RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 ECE1P42892 770 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 USP5P45974 858 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 IL9RQ01113 521 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 TEX11Q8IYF3 940 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 LEO1Q8WVC0 666 aaPredicted RBP9.67□□□□□ -0.86
LIG3-202ENST00000378526 TFIP11Q9UBB9 837 aaKnown RBP9.67□□□□□ -0.86
LIG3-202ENST00000378526 TSPY2A6NKD2 308 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 TSPY3P0CV98 308 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 TSPY8P0CW00 308 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 TSPY1Q01534 308 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 E2F5Q15329 346 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 USP48Q86UV5 1035 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 TUBGCP3Q96CW5 907 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 RUNDC3BQ96NL0 473 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 ZNF229Q9UJW7 825 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 MMEP08473 750 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 DDIT3P35638 169 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 FAM133BQ5BKY9 247 aaKnown RBP9.66□□□□□ -0.86
LIG3-202ENST00000378526 RNF207Q6ZRF8 634 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 HAUS7Q99871 368 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 IFNKQ9P0W0 207 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 TMEM110-MUSTN1A8MSY1 372 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 AEBP2Q6ZN18 517 aaPredicted RBP9.66□□□□□ -0.86
LIG3-202ENST00000378526 TMTC1Q8IUR5 882 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 ARHGAP26Q9UNA1 814 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 DHX57Q6P158 1386 aaKnown RBP9.66□□□□□ -0.86
LIG3-202ENST00000378526 PRDM1O75626 825 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 FMNL1O95466 1100 aaPredicted RBP9.66□□□□□ -0.86
LIG3-202ENST00000378526 SERPINB2P05120 415 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 SESTD1Q86VW0 696 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 NECAB1Q8N987 351 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 SH3GL1Q99961 368 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 CARD6Q9BX69 1037 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 HELLSQ9NRZ9 838 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 TLK1Q9UKI8 766 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 MAFGO15525 162 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 NBNO60934 754 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 LRRC8CQ8TDW0 803 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 ADCY3O60266 1144 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 DKC1O60832 514 aaKnown RBP eCLIP9.66□□□□□ -0.86
LIG3-202ENST00000378526 PSMC1P62191 440 aaKnown RBP9.66□□□□□ -0.86
LIG3-202ENST00000378526 ZNF354CQ86Y25 554 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.66□□□□□ -0.86
LIG3-202ENST00000378526 EVI5LQ96CN4 794 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 SYCE1LA8MT33 242 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 CA8P35219 290 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 CASP10Q92851 521 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 UBAP1Q9NZ09 502 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 ATP11BQ9Y2G3 1177 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 AFG3L2Q9Y4W6 797 aa9.66□□□□□ -0.86
LIG3-202ENST00000378526 GRIN1Q05586 938 aa9.65□□□□□ -0.86
LIG3-202ENST00000378526 TWISTNBQ3B726 338 aaPredicted RBP9.65□□□□□ -0.86
LIG3-202ENST00000378526 PYGBP11216 843 aa9.65□□□□□ -0.86
LIG3-202ENST00000378526 KRT2P35908 639 aa9.65□□□□□ -0.86
LIG3-202ENST00000378526 EVA1CP58658 441 aa9.65□□□□□ -0.86
LIG3-202ENST00000378526 JADE1Q6IE81 842 aa9.65□□□□□ -0.86
LIG3-202ENST00000378526 SMC5Q8IY18 1101 aa9.65□□□□□ -0.86
LIG3-202ENST00000378526 USP33Q8TEY7 942 aa9.65□□□□□ -0.86
LIG3-202ENST00000378526 DNAJC25Q9H1X3 360 aa9.65□□□□□ -0.86
LIG3-202ENST00000378526 MRPL40Q9NQ50 206 aaKnown RBP9.65□□□□□ -0.86
LIG3-202ENST00000378526 ZNF513Q8N8E2 541 aaPredicted RBP9.65□□□□□ -0.86
LIG3-202ENST00000378526 KLHL29Q96CT2 875 aa9.65□□□□□ -0.86
LIG3-202ENST00000378526 STOML1Q9UBI4 398 aa9.65□□□□□ -0.86
LIG3-202ENST00000378526 AK9Q5TCS8 1911 aa9.65□□□□□ -0.86
LIG3-202ENST00000378526 TBC1D8O95759 1140 aa9.65□□□□□ -0.86
LIG3-202ENST00000378526 LMOD1P29536 600 aaPredicted RBP9.65□□□□□ -0.86
LIG3-202ENST00000378526 SECISBP2LQ93073 1101 aaKnown RBP9.65□□□□□ -0.86
LIG3-202ENST00000378526 CXorf56Q9H5V9 222 aa9.65□□□□□ -0.86
LIG3-202ENST00000378526 TRPA1O75762 1119 aa9.65□□□□□ -0.87
LIG3-202ENST00000378526 FCHSD1Q86WN1 690 aa9.65□□□□□ -0.87
LIG3-202ENST00000378526 CCDC13Q8IYE1 715 aa9.65□□□□□ -0.87
LIG3-202ENST00000378526 EIF4G1Q04637 1599 aaKnown RBP9.65□□□□□ -0.87
LIG3-202ENST00000378526 STXBP3O00186 592 aa9.65□□□□□ -0.87
LIG3-202ENST00000378526 GOLGA8FQ08AF8 430 aa9.65□□□□□ -0.87
LIG3-202ENST00000378526 GOLGA8DPQ0D2H9 430 aa9.65□□□□□ -0.87
LIG3-202ENST00000378526 GRK7Q8WTQ7 553 aa9.65□□□□□ -0.87
LIG3-202ENST00000378526 KIFC2Q96AC6 838 aa9.65□□□□□ -0.87
LIG3-202ENST00000378526 YIPF3Q9GZM5 350 aa9.65□□□□□ -0.87
LIG3-202ENST00000378526 TSPAN9O75954 239 aa9.64□□□□□ -0.87
LIG3-202ENST00000378526 CYLC2Q14093 348 aaPredicted RBP9.64□□□□□ -0.87
LIG3-202ENST00000378526 BMP2KLQ5H9B9 411 aa9.64□□□□□ -0.87
LIG3-202ENST00000378526 AMOTL2Q9Y2J4 779 aa9.64□□□□□ -0.87
LIG3-202ENST00000378526 ZBBXA8MT70 800 aa9.64□□□□□ -0.87
LIG3-202ENST00000378526 HGSO14964 777 aaPredicted RBP9.64□□□□□ -0.87
LIG3-202ENST00000378526 DEFA1P59665 94 aa9.64□□□□□ -0.87
LIG3-202ENST00000378526 DEFA3P59666 94 aa9.64□□□□□ -0.87
LIG3-202ENST00000378526 MCM10Q7L590 875 aa9.64□□□□□ -0.87
LIG3-202ENST00000378526 CAB39Q9Y376 341 aaPredicted RBP9.64□□□□□ -0.87
LIG3-202ENST00000378526 GNGT2O14610 69 aa9.64□□□□□ -0.87
LIG3-202ENST00000378526 CAPN1P07384 714 aa9.64□□□□□ -0.87
LIG3-202ENST00000378526 SNX1Q13596 522 aa9.64□□□□□ -0.87
LIG3-202ENST00000378526 RAB3GAP1Q15042 981 aa9.64□□□□□ -0.87
LIG3-202ENST00000378526 OSBPL9Q96SU4 736 aa9.64□□□□□ -0.87
LIG3-202ENST00000378526 ANKRD2Q9GZV1 360 aa9.64□□□□□ -0.87
LIG3-202ENST00000378526 ASIC3Q9UHC3 531 aa9.64□□□□□ -0.87
LIG3-202ENST00000378526 SAR1BQ9Y6B6 198 aa9.64□□□□□ -0.87
LIG3-202ENST00000378526 GON4LQ3T8J9 2241 aa9.64□□□□□ -0.87
LIG3-202ENST00000378526 GNPTABQ3T906 1256 aa9.64□□□□□ -0.87
LIG3-202ENST00000378526 CATSPER1Q8NEC5 780 aa9.64□□□□□ -0.87
LIG3-202ENST00000378526 ZCRB1Q8TBF4 217 aaKnown RBP9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms