 1.6
VSX1-204ENST00000409958 CHGBP05060 677 aa25.05■■□□□ 1.6
VSX1-204ENST00000409958 HLA-DOAP06340 250 aa25.05■■□□□ 1.6
VSX1-204ENST00000409958 IFNL1Q8IU54 200 aa25.05■■□□□ 1.6
VSX1-204ENST00000409958 IRF6O14896 467 aa25.04■■□□□ 1.6
VSX1-204ENST00000409958 MBD4O95243 580 aa25.04■■□□□ 1.6
VSX1-204ENST00000409958 ALDH1A1P00352 501 aa25.04■■□□□ 1.6
VSX1-204ENST00000409958 ZFYP08048 801 aaPredicted RBP25.04■■□□□ 1.6
VSX1-204ENST00000409958 LRRFIP1Q32MZ4 808 aaKnown RBP25.04■■□□□ 1.6
VSX1-204ENST00000409958 ARMT1Q9H993 441 aa25.04■■□□□ 1.6
VSX1-204ENST00000409958 PICK1Q9NRD5 415 aa25.04■■□□□ 1.6
VSX1-204ENST00000409958 SIPA1L1O43166 1804 aa25.03■■□□□ 1.6
VSX1-204ENST00000409958 MYH1P12882 1939 aa25.03■■□□□ 1.6
VSX1-204ENST00000409958 OTUD7BQ6GQQ9 843 aa25.03■■□□□ 1.6
VSX1-204ENST00000409958 IGF2BP3O00425 579 aaKnown RBP eCLIP25.02■■□□□ 1.6
VSX1-204ENST00000409958 RNF113AO15541 343 aaKnown RBP25.02■■□□□ 1.6
VSX1-204ENST00000409958 SNAPC2Q13487 334 aa25.02■■□□□ 1.6
VSX1-204ENST00000409958 TTC6Q86TZ1 520 aa25.02■■□□□ 1.6
VSX1-204ENST00000409958 CRACR2BQ8N4Y2 399 aaPredicted RBP25.02■■□□□ 1.6
VSX1-204ENST00000409958 BRI3BPQ8WY22 251 aa25.02■■□□□ 1.6
VSX1-204ENST00000409958 CFHR5Q9BXR6 569 aa25.02■■□□□ 1.6
VSX1-204ENST00000409958 PUS7LQ9H0K6 701 aaKnown RBP25.02■■□□□ 1.6
VSX1-204ENST00000409958 KCNH4Q9UQ05 1017 aa25.02■■□□□ 1.6
VSX1-204ENST00000409958 CCL15-CCL14A0A0B4J2E2 113 aa25.01■■□□□ 1.59
VSX1-204ENST00000409958 CETPP11597 493 aa25.01■■□□□ 1.59
VSX1-204ENST00000409958 PTPRAP18433 802 aa25.01■■□□□ 1.59
VSX1-204ENST00000409958 CCL15Q16663 113 aa25.01■■□□□ 1.59
VSX1-204ENST00000409958 SDR42E1Q8WUS8 393 aa25.01■■□□□ 1.59
VSX1-204ENST00000409958 APPBP2Q92624 585 aa25.01■■□□□ 1.59
VSX1-204ENST00000409958 PTPN18Q99952 460 aa25.01■■□□□ 1.59
VSX1-204ENST00000409958 TRIM34Q9BYJ4 488 aa25.01■■□□□ 1.59
VSX1-204ENST00000409958 EHD4Q9H223 541 aa25.01■■□□□ 1.59
VSX1-204ENST00000409958 DNAJC18Q9H819 358 aa25.01■■□□□ 1.59
VSX1-204ENST00000409958 DCP1AQ9NPI6 582 aaPredicted RBP25.01■■□□□ 1.59
VSX1-204ENST00000409958 CAP2P40123 477 aa25■■□□□ 1.59
VSX1-204ENST00000409958 FSD1Q9BTV5 496 aa25■■□□□ 1.59
VSX1-204ENST00000409958 ATP8A2Q9NTI2 1148 aa25■■□□□ 1.59
VSX1-204ENST00000409958 DOCK1Q14185 1865 aa25■■□□□ 1.59
VSX1-204ENST00000409958 SLC4A8Q2Y0W8 1093 aa24.99■■□□□ 1.59
VSX1-204ENST00000409958 MCM9Q9NXL9 1143 aa24.99■■□□□ 1.59
VSX1-204ENST00000409958 SERPINB13Q9UIV8 391 aa24.99■■□□□ 1.59
VSX1-204ENST00000409958 ZHX2Q9Y6X8 837 aa24.99■■□□□ 1.59
VSX1-204ENST00000409958 DDX60LQ5H9U9 1706 aaKnown RBP24.99■■□□□ 1.59
VSX1-204ENST00000409958 NAV1Q8NEY1 1877 aa24.98■■□□□ 1.59
VSX1-204ENST00000409958 CXCL11O14625 94 aa24.98■■□□□ 1.59
VSX1-204ENST00000409958 PRKAB2O43741 272 aa24.98■■□□□ 1.59
VSX1-204ENST00000409958 TBC1D8O95759 1140 aa24.98■■□□□ 1.59
VSX1-204ENST00000409958 POLR3DP05423 398 aaPredicted RBP24.98■■□□□ 1.59
VSX1-204ENST00000409958 RRP1BQ14684 758 aaKnown RBP24.98■■□□□ 1.59
VSX1-204ENST00000409958 OSBP2Q969R2 916 aa24.98■■□□□ 1.59
VSX1-204ENST00000409958 EVI5LQ96CN4 794 aa24.98■■□□□ 1.59
VSX1-204ENST00000409958 OSBPL3Q9H4L5 887 aa24.98■■□□□ 1.59
VSX1-204ENST00000409958 PLCD1P51178 756 aa24.97■■□□□ 1.59
VSX1-204ENST00000409958 NOM1Q5C9Z4 860 aaKnown RBP24.97■■□□□ 1.59
VSX1-204ENST00000409958 PLEKHM2Q8IWE5 1019 aa24.97■■□□□ 1.59
VSX1-204ENST00000409958 STRBPQ96SI9 672 aaKnown RBP24.97■■□□□ 1.59
VSX1-204ENST00000409958 AFG3L2Q9Y4W6 797 aa24.97■■□□□ 1.59
VSX1-204ENST00000409958 SLC4A4Q9Y6R1 1079 aa24.97■■□□□ 1.59
VSX1-204ENST00000409958 IFFO2Q5TF58 517 aa24.96■■□□□ 1.59
VSX1-204ENST00000409958 GINM1Q9NU53 330 aa24.96■■□□□ 1.59
VSX1-204ENST00000409958 CASP8AP2Q9UKL3 1982 aa24.95■■□□□ 1.59
VSX1-204ENST00000409958 TATDN1Q6P1N9 297 aa24.95■■□□□ 1.58
VSX1-204ENST00000409958 DDRGK1Q96HY6 314 aa24.95■■□□□ 1.58
VSX1-204ENST00000409958 TBC1D2Q9BYX2 928 aa24.95■■□□□ 1.58
VSX1-204ENST00000409958 ZCCHC17Q9NP64 241 aaKnown RBP24.95■■□□□ 1.58
VSX1-204ENST00000409958 ASNSP08243 561 aa24.94■■□□□ 1.58
VSX1-204ENST00000409958 GABPAQ06546 454 aa24.94■■□□□ 1.58
VSX1-204ENST00000409958 TICAM2Q86XR7 235 aa24.94■■□□□ 1.58
VSX1-204ENST00000409958 FAM43AQ8N2R8 423 aa24.94■■□□□ 1.58
VSX1-204ENST00000409958 FRMD4AQ9P2Q2 1039 aaPredicted RBP24.94■■□□□ 1.58
VSX1-204ENST00000409958 TAOK2Q9UL54 1235 aa24.94■■□□□ 1.58
VSX1-204ENST00000409958 BTBD19C9JJ37 291 aa24.93■■□□□ 1.58
VSX1-204ENST00000409958 GPAA1O43292 621 aa24.93■■□□□ 1.58
VSX1-204ENST00000409958 ZMYM1Q5SVZ6 1142 aa24.93■■□□□ 1.58
VSX1-204ENST00000409958 R3HDMLQ9H3Y0 253 aa24.93■■□□□ 1.58
VSX1-204ENST00000409958 PHIPQ8WWQ0 1821 aa24.93■■□□□ 1.58
VSX1-204ENST00000409958 ATAD5Q96QE3 1844 aa24.93■■□□□ 1.58
VSX1-204ENST00000409958 A0A0G2JLL6 359 aaPredicted RBP24.92■■□□□ 1.58
VSX1-204ENST00000409958 USP17L5A8MUK1 530 aa24.92■■□□□ 1.58
VSX1-204ENST00000409958 M0R2C6 588 aa24.92■■□□□ 1.58
VSX1-204ENST00000409958 GPR25O00155 361 aa24.92■■□□□ 1.58
VSX1-204ENST00000409958 CAPN15O75808 1086 aa24.92■■□□□ 1.58
VSX1-204ENST00000409958 GNAT2P19087 354 aa24.92■■□□□ 1.58
VSX1-204ENST00000409958 CRHR2Q13324 411 aa24.92■■□□□ 1.58
VSX1-204ENST00000409958 MOGSQ13724 837 aa24.92■■□□□ 1.58
VSX1-204ENST00000409958 GIMAP6Q6P9H5 292 aa24.92■■□□□ 1.58
VSX1-204ENST00000409958 PRRT2Q7Z6L0 340 aaPredicted RBP24.92■■□□□ 1.58
VSX1-204ENST00000409958 CCDC84Q86UT8 332 aaPredicted RBP24.92■■□□□ 1.58
VSX1-204ENST00000409958 AMOTL1Q8IY63 956 aa24.92■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms