RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 IL1RAPL2Q9NP60 686 aa16.37■□□□□ 0.21
VCX3A-202ENST00000398729 PICK1Q9NRD5 415 aa16.37■□□□□ 0.21
VCX3A-202ENST00000398729 AATFQ9NY61 560 aaKnown RBP eCLIP16.37■□□□□ 0.21
VCX3A-202ENST00000398729 KCNH4Q9UQ05 1017 aa16.37■□□□□ 0.21
VCX3A-202ENST00000398729 MYO5AQ9Y4I1 1855 aaKnown RBP16.37■□□□□ 0.21
VCX3A-202ENST00000398729 TBC1D12O60347 775 aa16.36■□□□□ 0.21
VCX3A-202ENST00000398729 CTNND1O60716 968 aaKnown RBP16.36■□□□□ 0.21
VCX3A-202ENST00000398729 PPP4CP60510 307 aa16.36■□□□□ 0.21
VCX3A-202ENST00000398729 SIRT2Q8IXJ6 389 aa16.36■□□□□ 0.21
VCX3A-202ENST00000398729 SH3RF3Q8TEJ3 882 aaPredicted RBP16.36■□□□□ 0.21
VCX3A-202ENST00000398729 PIH1D3Q9NQM4 214 aaKnown RBP16.36■□□□□ 0.21
VCX3A-202ENST00000398729 LAMA3Q16787 3333 aa16.36■□□□□ 0.21
VCX3A-202ENST00000398729 APBB1O00213 710 aa16.35■□□□□ 0.21
VCX3A-202ENST00000398729 CXCL11O14625 94 aa16.35■□□□□ 0.21
VCX3A-202ENST00000398729 RAB11FIP3O75154 756 aa16.35■□□□□ 0.21
VCX3A-202ENST00000398729 IDH1O75874 414 aaKnown RBP16.35■□□□□ 0.21
VCX3A-202ENST00000398729 ECM2O94769 699 aaPredicted RBP16.35■□□□□ 0.21
VCX3A-202ENST00000398729 GNRH1P01148 92 aa16.35■□□□□ 0.21
VCX3A-202ENST00000398729 C20orf194Q5TEA3 1177 aa16.35■□□□□ 0.21
VCX3A-202ENST00000398729 CHRDL2Q6WN34 429 aa16.35■□□□□ 0.21
VCX3A-202ENST00000398729 ANKRD23Q86SG2 305 aa16.35■□□□□ 0.21
VCX3A-202ENST00000398729 TRIM47Q96LD4 638 aa16.35■□□□□ 0.21
VCX3A-202ENST00000398729 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.35■□□□□ 0.21
VCX3A-202ENST00000398729 ZHX2Q9Y6X8 837 aa16.35■□□□□ 0.21
VCX3A-202ENST00000398729 DOCK1Q14185 1865 aa16.35■□□□□ 0.21
VCX3A-202ENST00000398729 COL6A3P12111 3177 aa16.34■□□□□ 0.21
VCX3A-202ENST00000398729 SLURP2P0DP57 97 aa16.34■□□□□ 0.21
VCX3A-202ENST00000398729 PTPRAP18433 802 aa16.34■□□□□ 0.21
VCX3A-202ENST00000398729 CYP7A1P22680 504 aa16.34■□□□□ 0.21
VCX3A-202ENST00000398729 MOGSQ13724 837 aa16.34■□□□□ 0.21
VCX3A-202ENST00000398729 KIF22Q14807 665 aa16.34■□□□□ 0.21
VCX3A-202ENST00000398729 UBE2Q1Q7Z7E8 422 aa16.34■□□□□ 0.21
VCX3A-202ENST00000398729 ADGRA1Q86SQ6 560 aa16.34■□□□□ 0.21
VCX3A-202ENST00000398729 DHX36Q9H2U1 1008 aaKnown RBP16.34■□□□□ 0.21
VCX3A-202ENST00000398729 RBM27Q9P2N5 1060 aaKnown RBP16.34■□□□□ 0.21
VCX3A-202ENST00000398729 SRRDQ9UH36 339 aa16.34■□□□□ 0.21
VCX3A-202ENST00000398729 CPA4Q9UI42 421 aa16.34■□□□□ 0.21
VCX3A-202ENST00000398729 PDHXO00330 501 aa16.33■□□□□ 0.2
VCX3A-202ENST00000398729 IFIT2P09913 472 aaKnown RBP16.33■□□□□ 0.2
VCX3A-202ENST00000398729 PSMC4P43686 418 aa16.33■□□□□ 0.2
VCX3A-202ENST00000398729 PRMT2P55345 433 aa16.33■□□□□ 0.2
VCX3A-202ENST00000398729 MAP3K12Q12852 859 aa16.33■□□□□ 0.2
VCX3A-202ENST00000398729 TMED8Q6PL24 325 aaPredicted RBP16.33■□□□□ 0.2
VCX3A-202ENST00000398729 CERS3Q8IU89 383 aa16.33■□□□□ 0.2
VCX3A-202ENST00000398729 TGFBRAP1Q8WUH2 860 aa16.33■□□□□ 0.2
VCX3A-202ENST00000398729 PI4KBQ9UBF8 816 aa16.33■□□□□ 0.2
VCX3A-202ENST00000398729 HERC5Q9UII4 1024 aaKnown RBP16.33■□□□□ 0.2
VCX3A-202ENST00000398729 NDUFB9Q9Y6M9 179 aa16.33■□□□□ 0.2
VCX3A-202ENST00000398729 FAM196BA6NMK8 535 aa16.32■□□□□ 0.2
VCX3A-202ENST00000398729 OSBPP22059 807 aa16.32■□□□□ 0.2
VCX3A-202ENST00000398729 TTF1Q15361 905 aaPredicted RBP16.32■□□□□ 0.2
VCX3A-202ENST00000398729 FASTKD5Q7L8L6 764 aaKnown RBP16.32■□□□□ 0.2
VCX3A-202ENST00000398729 MAGEB6Q8N7X4 407 aa16.32■□□□□ 0.2
VCX3A-202ENST00000398729 DPF3Q92784 378 aa16.32■□□□□ 0.2
VCX3A-202ENST00000398729 ADGRA2Q96PE1 1338 aa16.32■□□□□ 0.2
VCX3A-202ENST00000398729 BCL11AQ9H165 835 aa16.32■□□□□ 0.2
VCX3A-202ENST00000398729 PRO3102Q9H379 93 aa16.32■□□□□ 0.2
VCX3A-202ENST00000398729 ANTXR1Q9H6X2 564 aa16.32■□□□□ 0.2
VCX3A-202ENST00000398729 AFG3L2Q9Y4W6 797 aa16.32■□□□□ 0.2
VCX3A-202ENST00000398729 CUL9Q8IWT3 2517 aa16.32■□□□□ 0.2
VCX3A-202ENST00000398729 CDK5RAP2Q96SN8 1893 aa16.31■□□□□ 0.2
VCX3A-202ENST00000398729 FOCADQ5VW36 1801 aa16.31■□□□□ 0.2
VCX3A-202ENST00000398729 FLT1P17948 1338 aa16.31■□□□□ 0.2
VCX3A-202ENST00000398729 A0A0G2JLL6 359 aaPredicted RBP16.31■□□□□ 0.2
VCX3A-202ENST00000398729 PRRT2Q7Z6L0 340 aaPredicted RBP16.31■□□□□ 0.2
VCX3A-202ENST00000398729 MAPKAPK5Q8IW41 473 aa16.31■□□□□ 0.2
VCX3A-202ENST00000398729 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.31■□□□□ 0.2
VCX3A-202ENST00000398729 GRK4P32298 578 aa16.3■□□□□ 0.2
VCX3A-202ENST00000398729 GJA8P48165 433 aa16.3■□□□□ 0.2
VCX3A-202ENST00000398729 DYNLL1P63167 89 aaKnown RBP16.3■□□□□ 0.2
VCX3A-202ENST00000398729 GPAT2Q6NUI2 795 aa16.3■□□□□ 0.2
VCX3A-202ENST00000398729 MIGA1Q8NAN2 632 aa16.3■□□□□ 0.2
VCX3A-202ENST00000398729 PARK7Q99497 189 aaKnown RBP16.3■□□□□ 0.2
VCX3A-202ENST00000398729 TRIM34Q9BYJ4 488 aa16.3■□□□□ 0.2
VCX3A-202ENST00000398729 PHIPQ8WWQ0 1821 aa16.29■□□□□ 0.2
VCX3A-202ENST00000398729 ATAD5Q96QE3 1844 aa16.29■□□□□ 0.2
VCX3A-202ENST00000398729 TRIM75PA6NK02 468 aa16.29■□□□□ 0.2
VCX3A-202ENST00000398729 HLA-DOAP06340 250 aa16.29■□□□□ 0.2
VCX3A-202ENST00000398729 GJB1P08034 283 aa16.29■□□□□ 0.2
VCX3A-202ENST00000398729 CCL5P13501 91 aa16.29■□□□□ 0.2
VCX3A-202ENST00000398729 CAP2P40123 477 aa16.29■□□□□ 0.2
VCX3A-202ENST00000398729 GADL1Q6ZQY3 521 aa16.29■□□□□ 0.2
VCX3A-202ENST00000398729 FOXP4Q8IVH2 680 aaPredicted RBP16.29■□□□□ 0.2
VCX3A-202ENST00000398729 CRACR2BQ8N4Y2 399 aaPredicted RBP16.29■□□□□ 0.2
VCX3A-202ENST00000398729 TBC1D2Q9BYX2 928 aa16.29■□□□□ 0.2
VCX3A-202ENST00000398729 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.29■□□□□ 0.2
VCX3A-202ENST00000398729 PALD1Q9ULE6 856 aa16.29■□□□□ 0.2
VCX3A-202ENST00000398729 PTPRFP10586 1907 aa16.29■□□□□ 0.2
VCX3A-202ENST00000398729 FMNL1O95466 1100 aaPredicted RBP16.28■□□□□ 0.2
VCX3A-202ENST00000398729 USP5P45974 858 aa16.28■□□□□ 0.2
VCX3A-202ENST00000398729 CCDC84Q86UT8 332 aaPredicted RBP16.28■□□□□ 0.2
VCX3A-202ENST00000398729 RAET1EQ8TD07 263 aa16.28■□□□□ 0.2
VCX3A-202ENST00000398729 DNAJC2Q99543 621 aaKnown RBP16.28■□□□□ 0.2
VCX3A-202ENST00000398729 LRRCC1Q9C099 1032 aa16.28■□□□□ 0.2
VCX3A-202ENST00000398729 SAP30BPQ9UHR5 308 aaKnown RBP16.28■□□□□ 0.2
VCX3A-202ENST00000398729 SLC45A1Q9Y2W3 748 aa16.28■□□□□ 0.2
VCX3A-202ENST00000398729 SIPA1L1O43166 1804 aa16.27■□□□□ 0.2
VCX3A-202ENST00000398729 USP17L5A8MUK1 530 aa16.27■□□□□ 0.2
VCX3A-202ENST00000398729 GOLIM4O00461 696 aa16.27■□□□□ 0.2
VCX3A-202ENST00000398729 BCRP11274 1271 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms