RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 COG6Q9Y2V7 657 aa12.7□□□□□ -0.38
NEDD8-202ENST00000396828 LAMA3Q16787 3333 aa12.7□□□□□ -0.38
NEDD8-202ENST00000396828 SIPA1L1O43166 1804 aa12.69□□□□□ -0.38
NEDD8-202ENST00000396828 DOCK3Q8IZD9 2030 aa12.69□□□□□ -0.38
NEDD8-202ENST00000396828 RLBP1P12271 317 aa12.69□□□□□ -0.38
NEDD8-202ENST00000396828 PRMT2P55345 433 aa12.69□□□□□ -0.38
NEDD8-202ENST00000396828 JAG1P78504 1218 aa12.69□□□□□ -0.38
NEDD8-202ENST00000396828 G3BP1Q13283 466 aaKnown RBP eCLIP12.69□□□□□ -0.38
NEDD8-202ENST00000396828 AAMPQ13685 434 aa12.69□□□□□ -0.38
NEDD8-202ENST00000396828 POLA2Q14181 598 aa12.69□□□□□ -0.38
NEDD8-202ENST00000396828 GORABQ5T7V8 394 aa12.69□□□□□ -0.38
NEDD8-202ENST00000396828 FASTKD5Q7L8L6 764 aaKnown RBP12.69□□□□□ -0.38
NEDD8-202ENST00000396828 ADGRA1Q86SQ6 560 aa12.69□□□□□ -0.38
NEDD8-202ENST00000396828 SLF2Q8IX21 1173 aa12.69□□□□□ -0.38
NEDD8-202ENST00000396828 EXOC6Q8TAG9 804 aa12.69□□□□□ -0.38
NEDD8-202ENST00000396828 RAET1EQ8TD07 263 aa12.69□□□□□ -0.38
NEDD8-202ENST00000396828 SH3RF3Q8TEJ3 882 aaPredicted RBP12.69□□□□□ -0.38
NEDD8-202ENST00000396828 RAI14Q9P0K7 980 aa12.69□□□□□ -0.38
NEDD8-202ENST00000396828 PCDH10Q9P2E7 1040 aa12.69□□□□□ -0.38
NEDD8-202ENST00000396828 DDX19BQ9UMR2 479 aa12.69□□□□□ -0.38
NEDD8-202ENST00000396828 COLQQ9Y215 455 aaPredicted RBP12.69□□□□□ -0.38
NEDD8-202ENST00000396828 ATAD5Q96QE3 1844 aa12.69□□□□□ -0.38
NEDD8-202ENST00000396828 H0YGN5 161 aa12.68□□□□□ -0.38
NEDD8-202ENST00000396828 TBC1D12O60347 775 aa12.68□□□□□ -0.38
NEDD8-202ENST00000396828 CCL5P13501 91 aa12.68□□□□□ -0.38
NEDD8-202ENST00000396828 SHROOM1Q2M3G4 852 aaPredicted RBP12.68□□□□□ -0.38
NEDD8-202ENST00000396828 DBNDD2Q9BQY9 259 aa12.68□□□□□ -0.38
NEDD8-202ENST00000396828 OSBPL5Q9H0X9 879 aaPredicted RBP12.68□□□□□ -0.38
NEDD8-202ENST00000396828 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.68□□□□□ -0.38
NEDD8-202ENST00000396828 CDK5RAP2Q96SN8 1893 aa12.68□□□□□ -0.38
NEDD8-202ENST00000396828 CYP2E1P05181 493 aaPredicted RBP12.67□□□□□ -0.38
NEDD8-202ENST00000396828 ELNP15502 786 aa12.67□□□□□ -0.38
NEDD8-202ENST00000396828 HOXD10P28358 340 aa12.67□□□□□ -0.38
NEDD8-202ENST00000396828 FLT3LGP49771 235 aa12.67□□□□□ -0.38
NEDD8-202ENST00000396828 FCGRTP55899 365 aa12.67□□□□□ -0.38
NEDD8-202ENST00000396828 SPP2Q13103 211 aa12.67□□□□□ -0.38
NEDD8-202ENST00000396828 UBE2Q1Q7Z7E8 422 aa12.67□□□□□ -0.38
NEDD8-202ENST00000396828 GCC1Q96CN9 775 aa12.67□□□□□ -0.38
NEDD8-202ENST00000396828 UNC93B1Q9H1C4 597 aa12.67□□□□□ -0.38
NEDD8-202ENST00000396828 PPP4R2Q9NY27 417 aa12.67□□□□□ -0.38
NEDD8-202ENST00000396828 AATFQ9NY61 560 aaKnown RBP eCLIP12.67□□□□□ -0.38
NEDD8-202ENST00000396828 TLR7Q9NYK1 1049 aaKnown RBP12.67□□□□□ -0.38
NEDD8-202ENST00000396828 TRIOBPQ9H2D6 2365 aa12.66□□□□□ -0.38
NEDD8-202ENST00000396828 PEX10O60683 326 aa12.66□□□□□ -0.38
NEDD8-202ENST00000396828 LDHCP07864 332 aa12.66□□□□□ -0.38
NEDD8-202ENST00000396828 GJA8P48165 433 aa12.66□□□□□ -0.38
NEDD8-202ENST00000396828 FXR1P51114 621 aaKnown RBP eCLIP12.66□□□□□ -0.38
NEDD8-202ENST00000396828 ATP8B2P98198 1209 aa12.66□□□□□ -0.38
NEDD8-202ENST00000396828 TNNI3KQ59H18 835 aa12.66□□□□□ -0.38
NEDD8-202ENST00000396828 TEX11Q8IYF3 940 aa12.66□□□□□ -0.38
NEDD8-202ENST00000396828 ANKRD13CQ8N6S4 541 aa12.66□□□□□ -0.38
NEDD8-202ENST00000396828 SSH3Q8TE77 659 aa12.66□□□□□ -0.38
NEDD8-202ENST00000396828 RNF208Q9H0X6 261 aa12.66□□□□□ -0.38
NEDD8-202ENST00000396828 DNAJC18Q9H819 358 aa12.66□□□□□ -0.38
NEDD8-202ENST00000396828 LRP2BPQ9P2M1 347 aa12.66□□□□□ -0.38
NEDD8-202ENST00000396828 BIN2Q9UBW5 565 aaPredicted RBP12.66□□□□□ -0.38
NEDD8-202ENST00000396828 AGTPBP1Q9UPW5 1226 aa12.66□□□□□ -0.38
NEDD8-202ENST00000396828 SLC45A1Q9Y2W3 748 aa12.66□□□□□ -0.38
NEDD8-202ENST00000396828 FPGT-TNNI3KV9GXZ4 949 aa12.66□□□□□ -0.38
NEDD8-202ENST00000396828 DNAH12Q6ZR08 3092 aa12.66□□□□□ -0.38
NEDD8-202ENST00000396828 LOC285556D6RIA3 1793 aa12.66□□□□□ -0.38
NEDD8-202ENST00000396828 ADCY3O60266 1144 aa12.65□□□□□ -0.38
NEDD8-202ENST00000396828 GJB1P08034 283 aa12.65□□□□□ -0.38
NEDD8-202ENST00000396828 CAP2P40123 477 aa12.65□□□□□ -0.38
NEDD8-202ENST00000396828 HMGCS2P54868 508 aa12.65□□□□□ -0.38
NEDD8-202ENST00000396828 GSTO1P78417 241 aa12.65□□□□□ -0.38
NEDD8-202ENST00000396828 ZNF280CQ8ND82 737 aa12.65□□□□□ -0.38
NEDD8-202ENST00000396828 SMCR8Q8TEV9 937 aaPredicted RBP12.65□□□□□ -0.38
NEDD8-202ENST00000396828 PIH1D3Q9NQM4 214 aaKnown RBP12.65□□□□□ -0.38
NEDD8-202ENST00000396828 NDUFB9Q9Y6M9 179 aa12.65□□□□□ -0.38
NEDD8-202ENST00000396828 COL2A1P02458 1487 aaPredicted RBP12.65□□□□□ -0.38
NEDD8-202ENST00000396828 MAST2Q6P0Q8 1798 aa12.64□□□□□ -0.39
NEDD8-202ENST00000396828 TNPO2O14787 897 aaKnown RBP12.64□□□□□ -0.39
NEDD8-202ENST00000396828 ZBTB7BO15156 539 aaPredicted RBP12.64□□□□□ -0.39
NEDD8-202ENST00000396828 SURF6O75683 361 aaKnown RBP12.64□□□□□ -0.39
NEDD8-202ENST00000396828 INHAP05111 366 aa12.64□□□□□ -0.39
NEDD8-202ENST00000396828 UQCRFS1P1P0C7P4 283 aa12.64□□□□□ -0.39
NEDD8-202ENST00000396828 ZAP70P43403 619 aa12.64□□□□□ -0.39
NEDD8-202ENST00000396828 DYNLL1P63167 89 aaKnown RBP12.64□□□□□ -0.39
NEDD8-202ENST00000396828 TTC39AQ5SRH9 613 aa12.64□□□□□ -0.39
NEDD8-202ENST00000396828 NAA16Q6N069 864 aaPredicted RBP12.64□□□□□ -0.39
NEDD8-202ENST00000396828 MAPKAPK5Q8IW41 473 aa12.64□□□□□ -0.39
NEDD8-202ENST00000396828 SLAIN1Q8ND83 568 aa12.64□□□□□ -0.39
NEDD8-202ENST00000396828 U2AF1L4Q8WU68 220 aaKnown RBP12.64□□□□□ -0.39
NEDD8-202ENST00000396828 TGFBRAP1Q8WUH2 860 aa12.64□□□□□ -0.39
NEDD8-202ENST00000396828 EAF2Q96CJ1 260 aaPredicted RBP12.64□□□□□ -0.39
NEDD8-202ENST00000396828 CCDC8Q9H0W5 538 aaPredicted RBP12.64□□□□□ -0.39
NEDD8-202ENST00000396828 GPR108Q9NPR9 543 aa12.64□□□□□ -0.39
NEDD8-202ENST00000396828 DBNLQ9UJU6 430 aaKnown RBP12.64□□□□□ -0.39
NEDD8-202ENST00000396828 FOCADQ5VW36 1801 aa12.64□□□□□ -0.39
NEDD8-202ENST00000396828 PPP4CP60510 307 aa12.63□□□□□ -0.39
NEDD8-202ENST00000396828 DPF3Q92784 378 aa12.63□□□□□ -0.39
NEDD8-202ENST00000396828 CCDC136Q96JN2 1154 aa12.63□□□□□ -0.39
NEDD8-202ENST00000396828 ASCC2Q9H1I8 757 aaPredicted RBP12.63□□□□□ -0.39
NEDD8-202ENST00000396828 TAOK2Q9UL54 1235 aa12.63□□□□□ -0.39
NEDD8-202ENST00000396828 PALD1Q9ULE6 856 aa12.63□□□□□ -0.39
NEDD8-202ENST00000396828 FLT1P17948 1338 aa12.62□□□□□ -0.39
NEDD8-202ENST00000396828 PLXNB2O15031 1838 aa12.62□□□□□ -0.39
NEDD8-202ENST00000396828 COL6A3P12111 3177 aa12.62□□□□□ -0.39
NEDD8-202ENST00000396828 USP17L5A8MUK1 530 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms