RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 NXNQ6DKJ4 435 aa11.79□□□□□ -0.52
RTN3-206ENST00000377819 TTC6Q86TZ1 520 aa11.79□□□□□ -0.52
RTN3-206ENST00000377819 SETDB2Q96T68 719 aa11.79□□□□□ -0.52
RTN3-206ENST00000377819 DRC3Q9H069 523 aa11.79□□□□□ -0.52
RTN3-206ENST00000377819 ITSN2Q9NZM3 1697 aa11.79□□□□□ -0.52
RTN3-206ENST00000377819 EPRSP07814 1512 aaKnown RBP11.79□□□□□ -0.52
RTN3-206ENST00000377819 P4HA1P13674 534 aa11.78□□□□□ -0.52
RTN3-206ENST00000377819 IL1RL1Q01638 556 aa11.78□□□□□ -0.52
RTN3-206ENST00000377819 BBS5Q8N3I7 341 aa11.78□□□□□ -0.52
RTN3-206ENST00000377819 ATP6V0A1Q93050 837 aa11.78□□□□□ -0.52
RTN3-206ENST00000377819 TEKT1Q969V4 418 aa11.78□□□□□ -0.52
RTN3-206ENST00000377819 NUCKS1Q9H1E3 243 aaKnown RBP11.78□□□□□ -0.52
RTN3-206ENST00000377819 THEGQ9P2T0 379 aa11.78□□□□□ -0.52
RTN3-206ENST00000377819 ORC6Q9Y5N6 252 aa11.78□□□□□ -0.52
RTN3-206ENST00000377819 SLC4A4Q9Y6R1 1079 aa11.78□□□□□ -0.52
RTN3-206ENST00000377819 PREX2Q70Z35 1606 aa11.78□□□□□ -0.52
RTN3-206ENST00000377819 ATP5J2-PTCD1G3V325 749 aa11.78□□□□□ -0.52
RTN3-206ENST00000377819 OPHN1O60890 802 aa11.78□□□□□ -0.52
RTN3-206ENST00000377819 TBC1D8BQ0IIM8 1120 aa11.78□□□□□ -0.52
RTN3-206ENST00000377819 PPFIA1Q13136 1202 aa11.78□□□□□ -0.52
RTN3-206ENST00000377819 RASIP1Q5U651 963 aa11.78□□□□□ -0.52
RTN3-206ENST00000377819 RSBN1LQ6PCB5 846 aaPredicted RBP11.78□□□□□ -0.52
RTN3-206ENST00000377819 CCDC61Q9Y6R9 512 aa11.78□□□□□ -0.52
RTN3-206ENST00000377819 ZNF804AQ7Z570 1209 aa11.78□□□□□ -0.52
RTN3-206ENST00000377819 TRIM56Q9BRZ2 755 aaKnown RBP11.78□□□□□ -0.52
RTN3-206ENST00000377819 ZSCAN32Q9NX65 697 aa11.78□□□□□ -0.52
RTN3-206ENST00000377819 CTTNBP2NLQ9P2B4 639 aa11.78□□□□□ -0.52
RTN3-206ENST00000377819 MAST1Q9Y2H9 1570 aa11.78□□□□□ -0.52
RTN3-206ENST00000377819 ATICP31939 592 aa11.78□□□□□ -0.52
RTN3-206ENST00000377819 ESRRGP62508 458 aa11.78□□□□□ -0.52
RTN3-206ENST00000377819 PICK1Q9NRD5 415 aa11.78□□□□□ -0.52
RTN3-206ENST00000377819 OCM2P0CE71 109 aa11.77□□□□□ -0.52
RTN3-206ENST00000377819 OCMP0CE72 109 aaPredicted RBP11.77□□□□□ -0.52
RTN3-206ENST00000377819 HSPA8P11142 646 aaKnown RBP11.77□□□□□ -0.52
RTN3-206ENST00000377819 YWHAEP62258 255 aaKnown RBP11.77□□□□□ -0.52
RTN3-206ENST00000377819 SV2BQ7L1I2 683 aa11.77□□□□□ -0.52
RTN3-206ENST00000377819 FNBP4Q8N3X1 1017 aaPredicted RBP11.77□□□□□ -0.52
RTN3-206ENST00000377819 AFAP1L1Q8TED9 768 aa11.77□□□□□ -0.52
RTN3-206ENST00000377819 SUCLA2Q9P2R7 463 aaPredicted RBP11.77□□□□□ -0.52
RTN3-206ENST00000377819 TPCN1Q9ULQ1 816 aa11.77□□□□□ -0.52
RTN3-206ENST00000377819 GOLGA8QA0A0J9YX86 632 aa11.77□□□□□ -0.53
RTN3-206ENST00000377819 GTPBP10A4D1E9 387 aaKnown RBP11.77□□□□□ -0.53
RTN3-206ENST00000377819 GOLGA8OA6NCC3 632 aa11.77□□□□□ -0.53
RTN3-206ENST00000377819 GOLGA8NF8WBI6 632 aa11.77□□□□□ -0.53
RTN3-206ENST00000377819 IFT20Q8IY31 132 aa11.77□□□□□ -0.53
RTN3-206ENST00000377819 HAUS1Q96CS2 278 aa11.77□□□□□ -0.53
RTN3-206ENST00000377819 HOOK2Q96ED9 719 aa11.77□□□□□ -0.53
RTN3-206ENST00000377819 ANO3Q9BYT9 981 aa11.77□□□□□ -0.53
RTN3-206ENST00000377819 LARSQ9P2J5 1176 aaKnown RBP11.77□□□□□ -0.53
RTN3-206ENST00000377819 FAM95CA0A1B0GW59 222 aa11.77□□□□□ -0.53
RTN3-206ENST00000377819 ABL1P00519 1130 aa11.77□□□□□ -0.53
RTN3-206ENST00000377819 KRT10P13645 584 aa11.77□□□□□ -0.53
RTN3-206ENST00000377819 KARSQ15046 597 aaKnown RBP11.77□□□□□ -0.53
RTN3-206ENST00000377819 IQCB1Q15051 598 aa11.77□□□□□ -0.53
RTN3-206ENST00000377819 MYLK4Q86YV6 388 aaPredicted RBP11.77□□□□□ -0.53
RTN3-206ENST00000377819 IPO11Q9UI26 975 aaKnown RBP11.77□□□□□ -0.53
RTN3-206ENST00000377819 MAPKBP1O60336 1514 aa11.77□□□□□ -0.53
RTN3-206ENST00000377819 E9PMD0 336 aa11.77□□□□□ -0.53
RTN3-206ENST00000377819 CAPN9O14815 690 aa11.77□□□□□ -0.53
RTN3-206ENST00000377819 PPFIA3O75145 1194 aa11.77□□□□□ -0.53
RTN3-206ENST00000377819 NOLC1Q14978 699 aaKnown RBP eCLIP11.77□□□□□ -0.535e-6■□□□□ 9.2
RTN3-206ENST00000377819 MUM1Q2TAK8 710 aa11.77□□□□□ -0.53
RTN3-206ENST00000377819 MMEL1Q495T6 779 aa11.77□□□□□ -0.53
RTN3-206ENST00000377819 ATP6V1E2Q96A05 226 aa11.77□□□□□ -0.53
RTN3-206ENST00000377819 BAIAP2L1Q9UHR4 511 aa11.77□□□□□ -0.53
RTN3-206ENST00000377819 DHX29Q7Z478 1369 aaKnown RBP11.77□□□□□ -0.53
RTN3-206ENST00000377819 TYW5A2RUC4 315 aaKnown RBP11.76□□□□□ -0.53
RTN3-206ENST00000377819 ARHGEF35A5YM69 484 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 GNGT2O14610 69 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 S100BP04271 92 aaPredicted RBP11.76□□□□□ -0.53
RTN3-206ENST00000377819 SSFA2P28290 1259 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 STX17P56962 302 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 PPP2R3AQ06190 1150 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 HAUS3Q68CZ6 603 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 AOPEPQ8N6M6 819 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 GLT8D2Q9H1C3 349 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 RIC8AQ9NPQ8 531 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 PPP1R9AQ9ULJ8 1098 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 ERCC6L2Q5T890 1561 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 SPTLC2O15270 562 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 EFCAB14O75071 495 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 MARCKSP29966 332 aaPredicted RBP11.76□□□□□ -0.53
RTN3-206ENST00000377819 EVCP57679 992 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 GIMAP6Q6P9H5 292 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 CCDC105Q8IYK2 499 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 LRGUKQ96M69 825 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 EFCC1Q9HA90 598 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 DDX21Q9NR30 783 aaKnown RBP eCLIP11.76□□□□□ -0.53
RTN3-206ENST00000377819 SLC52A1Q9NWF4 448 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 SMARCA5O60264 1052 aaPredicted RBP11.76□□□□□ -0.53
RTN3-206ENST00000377819 NPR1P16066 1061 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 LMNB1P20700 586 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 ASPHQ12797 758 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 RRS1Q15050 365 aaKnown RBP11.76□□□□□ -0.53
RTN3-206ENST00000377819 CFAP61Q8NHU2 1237 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 VPS37BQ9H9H4 285 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 ANAPC5Q9UJX4 755 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 USTQ9Y2C2 406 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 VPS41P49754 854 aa11.76□□□□□ -0.53
RTN3-206ENST00000377819 TUBB2AQ13885 445 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms