RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 ADCK5Q3MIX3 580 aa21.4■■□□□ 1.02
SDC1-203ENST00000403076 RRP12Q5JTH9 1297 aaKnown RBP21.4■■□□□ 1.02
SDC1-203ENST00000403076 SH3BP5LQ7L8J4 393 aa21.4■■□□□ 1.02
SDC1-203ENST00000403076 SULF1Q8IWU6 871 aa21.4■■□□□ 1.02
SDC1-203ENST00000403076 STAG1Q8WVM7 1258 aa21.4■■□□□ 1.02
SDC1-203ENST00000403076 NMRK2Q9NPI5 230 aa21.4■■□□□ 1.02
SDC1-203ENST00000403076 INCENPQ9NQS7 918 aa21.4■■□□□ 1.02
SDC1-203ENST00000403076 STOX1Q6ZVD7 989 aa21.39■■□□□ 1.02
SDC1-203ENST00000403076 FOXP4Q8IVH2 680 aaPredicted RBP21.39■■□□□ 1.02
SDC1-203ENST00000403076 NCOA7Q8NI08 942 aa21.39■■□□□ 1.02
SDC1-203ENST00000403076 NEK1Q96PY6 1258 aa21.39■■□□□ 1.02
SDC1-203ENST00000403076 CNNM2Q9H8M5 875 aa21.39■■□□□ 1.02
SDC1-203ENST00000403076 MKNK2Q9HBH9 465 aa21.39■■□□□ 1.02
SDC1-203ENST00000403076 ZNF287Q9HBT7 754 aa21.39■■□□□ 1.02
SDC1-203ENST00000403076 SERPINB13Q9UIV8 391 aa21.39■■□□□ 1.02
SDC1-203ENST00000403076 ATRNL1Q5VV63 1379 aa21.39■■□□□ 1.01
SDC1-203ENST00000403076 PRDM1O75626 825 aa21.39■■□□□ 1.01
SDC1-203ENST00000403076 CASTP20810 708 aaKnown RBP21.39■■□□□ 1.01
SDC1-203ENST00000403076 KRT23Q9C075 422 aa21.39■■□□□ 1.01
SDC1-203ENST00000403076 TSHZ2Q9NRE2 1034 aa21.39■■□□□ 1.01
SDC1-203ENST00000403076 COL2A1P02458 1487 aaPredicted RBP21.38■■□□□ 1.01
SDC1-203ENST00000403076 PCP11498 1178 aaKnown RBP21.38■■□□□ 1.01
SDC1-203ENST00000403076 CDK8P49336 464 aa21.38■■□□□ 1.01
SDC1-203ENST00000403076 BLOC1S2Q6QNY1 142 aa21.38■■□□□ 1.01
SDC1-203ENST00000403076 C16orf86Q6ZW13 317 aa21.38■■□□□ 1.01
SDC1-203ENST00000403076 KRT26Q7Z3Y9 468 aa21.38■■□□□ 1.01
SDC1-203ENST00000403076 EHD4Q9H223 541 aa21.38■■□□□ 1.01
SDC1-203ENST00000403076 PPP2R3BQ9Y5P8 575 aa21.38■■□□□ 1.01
SDC1-203ENST00000403076 ROBO3Q96MS0 1386 aa21.37■■□□□ 1.01
SDC1-203ENST00000403076 SLC44A5Q8NCS7 719 aa21.37■■□□□ 1.01
SDC1-203ENST00000403076 KIF2CQ99661 725 aa21.37■■□□□ 1.01
SDC1-203ENST00000403076 TM6SF1Q9BZW5 370 aa21.37■■□□□ 1.01
SDC1-203ENST00000403076 SWAP70Q9UH65 585 aa21.37■■□□□ 1.01
SDC1-203ENST00000403076 CYP46A1Q9Y6A2 500 aa21.37■■□□□ 1.01
SDC1-203ENST00000403076 TACC3Q9Y6A5 838 aa21.37■■□□□ 1.01
SDC1-203ENST00000403076 NEDD4P46934 1319 aa21.37■■□□□ 1.01
SDC1-203ENST00000403076 LAMA4Q16363 1823 aa21.37■■□□□ 1.01
SDC1-203ENST00000403076 DDX60LQ5H9U9 1706 aaKnown RBP21.36■■□□□ 1.01
SDC1-203ENST00000403076 LAMB1P07942 1786 aa21.36■■□□□ 1.01
SDC1-203ENST00000403076 B4E1Z4 1266 aa21.36■■□□□ 1.01
SDC1-203ENST00000403076 RANBP6O60518 1105 aaKnown RBP21.36■■□□□ 1.01
SDC1-203ENST00000403076 RABEP1Q15276 862 aa21.36■■□□□ 1.01
SDC1-203ENST00000403076 CDAN1Q8IWY9 1227 aa21.36■■□□□ 1.01
SDC1-203ENST00000403076 ZNF444Q8N0Y2 327 aaPredicted RBP21.36■■□□□ 1.01
SDC1-203ENST00000403076 UPF3BQ9BZI7 483 aaKnown RBP21.36■■□□□ 1.01
SDC1-203ENST00000403076 PGAP2Q9UHJ9 254 aa21.36■■□□□ 1.01
SDC1-203ENST00000403076 HMGB1P09429 215 aaKnown RBP21.35■■□□□ 1.01
SDC1-203ENST00000403076 PRAMEF18Q5VWM3 479 aa21.35■■□□□ 1.01
SDC1-203ENST00000403076 USP48Q86UV5 1035 aa21.35■■□□□ 1.01
SDC1-203ENST00000403076 ESR2Q92731 530 aa21.35■■□□□ 1.01
SDC1-203ENST00000403076 HOOK2Q96ED9 719 aa21.35■■□□□ 1.01
SDC1-203ENST00000403076 IL17RAQ96F46 866 aa21.35■■□□□ 1.01
SDC1-203ENST00000403076 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.35■■□□□ 1.01
SDC1-203ENST00000403076 HERC5Q9UII4 1024 aaKnown RBP21.35■■□□□ 1.01
SDC1-203ENST00000403076 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.35■■□□□ 1.01
SDC1-203ENST00000403076 FAM196BA6NMK8 535 aa21.34■■□□□ 1.01
SDC1-203ENST00000403076 ADM5C9JUS6 153 aa21.34■■□□□ 1.01
SDC1-203ENST00000403076 ORC4O43929 436 aa21.34■■□□□ 1.01
SDC1-203ENST00000403076 KDM4AO75164 1064 aa21.34■■□□□ 1.01
SDC1-203ENST00000403076 FGRP09769 529 aa21.34■■□□□ 1.01
SDC1-203ENST00000403076 POTEIP0CG38 1075 aa21.34■■□□□ 1.01
SDC1-203ENST00000403076 POTEJP0CG39 1038 aa21.34■■□□□ 1.01
SDC1-203ENST00000403076 CPA1P15085 419 aa21.34■■□□□ 1.01
SDC1-203ENST00000403076 NEK4P51957 841 aa21.34■■□□□ 1.01
SDC1-203ENST00000403076 GABPAQ06546 454 aa21.34■■□□□ 1.01
SDC1-203ENST00000403076 NBPF12Q5TAG4 269 aaPredicted RBP21.34■■□□□ 1.01
SDC1-203ENST00000403076 TEPSINQ96N21 525 aa21.34■■□□□ 1.01
SDC1-203ENST00000403076 GPBP1L1Q9HC44 474 aaPredicted RBP21.34■■□□□ 1.01
SDC1-203ENST00000403076 ZSWIM6Q9HCJ5 1215 aa21.34■■□□□ 1.01
SDC1-203ENST00000403076 SLURP2P0DP57 97 aa21.34■■□□□ 1.01
SDC1-203ENST00000403076 RUFY3Q7L099 469 aa21.34■■□□□ 1.01
SDC1-203ENST00000403076 MIGA2Q7L4E1 593 aa21.34■■□□□ 1.01
SDC1-203ENST00000403076 POLR2AP24928 1970 aaKnown RBP21.33■■□□□ 1.01
SDC1-203ENST00000403076 MCM5P33992 734 aa21.33■■□□□ 1
SDC1-203ENST00000403076 SUPT20HL1Q3ZLR7 823 aa21.33■■□□□ 1
SDC1-203ENST00000403076 CDC37L1Q7L3B6 337 aa21.33■■□□□ 1
SDC1-203ENST00000403076 DHX32Q7L7V1 743 aaKnown RBP21.33■■□□□ 1
SDC1-203ENST00000403076 LDHDQ86WU2 507 aa21.33■■□□□ 1
SDC1-203ENST00000403076 MB21D2Q8IYB1 491 aaPredicted RBP21.33■■□□□ 1
SDC1-203ENST00000403076 TAOK2Q9UL54 1235 aa21.33■■□□□ 1
SDC1-203ENST00000403076 TSPY2A6NKD2 308 aa21.32■■□□□ 1
SDC1-203ENST00000403076 RASA1P20936 1047 aa21.32■■□□□ 1
SDC1-203ENST00000403076 RPS6KB1P23443 525 aa21.32■■□□□ 1
SDC1-203ENST00000403076 FGD1P98174 961 aa21.32■■□□□ 1
SDC1-203ENST00000403076 DCAF15Q66K64 600 aa21.32■■□□□ 1
SDC1-203ENST00000403076 MAP1SQ66K74 1059 aaPredicted RBP21.32■■□□□ 1
SDC1-203ENST00000403076 CHST3Q7LGC8 479 aa21.32■■□□□ 1
SDC1-203ENST00000403076 GLIS2Q9BZE0 524 aaPredicted RBP21.32■■□□□ 1
SDC1-203ENST00000403076 PDRG1Q9NUG6 133 aa21.32■■□□□ 1
SDC1-203ENST00000403076 PRC1O43663 620 aa21.31■■□□□ 1
SDC1-203ENST00000403076 TBC1D12O60347 775 aa21.31■■□□□ 1
SDC1-203ENST00000403076 TSPY3P0CV98 308 aa21.31■■□□□ 1
SDC1-203ENST00000403076 TSPY8P0CW00 308 aa21.31■■□□□ 1
SDC1-203ENST00000403076 SHMT1P34896 483 aa21.31■■□□□ 1
SDC1-203ENST00000403076 TFAP4Q01664 338 aa21.31■■□□□ 1
SDC1-203ENST00000403076 FAM47AQ5JRC9 791 aa21.31■■□□□ 1
SDC1-203ENST00000403076 METTL16Q86W50 562 aaKnown RBP21.31■■□□□ 1
SDC1-203ENST00000403076 TCEANC2Q96MN5 208 aa21.31■■□□□ 1
SDC1-203ENST00000403076 DNAJC18Q9H819 358 aa21.31■■□□□ 1
SDC1-203ENST00000403076 ZSWIM5Q9P217 1185 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms