RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 FAM157BP0CG42 384 aa9.08□□□□□ -0.96
VPS13A-201ENST00000355766 ADH6P28332 368 aa9.08□□□□□ -0.96
VPS13A-201ENST00000355766 EPHX2P34913 555 aa9.08□□□□□ -0.96
VPS13A-201ENST00000355766 WDR43Q15061 677 aaKnown RBP eCLIP9.08□□□□□ -0.96
VPS13A-201ENST00000355766 TEAD4Q15561 434 aa9.08□□□□□ -0.96
VPS13A-201ENST00000355766 TBCELQ5QJ74 424 aa9.08□□□□□ -0.96
VPS13A-201ENST00000355766 SAMD5Q5TGI4 173 aa9.08□□□□□ -0.96
VPS13A-201ENST00000355766 AEBP1Q8IUX7 1158 aa9.08□□□□□ -0.96
VPS13A-201ENST00000355766 SLC9A9Q8IVB4 645 aa9.08□□□□□ -0.96
VPS13A-201ENST00000355766 FAM9BQ8IZU0 186 aa9.08□□□□□ -0.96
VPS13A-201ENST00000355766 SLC52A2Q9HAB3 445 aa9.08□□□□□ -0.96
VPS13A-201ENST00000355766 SCN11AQ9UI33 1791 aa9.08□□□□□ -0.96
VPS13A-201ENST00000355766 COL3A1P02461 1466 aaPredicted RBP9.08□□□□□ -0.96
VPS13A-201ENST00000355766 NOS2P35228 1153 aa9.07□□□□□ -0.96
VPS13A-201ENST00000355766 FLIIQ13045 1269 aa9.07□□□□□ -0.96
VPS13A-201ENST00000355766 GRIN2CQ14957 1233 aa9.07□□□□□ -0.96
VPS13A-201ENST00000355766 TBC1D9BQ66K14 1250 aa9.07□□□□□ -0.96
VPS13A-201ENST00000355766 MAP1SQ66K74 1059 aaPredicted RBP9.07□□□□□ -0.96
VPS13A-201ENST00000355766 STYK1Q6J9G0 422 aa9.07□□□□□ -0.96
VPS13A-201ENST00000355766 PNMA8AQ86V59 439 aaPredicted RBP9.07□□□□□ -0.96
VPS13A-201ENST00000355766 ALYREFQ86V81 257 aaKnown RBP9.07□□□□□ -0.96
VPS13A-201ENST00000355766 FCHSD1Q86WN1 690 aa9.07□□□□□ -0.96
VPS13A-201ENST00000355766 CNTROBQ8N137 903 aa9.07□□□□□ -0.96
VPS13A-201ENST00000355766 CAPNS2Q96L46 248 aa9.07□□□□□ -0.96
VPS13A-201ENST00000355766 AVENQ9NQS1 362 aaPredicted RBP9.07□□□□□ -0.96
VPS13A-201ENST00000355766 KIAA1024Q9UPX6 916 aa9.07□□□□□ -0.96
VPS13A-201ENST00000355766 RNF123Q5XPI4 1314 aa9.06□□□□□ -0.96
VPS13A-201ENST00000355766 GNB5O14775 395 aa9.06□□□□□ -0.96
VPS13A-201ENST00000355766 ZBTB7BO15156 539 aaPredicted RBP9.06□□□□□ -0.96
VPS13A-201ENST00000355766 EFSO43281 561 aa9.06□□□□□ -0.96
VPS13A-201ENST00000355766 SRGNP10124 158 aa9.06□□□□□ -0.96
VPS13A-201ENST00000355766 ECE1P42892 770 aa9.06□□□□□ -0.96
VPS13A-201ENST00000355766 TNNT2P45379 298 aaPredicted RBP9.06□□□□□ -0.96
VPS13A-201ENST00000355766 DGKGP49619 791 aa9.06□□□□□ -0.96
VPS13A-201ENST00000355766 PCBP4P57723 403 aaKnown RBP9.06□□□□□ -0.96
VPS13A-201ENST00000355766 CCDC93Q567U6 631 aa9.06□□□□□ -0.96
VPS13A-201ENST00000355766 CHSY3Q70JA7 882 aa9.06□□□□□ -0.96
VPS13A-201ENST00000355766 C7orf43Q8WVR3 580 aa9.06□□□□□ -0.96
VPS13A-201ENST00000355766 MCOLN1Q9GZU1 580 aa9.06□□□□□ -0.96
VPS13A-201ENST00000355766 DDX21Q9NR30 783 aaKnown RBP eCLIP9.06□□□□□ -0.96
VPS13A-201ENST00000355766 UBR2Q8IWV8 1755 aa9.06□□□□□ -0.96
VPS13A-201ENST00000355766 TNRC18O15417 2968 aaPredicted RBP9.05□□□□□ -0.96
VPS13A-201ENST00000355766 A0A087WZG4 1122 aa9.05□□□□□ -0.96
VPS13A-201ENST00000355766 EML1O00423 815 aa9.05□□□□□ -0.96
VPS13A-201ENST00000355766 ADAM23O75077 832 aa9.05□□□□□ -0.96
VPS13A-201ENST00000355766 CANXP27824 592 aaKnown RBP9.05□□□□□ -0.96
VPS13A-201ENST00000355766 EIF5P55010 431 aaKnown RBP9.05□□□□□ -0.96
VPS13A-201ENST00000355766 FKBP4Q02790 459 aaKnown RBP eCLIP9.05□□□□□ -0.96
VPS13A-201ENST00000355766 SLC39A6Q13433 755 aa9.05□□□□□ -0.96
VPS13A-201ENST00000355766 AKAP4Q5JQC9 854 aa9.05□□□□□ -0.96
VPS13A-201ENST00000355766 HDGFL1Q5TGJ6 251 aa9.05□□□□□ -0.96
VPS13A-201ENST00000355766 CYP4F22Q6NT55 531 aa9.05□□□□□ -0.96
VPS13A-201ENST00000355766 TRIM50Q86XT4 487 aa9.05□□□□□ -0.96
VPS13A-201ENST00000355766 PLEKHM2Q8IWE5 1019 aa9.05□□□□□ -0.96
VPS13A-201ENST00000355766 CNBD1Q8NA66 436 aa9.05□□□□□ -0.96
VPS13A-201ENST00000355766 TPCN2Q8NHX9 752 aa9.05□□□□□ -0.96
VPS13A-201ENST00000355766 MASTLQ96GX5 879 aa9.05□□□□□ -0.96
VPS13A-201ENST00000355766 UCN2Q96RP3 112 aa9.05□□□□□ -0.96
VPS13A-201ENST00000355766 MARK1Q9P0L2 795 aa9.05□□□□□ -0.96
VPS13A-201ENST00000355766 PRR12Q9ULL5 1215 aa9.05□□□□□ -0.96
VPS13A-201ENST00000355766 SLX4Q8IY92 1834 aa9.05□□□□□ -0.96
VPS13A-201ENST00000355766 BCORQ6W2J9 1755 aa9.04□□□□□ -0.96
VPS13A-201ENST00000355766 USP17L3A6NCW0 530 aa9.04□□□□□ -0.96
VPS13A-201ENST00000355766 USP17L4A6NCW7 530 aa9.04□□□□□ -0.96
VPS13A-201ENST00000355766 CA12O43570 354 aa9.04□□□□□ -0.96
VPS13A-201ENST00000355766 CLDN10P78369 228 aa9.04□□□□□ -0.96
VPS13A-201ENST00000355766 ST5P78524 1137 aa9.04□□□□□ -0.96
VPS13A-201ENST00000355766 SH3PXD2AQ5TCZ1 1133 aa9.04□□□□□ -0.96
VPS13A-201ENST00000355766 ZNF468Q5VIY5 522 aaPredicted RBP9.04□□□□□ -0.96
VPS13A-201ENST00000355766 CCDC102BQ68D86 513 aa9.04□□□□□ -0.96
VPS13A-201ENST00000355766 USP17L2Q6R6M4 530 aa9.04□□□□□ -0.96
VPS13A-201ENST00000355766 LRRC69Q6ZNQ3 347 aa9.04□□□□□ -0.96
VPS13A-201ENST00000355766 USP17L1Q7RTZ2 530 aa9.04□□□□□ -0.96
VPS13A-201ENST00000355766 GPR101Q96P66 508 aaPredicted RBP9.04□□□□□ -0.96
VPS13A-201ENST00000355766 ZNF277Q9NRM2 450 aaPredicted RBP9.04□□□□□ -0.96
VPS13A-201ENST00000355766 ZNF232Q9UNY5 417 aa9.04□□□□□ -0.96
VPS13A-201ENST00000355766 FZD9O00144 591 aa9.03□□□□□ -0.96
VPS13A-201ENST00000355766 PIK3R2O00459 728 aa9.03□□□□□ -0.96
VPS13A-201ENST00000355766 RNMTO43148 476 aaKnown RBP9.03□□□□□ -0.96
VPS13A-201ENST00000355766 GRM1Q13255 1194 aa9.03□□□□□ -0.96
VPS13A-201ENST00000355766 LAMC2Q13753 1193 aa9.03□□□□□ -0.96
VPS13A-201ENST00000355766 SULT6B1Q6IMI4 303 aa9.03□□□□□ -0.96
VPS13A-201ENST00000355766 GPC2Q8N158 579 aa9.03□□□□□ -0.96
VPS13A-201ENST00000355766 PNNQ9H307 717 aaKnown RBP9.03□□□□□ -0.96
VPS13A-201ENST00000355766 LGR6Q9HBX8 967 aa9.03□□□□□ -0.96
VPS13A-201ENST00000355766 NUDCQ9Y266 331 aa9.03□□□□□ -0.96
VPS13A-201ENST00000355766 SNED1Q8TER0 1413 aa9.03□□□□□ -0.96
VPS13A-201ENST00000355766 CACNA1SQ13698 1873 aa9.02□□□□□ -0.96
VPS13A-201ENST00000355766 SERTM1A2A2V5 107 aa9.02□□□□□ -0.97
VPS13A-201ENST00000355766 NPHP1O15259 732 aa9.02□□□□□ -0.97
VPS13A-201ENST00000355766 STARD3NLO95772 234 aa9.02□□□□□ -0.97
VPS13A-201ENST00000355766 MAP2K2P36507 400 aa9.02□□□□□ -0.97
VPS13A-201ENST00000355766 FMR1Q06787 632 aaKnown RBP eCLIP9.02□□□□□ -0.97
VPS13A-201ENST00000355766 ATP9BO43861 1147 aa9.01□□□□□ -0.97
VPS13A-201ENST00000355766 AOC2O75106 756 aa9.01□□□□□ -0.97
VPS13A-201ENST00000355766 CAMTA2O94983 1202 aa9.01□□□□□ -0.97
VPS13A-201ENST00000355766 NPR1P16066 1061 aa9.01□□□□□ -0.97
VPS13A-201ENST00000355766 IARSP41252 1262 aaKnown RBP9.01□□□□□ -0.97
VPS13A-201ENST00000355766 ATP1A2P50993 1020 aa9.01□□□□□ -0.97
VPS13A-201ENST00000355766 DGKZQ13574 1117 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms