RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 TBC1D8O95759 1140 aa13.85□□□□□ -0.19
VPS13A-204ENST00000376634 P4HA1P13674 534 aa13.85□□□□□ -0.19
VPS13A-204ENST00000376634 SEPT10Q9P0V9 454 aa13.85□□□□□ -0.19
VPS13A-204ENST00000376634 ECM2O94769 699 aaPredicted RBP13.85□□□□□ -0.19
VPS13A-204ENST00000376634 SBNO2Q9Y2G9 1366 aa13.85□□□□□ -0.19
VPS13A-204ENST00000376634 RASSF2P50749 326 aa13.85□□□□□ -0.19
VPS13A-204ENST00000376634 CHST3Q7LGC8 479 aa13.85□□□□□ -0.19
VPS13A-204ENST00000376634 MIGA1Q8NAN2 632 aa13.85□□□□□ -0.19
VPS13A-204ENST00000376634 EYA3Q99504 573 aa13.85□□□□□ -0.19
VPS13A-204ENST00000376634 GCC2Q8IWJ2 1684 aa13.85□□□□□ -0.19
VPS13A-204ENST00000376634 FAM83GA6ND36 823 aa13.85□□□□□ -0.19
VPS13A-204ENST00000376634 CLCN1P35523 988 aa13.85□□□□□ -0.19
VPS13A-204ENST00000376634 RUFY4Q6ZNE9 571 aa13.85□□□□□ -0.19
VPS13A-204ENST00000376634 DUOX2Q9NRD8 1548 aa13.85□□□□□ -0.19
VPS13A-204ENST00000376634 FLOT1O75955 427 aa13.85□□□□□ -0.19
VPS13A-204ENST00000376634 FANCAO15360 1455 aa13.85□□□□□ -0.19
VPS13A-204ENST00000376634 SYT10Q6XYQ8 523 aa13.84□□□□□ -0.19
VPS13A-204ENST00000376634 BCRP11274 1271 aa13.84□□□□□ -0.19
VPS13A-204ENST00000376634 IRX4P78413 519 aa13.84□□□□□ -0.19
VPS13A-204ENST00000376634 PPFIA1Q13136 1202 aa13.84□□□□□ -0.19
VPS13A-204ENST00000376634 NPHP3Q7Z494 1330 aa13.84□□□□□ -0.19
VPS13A-204ENST00000376634 RPS6KA2Q15349 733 aa13.84□□□□□ -0.19
VPS13A-204ENST00000376634 RIOK1Q9BRS2 568 aaKnown RBP13.84□□□□□ -0.19
VPS13A-204ENST00000376634 APOBRQ0VD83 1088 aa13.84□□□□□ -0.19
VPS13A-204ENST00000376634 DACT3Q96B18 629 aaPredicted RBP13.84□□□□□ -0.19
VPS13A-204ENST00000376634 TTF2Q9UNY4 1162 aaKnown RBP13.84□□□□□ -0.19
VPS13A-204ENST00000376634 MYL5Q02045 173 aa13.84□□□□□ -0.19
VPS13A-204ENST00000376634 CADPS2Q86UW7 1296 aa13.84□□□□□ -0.19
VPS13A-204ENST00000376634 HAUS8Q9BT25 410 aa13.84□□□□□ -0.19
VPS13A-204ENST00000376634 EVCP57679 992 aa13.84□□□□□ -0.19
VPS13A-204ENST00000376634 ANKFY1Q9P2R3 1169 aa13.84□□□□□ -0.19
VPS13A-204ENST00000376634 M0QZ92 97 aa13.84□□□□□ -0.19
VPS13A-204ENST00000376634 ARHGEF35A5YM69 484 aa13.83□□□□□ -0.19
VPS13A-204ENST00000376634 TXNDC9O14530 226 aa13.83□□□□□ -0.19
VPS13A-204ENST00000376634 RNASE9P60153 205 aaKnown RBP13.83□□□□□ -0.19
VPS13A-204ENST00000376634 MTMR3Q13615 1198 aa13.83□□□□□ -0.19
VPS13A-204ENST00000376634 CERS3Q8IU89 383 aa13.83□□□□□ -0.2
VPS13A-204ENST00000376634 ACSBG1Q96GR2 724 aa13.83□□□□□ -0.2
VPS13A-204ENST00000376634 CREB3L3Q68CJ9 461 aa13.83□□□□□ -0.2
VPS13A-204ENST00000376634 ZCRB1Q8TBF4 217 aaKnown RBP13.83□□□□□ -0.2
VPS13A-204ENST00000376634 ARHGAP45Q92619 1136 aa13.83□□□□□ -0.2
VPS13A-204ENST00000376634 LETM2Q2VYF4 491 aa13.83□□□□□ -0.2
VPS13A-204ENST00000376634 RBSNQ9H1K0 784 aa13.83□□□□□ -0.2
VPS13A-204ENST00000376634 PRIM1P49642 420 aaKnown RBP13.83□□□□□ -0.2
VPS13A-204ENST00000376634 KIF11P52732 1056 aa13.83□□□□□ -0.2
VPS13A-204ENST00000376634 MRPL44Q9H9J2 332 aaKnown RBP13.83□□□□□ -0.2
VPS13A-204ENST00000376634 THOC2Q8NI27 1593 aaKnown RBP13.83□□□□□ -0.2
VPS13A-204ENST00000376634 ZBTB17Q13105 803 aa13.83□□□□□ -0.2
VPS13A-204ENST00000376634 RILPQ96NA2 401 aa13.83□□□□□ -0.2
VPS13A-204ENST00000376634 PTPDC1A2A3K4 754 aa13.83□□□□□ -0.2
VPS13A-204ENST00000376634 DHX32Q7L7V1 743 aaKnown RBP13.83□□□□□ -0.2
VPS13A-204ENST00000376634 LPXNO60711 386 aa13.82□□□□□ -0.2
VPS13A-204ENST00000376634 KRT3P12035 628 aa13.82□□□□□ -0.2
VPS13A-204ENST00000376634 TPTE2Q6XPS3 522 aa13.82□□□□□ -0.2
VPS13A-204ENST00000376634 RTCBQ9Y3I0 505 aaKnown RBP13.82□□□□□ -0.2
VPS13A-204ENST00000376634 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.82□□□□□ -0.2
VPS13A-204ENST00000376634 TCHHQ07283 1943 aa13.82□□□□□ -0.2
VPS13A-204ENST00000376634 ALDH1L1O75891 902 aa13.82□□□□□ -0.2
VPS13A-204ENST00000376634 KRT12Q99456 494 aa13.82□□□□□ -0.2
VPS13A-204ENST00000376634 DKC1O60832 514 aaKnown RBP eCLIP13.82□□□□□ -0.2
VPS13A-204ENST00000376634 TSKSQ9UJT2 592 aa13.82□□□□□ -0.2
VPS13A-204ENST00000376634 TBC1D8BQ0IIM8 1120 aa13.82□□□□□ -0.2
VPS13A-204ENST00000376634 MIER3Q7Z3K6 550 aa13.82□□□□□ -0.2
VPS13A-204ENST00000376634 HACE1Q8IYU2 909 aa13.82□□□□□ -0.2
VPS13A-204ENST00000376634 RBM17Q96I25 401 aaKnown RBP13.82□□□□□ -0.2
VPS13A-204ENST00000376634 CCDC184Q52MB2 194 aa13.82□□□□□ -0.2
VPS13A-204ENST00000376634 NUP58Q9BVL2 599 aa13.82□□□□□ -0.2
VPS13A-204ENST00000376634 GINS2Q9Y248 185 aa13.82□□□□□ -0.2
VPS13A-204ENST00000376634 SOS1Q07889 1333 aaPredicted RBP13.82□□□□□ -0.2
VPS13A-204ENST00000376634 SKAP1Q86WV1 359 aa13.81□□□□□ -0.2
VPS13A-204ENST00000376634 YWHAEP62258 255 aaKnown RBP13.81□□□□□ -0.2
VPS13A-204ENST00000376634 SLC9C1Q4G0N8 1177 aa13.81□□□□□ -0.2
VPS13A-204ENST00000376634 GPCPD1Q9NPB8 672 aa13.81□□□□□ -0.2
VPS13A-204ENST00000376634 CALCRLQ16602 461 aa13.81□□□□□ -0.2
VPS13A-204ENST00000376634 MUM1Q2TAK8 710 aa13.81□□□□□ -0.2
VPS13A-204ENST00000376634 RBM26Q5T8P6 1007 aaKnown RBP13.81□□□□□ -0.2
VPS13A-204ENST00000376634 KSR2Q6VAB6 950 aa13.81□□□□□ -0.2
VPS13A-204ENST00000376634 IVNS1ABPQ9Y6Y0 642 aa13.81□□□□□ -0.2
VPS13A-204ENST00000376634 PHBP35232 272 aa13.81□□□□□ -0.2
VPS13A-204ENST00000376634 CCDC105Q8IYK2 499 aa13.81□□□□□ -0.2
VPS13A-204ENST00000376634 HOOK2Q96ED9 719 aa13.81□□□□□ -0.2
VPS13A-204ENST00000376634 CD2APQ9Y5K6 639 aa13.81□□□□□ -0.2
VPS13A-204ENST00000376634 CFAP221Q4G0U5 840 aa13.81□□□□□ -0.2
VPS13A-204ENST00000376634 P3H4Q92791 437 aa13.81□□□□□ -0.2
VPS13A-204ENST00000376634 KRT15P19012 456 aa13.81□□□□□ -0.2
VPS13A-204ENST00000376634 GCNT3O95395 438 aa13.81□□□□□ -0.2
VPS13A-204ENST00000376634 TRIM31Q9BZY9 425 aa13.81□□□□□ -0.2
VPS13A-204ENST00000376634 MAP3K1Q13233 1512 aa13.81□□□□□ -0.2
VPS13A-204ENST00000376634 MAP3K5Q99683 1374 aa13.81□□□□□ -0.2
VPS13A-204ENST00000376634 RSAD2Q8WXG1 361 aa13.81□□□□□ -0.2
VPS13A-204ENST00000376634 SNX21Q969T3 373 aa13.81□□□□□ -0.2
VPS13A-204ENST00000376634 XAB2Q9HCS7 855 aaKnown RBP13.81□□□□□ -0.2
VPS13A-204ENST00000376634 ZNF277Q9NRM2 450 aaPredicted RBP13.81□□□□□ -0.2
VPS13A-204ENST00000376634 POLR2DO15514 142 aaKnown RBP13.8□□□□□ -0.2
VPS13A-204ENST00000376634 KRT81Q14533 505 aa13.8□□□□□ -0.2
VPS13A-204ENST00000376634 ZNF174Q15697 407 aa13.8□□□□□ -0.2
VPS13A-204ENST00000376634 RAB17Q9H0T7 212 aa13.8□□□□□ -0.2
VPS13A-204ENST00000376634 SAP30BPQ9UHR5 308 aaKnown RBP13.8□□□□□ -0.2
VPS13A-204ENST00000376634 PLXNC1O60486 1568 aa13.8□□□□□ -0.2
VPS13A-204ENST00000376634 HGSO14964 777 aaPredicted RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms