RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 MEI1Q5TIA1 1274 aa4.16□□□□□ -1.74
VPS13A-206ENST00000376646 HEXIM2Q96MH2 286 aaKnown RBP4.16□□□□□ -1.74
VPS13A-206ENST00000376646 F6X3S4 739 aa4.15□□□□□ -1.74
VPS13A-206ENST00000376646 TRIM37O94972 964 aa4.15□□□□□ -1.74
VPS13A-206ENST00000376646 GNA15P30679 374 aa4.15□□□□□ -1.74
VPS13A-206ENST00000376646 TAGLNQ01995 201 aaKnown RBP4.15□□□□□ -1.74
VPS13A-206ENST00000376646 RING1Q06587 406 aa4.15□□□□□ -1.74
VPS13A-206ENST00000376646 ZBTB37Q5TC79 503 aa4.15□□□□□ -1.74
VPS13A-206ENST00000376646 SND1Q7KZF4 910 aaKnown RBP eCLIP4.15□□□□□ -1.74
VPS13A-206ENST00000376646 GAL3ST3Q96A11 431 aa4.15□□□□□ -1.74
VPS13A-206ENST00000376646 FBRSQ9HAH7 460 aa4.15□□□□□ -1.74
VPS13A-206ENST00000376646 PLAGL2Q9UPG8 496 aa4.15□□□□□ -1.74
VPS13A-206ENST00000376646 PCDHB5Q9Y5E4 795 aa4.15□□□□□ -1.74
VPS13A-206ENST00000376646 EIF4BP23588 611 aaKnown RBP4.15□□□□□ -1.75
VPS13A-206ENST00000376646 SEPT6Q14141 434 aa4.15□□□□□ -1.75
VPS13A-206ENST00000376646 TTBK2Q6IQ55 1244 aa4.15□□□□□ -1.75
VPS13A-206ENST00000376646 ELMO3Q96BJ8 720 aa4.15□□□□□ -1.75
VPS13A-206ENST00000376646 PLPPR2Q96GM1 343 aa4.15□□□□□ -1.75
VPS13A-206ENST00000376646 CNTNAP4Q9C0A0 1308 aa4.14□□□□□ -1.75
VPS13A-206ENST00000376646 GIPC1O14908 333 aa4.14□□□□□ -1.75
VPS13A-206ENST00000376646 PRPF40AO75400 957 aaKnown RBP4.14□□□□□ -1.75
VPS13A-206ENST00000376646 CD8BP10966 210 aa4.14□□□□□ -1.75
VPS13A-206ENST00000376646 PDIA4P13667 645 aaKnown RBP4.14□□□□□ -1.75
VPS13A-206ENST00000376646 OXCT1P55809 520 aa4.14□□□□□ -1.75
VPS13A-206ENST00000376646 CCDC85BQ15834 202 aaPredicted RBP4.14□□□□□ -1.75
VPS13A-206ENST00000376646 NKG7Q16617 165 aa4.14□□□□□ -1.75
VPS13A-206ENST00000376646 LCE4AQ5TA78 99 aa4.14□□□□□ -1.75
VPS13A-206ENST00000376646 FBXL18Q96ME1 805 aa4.14□□□□□ -1.75
VPS13A-206ENST00000376646 SLC5A6Q9Y289 635 aa4.14□□□□□ -1.75
VPS13A-206ENST00000376646 SAMM50Q9Y512 469 aa4.14□□□□□ -1.75
VPS13A-206ENST00000376646 PLCL1Q15111 1095 aa4.14□□□□□ -1.75
VPS13A-206ENST00000376646 EAPPQ56P03 285 aaPredicted RBP4.14□□□□□ -1.75
VPS13A-206ENST00000376646 CBLL1Q75N03 491 aa4.14□□□□□ -1.75
VPS13A-206ENST00000376646 NETO1Q8TDF5 533 aa4.14□□□□□ -1.75
VPS13A-206ENST00000376646 PARP2Q9UGN5 583 aa4.14□□□□□ -1.75
VPS13A-206ENST00000376646 HNRNPUQ00839 825 aaKnown RBP eCLIP4.13□□□□□ -1.75
VPS13A-206ENST00000376646 LRRC14Q15048 493 aa4.13□□□□□ -1.75
VPS13A-206ENST00000376646 WIPI1Q5MNZ9 446 aaPredicted RBP4.13□□□□□ -1.75
VPS13A-206ENST00000376646 DNAJC14Q6Y2X3 702 aaPredicted RBP4.13□□□□□ -1.75
VPS13A-206ENST00000376646 ARHGAP27Q6ZUM4 889 aa4.13□□□□□ -1.75
VPS13A-206ENST00000376646 ARMCX6Q7L4S7 300 aa4.13□□□□□ -1.75
VPS13A-206ENST00000376646 FAM214BQ7L5A3 538 aa4.13□□□□□ -1.75
VPS13A-206ENST00000376646 NPAS4Q8IUM7 802 aa4.13□□□□□ -1.75
VPS13A-206ENST00000376646 PRDM10Q9NQV6 1147 aa4.13□□□□□ -1.75
VPS13A-206ENST00000376646 PRDM7Q9NQW5 492 aa4.13□□□□□ -1.75
VPS13A-206ENST00000376646 ADAMTS6Q9UKP5 1117 aa4.13□□□□□ -1.75
VPS13A-206ENST00000376646 CYP8B1Q9UNU6 501 aa4.13□□□□□ -1.75
VPS13A-206ENST00000376646 AK5Q9Y6K8 562 aa4.13□□□□□ -1.75
VPS13A-206ENST00000376646 CEACAM5P06731 702 aa4.12□□□□□ -1.75
VPS13A-206ENST00000376646 AOC3Q16853 763 aa4.12□□□□□ -1.75
VPS13A-206ENST00000376646 XAGE3Q8WTP9 111 aa4.12□□□□□ -1.75
VPS13A-206ENST00000376646 TLR6Q9Y2C9 796 aa4.12□□□□□ -1.75
VPS13A-206ENST00000376646 PRR33A8MZF0 331 aa4.12□□□□□ -1.75
VPS13A-206ENST00000376646 FANCGO15287 622 aa4.12□□□□□ -1.75
VPS13A-206ENST00000376646 EOMESO95936 686 aa4.12□□□□□ -1.75
VPS13A-206ENST00000376646 ZNF792Q3KQV3 632 aa4.12□□□□□ -1.75
VPS13A-206ENST00000376646 SV2BQ7L1I2 683 aa4.12□□□□□ -1.75
VPS13A-206ENST00000376646 CDC37L1Q7L3B6 337 aa4.12□□□□□ -1.75
VPS13A-206ENST00000376646 RIN3Q8TB24 985 aa4.12□□□□□ -1.75
VPS13A-206ENST00000376646 ANKRD24Q8TF21 1146 aa4.12□□□□□ -1.75
VPS13A-206ENST00000376646 SLITRK5O94991 958 aa4.11□□□□□ -1.75
VPS13A-206ENST00000376646 CTSHP09668 335 aa4.11□□□□□ -1.75
VPS13A-206ENST00000376646 ETF1P62495 437 aaKnown RBP4.11□□□□□ -1.75
VPS13A-206ENST00000376646 SLBPQ14493 270 aaKnown RBP eCLIP4.11□□□□□ -1.75
VPS13A-206ENST00000376646 CYFIP1Q7L576 1253 aa4.11□□□□□ -1.75
VPS13A-206ENST00000376646 DPH2Q9BQC3 489 aaPredicted RBP4.11□□□□□ -1.75
VPS13A-206ENST00000376646 PATL2C9JE40 543 aaKnown RBP4.11□□□□□ -1.75
VPS13A-206ENST00000376646 TFE3P19532 575 aaPredicted RBP4.11□□□□□ -1.75
VPS13A-206ENST00000376646 LIG3P49916 1009 aa4.11□□□□□ -1.75
VPS13A-206ENST00000376646 IFI16Q16666 785 aaKnown RBP4.11□□□□□ -1.75
VPS13A-206ENST00000376646 NKPD1Q17RQ9 610 aa4.11□□□□□ -1.75
VPS13A-206ENST00000376646 HDXQ7Z353 690 aa4.11□□□□□ -1.75
VPS13A-206ENST00000376646 SPACA3Q8IXA5 215 aa4.11□□□□□ -1.75
VPS13A-206ENST00000376646 AGBL5Q8NDL9 886 aa4.11□□□□□ -1.75
VPS13A-206ENST00000376646 RNASE1P07998 156 aaKnown RBP4.1□□□□□ -1.75
VPS13A-206ENST00000376646 GRK4P32298 578 aa4.1□□□□□ -1.75
VPS13A-206ENST00000376646 PSMD2Q13200 908 aa4.1□□□□□ -1.75
VPS13A-206ENST00000376646 JARID2Q92833 1246 aaPredicted RBP4.1□□□□□ -1.75
VPS13A-206ENST00000376646 MIPEPQ99797 713 aa4.1□□□□□ -1.75
VPS13A-206ENST00000376646 MBNL3Q9NUK0 354 aaKnown RBP4.1□□□□□ -1.75
VPS13A-206ENST00000376646 PAPLNO95428 1278 aa4.1□□□□□ -1.75
VPS13A-206ENST00000376646 PRKCQQ04759 706 aa4.1□□□□□ -1.75
VPS13A-206ENST00000376646 FBXO33Q7Z6M2 555 aa4.1□□□□□ -1.75
VPS13A-206ENST00000376646 ZNF507Q8TCN5 953 aa4.1□□□□□ -1.75
VPS13A-206ENST00000376646 HRASLS5Q96KN8 279 aa4.1□□□□□ -1.75
VPS13A-206ENST00000376646 FRMD6Q96NE9 622 aa4.1□□□□□ -1.75
VPS13A-206ENST00000376646 WNT10AQ9GZT5 417 aa4.1□□□□□ -1.75
VPS13A-206ENST00000376646 GZF1Q9H116 711 aaPredicted RBP4.1□□□□□ -1.75
VPS13A-206ENST00000376646 GFRA2O00451 464 aa4.09□□□□□ -1.75
VPS13A-206ENST00000376646 FUT4P22083 530 aa4.09□□□□□ -1.75
VPS13A-206ENST00000376646 DAB2P98082 770 aa4.09□□□□□ -1.75
VPS13A-206ENST00000376646 PRAMEF13Q5VWM6 474 aa4.09□□□□□ -1.75
VPS13A-206ENST00000376646 AGMOQ6ZNB7 445 aa4.09□□□□□ -1.75
VPS13A-206ENST00000376646 STK11IPQ8N1F8 1099 aa4.09□□□□□ -1.75
VPS13A-206ENST00000376646 RC3H2Q9HBD1 1191 aaKnown RBP4.09□□□□□ -1.75
VPS13A-206ENST00000376646 VAV3Q9UKW4 847 aa4.09□□□□□ -1.75
VPS13A-206ENST00000376646 TPX2Q9ULW0 747 aaKnown RBP4.09□□□□□ -1.75
VPS13A-206ENST00000376646 TMEM265A0A087WTH1 108 aa4.09□□□□□ -1.76
VPS13A-206ENST00000376646 LRIG2O94898 1065 aa4.09□□□□□ -1.76
VPS13A-206ENST00000376646 ITGB5P18084 799 aa4.09□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms