RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 MNAT1P51948 309 aa13.16□□□□□ -0.3
COL9A1-202ENST00000357250 SEL1L2Q5TEA6 688 aa13.16□□□□□ -0.3
COL9A1-202ENST00000357250 MCTP2Q6DN12 878 aa13.16□□□□□ -0.3
COL9A1-202ENST00000357250 FCHSD1Q86WN1 690 aa13.16□□□□□ -0.3
COL9A1-202ENST00000357250 CCDC51Q96ER9 411 aa13.16□□□□□ -0.3
COL9A1-202ENST00000357250 ZNF274Q96GC6 653 aaPredicted RBP13.16□□□□□ -0.3
COL9A1-202ENST00000357250 PDE4DQ08499 809 aa13.15□□□□□ -0.3
COL9A1-202ENST00000357250 PAK1Q13153 545 aa13.15□□□□□ -0.3
COL9A1-202ENST00000357250 CCDC84Q86UT8 332 aaPredicted RBP13.15□□□□□ -0.3
COL9A1-202ENST00000357250 FAM76AQ8TAV0 307 aa13.15□□□□□ -0.3
COL9A1-202ENST00000357250 GNPATO15228 680 aa13.15□□□□□ -0.3
COL9A1-202ENST00000357250 EVCP57679 992 aa13.15□□□□□ -0.3
COL9A1-202ENST00000357250 ZNF174Q15697 407 aa13.15□□□□□ -0.3
COL9A1-202ENST00000357250 LETM2Q2VYF4 491 aa13.15□□□□□ -0.3
COL9A1-202ENST00000357250 FAM182BQ5T319 152 aa13.15□□□□□ -0.3
COL9A1-202ENST00000357250 FAM173BQ6P4H8 233 aa13.15□□□□□ -0.3
COL9A1-202ENST00000357250 SYNRGQ9UMZ2 1314 aa13.15□□□□□ -0.3
COL9A1-202ENST00000357250 ERVV-2B6SEH9 535 aa13.15□□□□□ -0.3
COL9A1-202ENST00000357250 KCNQ4P56696 695 aa13.15□□□□□ -0.3
COL9A1-202ENST00000357250 PPP2R3AQ06190 1150 aa13.15□□□□□ -0.3
COL9A1-202ENST00000357250 NONOQ15233 471 aaKnown RBP eCLIP13.15□□□□□ -0.3
COL9A1-202ENST00000357250 GSTA5Q7RTV2 222 aa13.15□□□□□ -0.3
COL9A1-202ENST00000357250 SPATA24Q86W54 205 aa13.15□□□□□ -0.3
COL9A1-202ENST00000357250 RSPH14Q9UHP6 348 aa13.15□□□□□ -0.3
COL9A1-202ENST00000357250 KCNG1Q9UIX4 513 aa13.15□□□□□ -0.3
COL9A1-202ENST00000357250 IGSF1Q8N6C5 1336 aa13.15□□□□□ -0.3
COL9A1-202ENST00000357250 ZNF202O95125 648 aa13.15□□□□□ -0.31
COL9A1-202ENST00000357250 TRAPPC3LQ5T215 181 aa13.15□□□□□ -0.31
COL9A1-202ENST00000357250 LMBRD1Q9NUN5 540 aa13.15□□□□□ -0.31
COL9A1-202ENST00000357250 SSX2IPQ9Y2D8 614 aa13.15□□□□□ -0.31
COL9A1-202ENST00000357250 CALUO43852 315 aaPredicted RBP13.14□□□□□ -0.31
COL9A1-202ENST00000357250 CNBD1Q8NA66 436 aa13.14□□□□□ -0.31
COL9A1-202ENST00000357250 EXOC7Q9UPT5 735 aa13.14□□□□□ -0.31
COL9A1-202ENST00000357250 A2ML1A8K2U0 1454 aa13.14□□□□□ -0.31
COL9A1-202ENST00000357250 EEF2P13639 858 aaKnown RBP13.14□□□□□ -0.31
COL9A1-202ENST00000357250 ALDH3A1P30838 453 aa13.14□□□□□ -0.31
COL9A1-202ENST00000357250 SMTNP53814 917 aa13.14□□□□□ -0.31
COL9A1-202ENST00000357250 ARID5AQ03989 594 aa13.14□□□□□ -0.31
COL9A1-202ENST00000357250 TRMT1LQ7Z2T5 733 aaKnown RBP13.14□□□□□ -0.31
COL9A1-202ENST00000357250 JDP2Q8WYK2 163 aa13.14□□□□□ -0.31
COL9A1-202ENST00000357250 RPGRIP1Q96KN7 1286 aa13.14□□□□□ -0.31
COL9A1-202ENST00000357250 SMC6Q96SB8 1091 aa13.14□□□□□ -0.31
COL9A1-202ENST00000357250 CBX8Q9HC52 389 aa13.14□□□□□ -0.31
COL9A1-202ENST00000357250 ACTN4O43707 911 aaKnown RBP13.14□□□□□ -0.31
COL9A1-202ENST00000357250 CCT6AP40227 531 aaKnown RBP13.14□□□□□ -0.31
COL9A1-202ENST00000357250 CSGALNACT2Q8N6G5 542 aa13.14□□□□□ -0.31
COL9A1-202ENST00000357250 OTUD6BQ8N6M0 293 aa13.14□□□□□ -0.31
COL9A1-202ENST00000357250 GPR161Q8N6U8 529 aaKnown RBP13.14□□□□□ -0.31
COL9A1-202ENST00000357250 TBC1D22AQ8WUA7 517 aa13.14□□□□□ -0.31
COL9A1-202ENST00000357250 NDC80O14777 642 aa13.13□□□□□ -0.31
COL9A1-202ENST00000357250 CCDC14Q49A88 953 aa13.13□□□□□ -0.31
COL9A1-202ENST00000357250 KRT40Q6A162 431 aa13.13□□□□□ -0.31
COL9A1-202ENST00000357250 ARHGEF10LQ9HCE6 1279 aa13.13□□□□□ -0.31
COL9A1-202ENST00000357250 NEURL1BA8MQ27 555 aa13.13□□□□□ -0.31
COL9A1-202ENST00000357250 IBSPP21815 317 aaPredicted RBP13.13□□□□□ -0.31
COL9A1-202ENST00000357250 MSL1Q68DK7 614 aa13.13□□□□□ -0.31
COL9A1-202ENST00000357250 ZKSCAN3Q9BRR0 538 aa13.13□□□□□ -0.31
COL9A1-202ENST00000357250 V9GY48 417 aaPredicted RBP13.13□□□□□ -0.31
COL9A1-202ENST00000357250 TRPM1Q7Z4N2 1603 aa13.13□□□□□ -0.31
COL9A1-202ENST00000357250 AATKQ6ZMQ8 1374 aa13.13□□□□□ -0.31
COL9A1-202ENST00000357250 PLCB3Q01970 1234 aa13.13□□□□□ -0.31
COL9A1-202ENST00000357250 EAF2Q96CJ1 260 aaPredicted RBP13.13□□□□□ -0.31
COL9A1-202ENST00000357250 ASAP1Q9ULH1 1129 aa13.13□□□□□ -0.31
COL9A1-202ENST00000357250 CTNND2Q9UQB3 1225 aa13.13□□□□□ -0.31
COL9A1-202ENST00000357250 CCDC6Q16204 474 aa13.13□□□□□ -0.31
COL9A1-202ENST00000357250 SLC9C1Q4G0N8 1177 aa13.13□□□□□ -0.31
COL9A1-202ENST00000357250 WDR44Q5JSH3 913 aa13.13□□□□□ -0.31
COL9A1-202ENST00000357250 ADALQ6DHV7 355 aa13.13□□□□□ -0.31
COL9A1-202ENST00000357250 CPLX4Q7Z7G2 160 aa13.13□□□□□ -0.31
COL9A1-202ENST00000357250 GTF3C6Q969F1 213 aa13.13□□□□□ -0.31
COL9A1-202ENST00000357250 HOOK2Q96ED9 719 aa13.13□□□□□ -0.31
COL9A1-202ENST00000357250 SAMD15Q9P1V8 674 aa13.13□□□□□ -0.31
COL9A1-202ENST00000357250 RNF17Q9BXT8 1623 aaKnown RBP13.13□□□□□ -0.31
COL9A1-202ENST00000357250 KDRP35968 1356 aa13.13□□□□□ -0.31
COL9A1-202ENST00000357250 SIRT2Q8IXJ6 389 aa13.12□□□□□ -0.31
COL9A1-202ENST00000357250 CHAMP1Q96JM3 812 aa13.12□□□□□ -0.31
COL9A1-202ENST00000357250 CAPZA3Q96KX2 299 aa13.12□□□□□ -0.31
COL9A1-202ENST00000357250 ARMT1Q9H993 441 aa13.12□□□□□ -0.31
COL9A1-202ENST00000357250 AXIN2Q9Y2T1 843 aa13.12□□□□□ -0.31
COL9A1-202ENST00000357250 MAP3K4Q9Y6R4 1608 aa13.12□□□□□ -0.31
COL9A1-202ENST00000357250 ZNF335Q9H4Z2 1342 aaPredicted RBP13.12□□□□□ -0.31
COL9A1-202ENST00000357250 POLR2DO15514 142 aaKnown RBP13.12□□□□□ -0.31
COL9A1-202ENST00000357250 BEND3Q5T5X7 828 aa13.12□□□□□ -0.31
COL9A1-202ENST00000357250 NOX5Q96PH1 765 aa13.12□□□□□ -0.31
COL9A1-202ENST00000357250 POSTNQ15063 836 aa13.12□□□□□ -0.31
COL9A1-202ENST00000357250 PIK3AP1Q6ZUJ8 805 aa13.12□□□□□ -0.31
COL9A1-202ENST00000357250 B4GALNT4Q76KP1 1039 aa13.12□□□□□ -0.31
COL9A1-202ENST00000357250 UNC5CLQ8IV45 518 aa13.12□□□□□ -0.31
COL9A1-202ENST00000357250 TMEM87AQ8NBN3 555 aa13.12□□□□□ -0.31
COL9A1-202ENST00000357250 CCDC87Q9NVE4 849 aa13.12□□□□□ -0.31
COL9A1-202ENST00000357250 VPS18Q9P253 973 aa13.12□□□□□ -0.31
COL9A1-202ENST00000357250 GGA1Q9UJY5 639 aa13.12□□□□□ -0.31
COL9A1-202ENST00000357250 PPP1R7Q15435 360 aa13.12□□□□□ -0.31
COL9A1-202ENST00000357250 CCDC50Q8IVM0 306 aa13.12□□□□□ -0.31
COL9A1-202ENST00000357250 TRIML1Q8N9V2 468 aa13.12□□□□□ -0.31
COL9A1-202ENST00000357250 MYRIPQ8NFW9 859 aa13.12□□□□□ -0.31
COL9A1-202ENST00000357250 RHOXF2BP0C7M4 288 aa13.11□□□□□ -0.31
COL9A1-202ENST00000357250 PCP11498 1178 aaKnown RBP13.11□□□□□ -0.31
COL9A1-202ENST00000357250 SNX16P57768 344 aa13.11□□□□□ -0.31
COL9A1-202ENST00000357250 ZBTB16Q05516 673 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms