RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 REM2Q8IYK8 340 aaPredicted RBP8.28□□□□□ -1.08
SCN9A-202ENST00000409435 TXLNBQ8N3L3 684 aa8.28□□□□□ -1.08
SCN9A-202ENST00000409435 XAGE2Q96GT9 111 aa8.28□□□□□ -1.08
SCN9A-202ENST00000409435 GLT8D2Q9H1C3 349 aa8.28□□□□□ -1.08
SCN9A-202ENST00000409435 HEG1Q9ULI3 1381 aa8.28□□□□□ -1.08
SCN9A-202ENST00000409435 GOLGA6L9A6NEM1 432 aa8.28□□□□□ -1.08
SCN9A-202ENST00000409435 DDNO94850 711 aaPredicted RBP8.28□□□□□ -1.08
SCN9A-202ENST00000409435 CETN1Q12798 172 aa8.28□□□□□ -1.08
SCN9A-202ENST00000409435 USH1GQ495M9 461 aa8.28□□□□□ -1.08
SCN9A-202ENST00000409435 TSG101Q99816 390 aa8.28□□□□□ -1.08
SCN9A-202ENST00000409435 CRACR2AQ9BSW2 395 aa8.28□□□□□ -1.08
SCN9A-202ENST00000409435 RTL9Q8NET4 1388 aa8.28□□□□□ -1.08
SCN9A-202ENST00000409435 CA12O43570 354 aa8.28□□□□□ -1.08
SCN9A-202ENST00000409435 EVI5O60447 810 aa8.28□□□□□ -1.08
SCN9A-202ENST00000409435 SMC2O95347 1197 aa8.28□□□□□ -1.08
SCN9A-202ENST00000409435 EIF4A1P60842 406 aaKnown RBP8.28□□□□□ -1.08
SCN9A-202ENST00000409435 CCDC181Q5TID7 509 aa8.28□□□□□ -1.08
SCN9A-202ENST00000409435 USP50Q70EL3 339 aaPredicted RBP8.28□□□□□ -1.08
SCN9A-202ENST00000409435 ANKRD13AQ8IZ07 590 aa8.28□□□□□ -1.08
SCN9A-202ENST00000409435 CRAMP1Q96RY5 1269 aa8.28□□□□□ -1.08
SCN9A-202ENST00000409435 PIDD1Q9HB75 910 aa8.28□□□□□ -1.08
SCN9A-202ENST00000409435 ZNF215Q9UL58 517 aaPredicted RBP8.28□□□□□ -1.08
SCN9A-202ENST00000409435 KIF1BO60333 1816 aa8.28□□□□□ -1.08
SCN9A-202ENST00000409435 A0A1B0GUL7 405 aa8.28□□□□□ -1.08
SCN9A-202ENST00000409435 TOMM70O94826 608 aa8.28□□□□□ -1.08
SCN9A-202ENST00000409435 CFBP00751 764 aa8.28□□□□□ -1.08
SCN9A-202ENST00000409435 MARCKSP29966 332 aaPredicted RBP8.28□□□□□ -1.08
SCN9A-202ENST00000409435 COPB2P35606 906 aa8.28□□□□□ -1.08
SCN9A-202ENST00000409435 UBXN4Q92575 508 aa8.28□□□□□ -1.08
SCN9A-202ENST00000409435 PDRG1Q9NUG6 133 aa8.28□□□□□ -1.08
SCN9A-202ENST00000409435 CLIP2Q9UDT6 1046 aa8.28□□□□□ -1.08
SCN9A-202ENST00000409435 MRPL11Q9Y3B7 192 aaKnown RBP8.28□□□□□ -1.08
SCN9A-202ENST00000409435 CPSF1Q10570 1443 aaKnown RBP8.28□□□□□ -1.08
SCN9A-202ENST00000409435 NBPF7P0C2Y1 421 aaPredicted RBP8.28□□□□□ -1.08
SCN9A-202ENST00000409435 RNF214Q8ND24 703 aa8.28□□□□□ -1.08
SCN9A-202ENST00000409435 PRR36Q9H6K5 1346 aa8.28□□□□□ -1.08
SCN9A-202ENST00000409435 ASXL1Q8IXJ9 1541 aa8.27□□□□□ -1.08
SCN9A-202ENST00000409435 USP17L5A8MUK1 530 aa8.27□□□□□ -1.09
SCN9A-202ENST00000409435 CCDC144CPQ8IYA2 1237 aa8.27□□□□□ -1.09
SCN9A-202ENST00000409435 NKX2-3Q8TAU0 364 aa8.27□□□□□ -1.09
SCN9A-202ENST00000409435 SSH1Q8WYL5 1049 aa8.27□□□□□ -1.09
SCN9A-202ENST00000409435 PABPN1LA6NDY0 278 aaKnown RBP8.27□□□□□ -1.09
SCN9A-202ENST00000409435 KIF2AO00139 706 aaPredicted RBP8.27□□□□□ -1.09
SCN9A-202ENST00000409435 CCPG1Q9ULG6 757 aa8.27□□□□□ -1.09
SCN9A-202ENST00000409435 TESPA1A2RU30 521 aaPredicted RBP8.27□□□□□ -1.09
SCN9A-202ENST00000409435 LINC00116Q8NCU8 138 aa8.27□□□□□ -1.09
SCN9A-202ENST00000409435 GCNAQ96QF7 691 aa8.27□□□□□ -1.09
SCN9A-202ENST00000409435 GTPBP4Q9BZE4 634 aaKnown RBP8.27□□□□□ -1.09
SCN9A-202ENST00000409435 IMPG2Q9BZV3 1241 aa8.27□□□□□ -1.09
SCN9A-202ENST00000409435 LRRC27Q9C0I9 530 aa8.27□□□□□ -1.09
SCN9A-202ENST00000409435 RTEL1Q9NZ71 1219 aa8.27□□□□□ -1.09
SCN9A-202ENST00000409435 PLEKHG2Q9H7P9 1386 aa8.27□□□□□ -1.09
SCN9A-202ENST00000409435 RNF113AO15541 343 aaKnown RBP8.27□□□□□ -1.09
SCN9A-202ENST00000409435 ASNSP08243 561 aa8.27□□□□□ -1.09
SCN9A-202ENST00000409435 IGFBP4P22692 258 aa8.27□□□□□ -1.09
SCN9A-202ENST00000409435 USP17L2Q6R6M4 530 aa8.27□□□□□ -1.09
SCN9A-202ENST00000409435 KCNG4Q8TDN1 519 aa8.27□□□□□ -1.09
SCN9A-202ENST00000409435 IFT74Q96LB3 600 aa8.27□□□□□ -1.09
SCN9A-202ENST00000409435 SPATA32Q96LK8 384 aa8.27□□□□□ -1.09
SCN9A-202ENST00000409435 CEP83Q9Y592 693 aa8.27□□□□□ -1.09
SCN9A-202ENST00000409435 DCDC2CA8MYV0 355 aa8.26□□□□□ -1.09
SCN9A-202ENST00000409435 UBE2Q2LH0YL09 131 aa8.26□□□□□ -1.09
SCN9A-202ENST00000409435 GNA11P29992 359 aa8.26□□□□□ -1.09
SCN9A-202ENST00000409435 CRKP46108 304 aa8.26□□□□□ -1.09
SCN9A-202ENST00000409435 MAP9Q49MG5 647 aa8.26□□□□□ -1.09
SCN9A-202ENST00000409435 FAM160B1Q5W0V3 765 aa8.26□□□□□ -1.09
SCN9A-202ENST00000409435 ZSCAN30Q86W11 494 aa8.26□□□□□ -1.09
SCN9A-202ENST00000409435 NUDT12Q9BQG2 462 aa8.26□□□□□ -1.09
SCN9A-202ENST00000409435 IVLP07476 585 aa8.26□□□□□ -1.09
SCN9A-202ENST00000409435 FILIP1LQ4L180 1135 aa8.26□□□□□ -1.09
SCN9A-202ENST00000409435 MCM3P25205 808 aa8.26□□□□□ -1.09
SCN9A-202ENST00000409435 SUSD4Q5VX71 490 aa8.26□□□□□ -1.09
SCN9A-202ENST00000409435 C1orf228Q6PIY5 440 aa8.26□□□□□ -1.09
SCN9A-202ENST00000409435 RUFY4Q6ZNE9 571 aa8.26□□□□□ -1.09
SCN9A-202ENST00000409435 ARRDC4Q8NCT1 418 aa8.26□□□□□ -1.09
SCN9A-202ENST00000409435 EXOC4Q96A65 974 aa8.26□□□□□ -1.09
SCN9A-202ENST00000409435 CCDC17Q96LX7 622 aa8.26□□□□□ -1.09
SCN9A-202ENST00000409435 PI4KBQ9UBF8 816 aa8.26□□□□□ -1.09
SCN9A-202ENST00000409435 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.26□□□□□ -1.09
SCN9A-202ENST00000409435 PA2G4Q9UQ80 394 aaKnown RBP8.26□□□□□ -1.09
SCN9A-202ENST00000409435 V9GYY5 206 aaPredicted RBP8.26□□□□□ -1.09
SCN9A-202ENST00000409435 PRDM15P57071 1507 aaPredicted RBP8.26□□□□□ -1.09
SCN9A-202ENST00000409435 RPS6KC1Q96S38 1066 aa8.26□□□□□ -1.09
SCN9A-202ENST00000409435 GAS2L1Q99501 681 aaPredicted RBP8.26□□□□□ -1.09
SCN9A-202ENST00000409435 MMP19Q99542 508 aa8.26□□□□□ -1.09
SCN9A-202ENST00000409435 GRPEL1Q9HAV7 217 aa8.26□□□□□ -1.09
SCN9A-202ENST00000409435 LUC7LQ9NQ29 371 aaKnown RBP8.26□□□□□ -1.09
SCN9A-202ENST00000409435 FBXO40Q9UH90 709 aa8.26□□□□□ -1.09
SCN9A-202ENST00000409435 PUF60Q9UHX1 559 aaKnown RBP8.26□□□□□ -1.09
SCN9A-202ENST00000409435 METAP2P50579 478 aaKnown RBP eCLIP8.26□□□□□ -1.09
SCN9A-202ENST00000409435 SLC8A3P57103 927 aa8.26□□□□□ -1.09
SCN9A-202ENST00000409435 HS1BP3Q53T59 392 aa8.26□□□□□ -1.09
SCN9A-202ENST00000409435 MICU3Q86XE3 530 aa8.26□□□□□ -1.09
SCN9A-202ENST00000409435 AXIN2Q9Y2T1 843 aa8.26□□□□□ -1.09
SCN9A-202ENST00000409435 STX6O43752 255 aa8.25□□□□□ -1.09
SCN9A-202ENST00000409435 FCER1AP12319 257 aa8.25□□□□□ -1.09
SCN9A-202ENST00000409435 CYP2B6P20813 491 aa8.25□□□□□ -1.09
SCN9A-202ENST00000409435 ELF1P32519 619 aa8.25□□□□□ -1.09
SCN9A-202ENST00000409435 IGBP1P78318 339 aa8.25□□□□□ -1.09
SCN9A-202ENST00000409435 FILIP1Q7Z7B0 1213 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms