RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 A0A1B0GVL5 298 aa18.19■□□□□ 0.5
HMGA1-202ENST00000347617 CCDC151A5D8V7 595 aa18.19■□□□□ 0.5
HMGA1-202ENST00000347617 UQCRFS1P1P0C7P4 283 aa18.19■□□□□ 0.5
HMGA1-202ENST00000347617 PDIA3P30101 505 aaKnown RBP18.19■□□□□ 0.5
HMGA1-202ENST00000347617 APOBRQ0VD83 1088 aa18.19■□□□□ 0.5
HMGA1-202ENST00000347617 SYNE3Q6ZMZ3 975 aa18.19■□□□□ 0.5
HMGA1-202ENST00000347617 ELOA2Q8IYF1 753 aaPredicted RBP18.19■□□□□ 0.5
HMGA1-202ENST00000347617 JMYQ8N9B5 988 aa18.19■□□□□ 0.5
HMGA1-202ENST00000347617 GOLGA1Q92805 767 aa18.19■□□□□ 0.5
HMGA1-202ENST00000347617 IVLP07476 585 aa18.18■□□□□ 0.5
HMGA1-202ENST00000347617 TOP1P11387 765 aaKnown RBP18.18■□□□□ 0.5
HMGA1-202ENST00000347617 RFC4P35249 363 aa18.18■□□□□ 0.5
HMGA1-202ENST00000347617 ERFEQ4G0M1 354 aa18.18■□□□□ 0.5
HMGA1-202ENST00000347617 STOX1Q6ZVD7 989 aa18.18■□□□□ 0.5
HMGA1-202ENST00000347617 FBXO18Q8NFZ0 1043 aa18.18■□□□□ 0.5
HMGA1-202ENST00000347617 MRFAP1Q9Y605 127 aa18.18■□□□□ 0.5
HMGA1-202ENST00000347617 BRWD3Q6RI45 1802 aa18.18■□□□□ 0.5
HMGA1-202ENST00000347617 FAM237AA0A1B0GTK4 181 aa18.17■□□□□ 0.5
HMGA1-202ENST00000347617 GOLIM4O00461 696 aa18.17■□□□□ 0.5
HMGA1-202ENST00000347617 POLR3GO15318 223 aaPredicted RBP18.17■□□□□ 0.5
HMGA1-202ENST00000347617 STX10O60499 249 aa18.17■□□□□ 0.5
HMGA1-202ENST00000347617 ZSCAN26Q16670 478 aa18.17■□□□□ 0.5
HMGA1-202ENST00000347617 OLFM4Q6UX06 510 aa18.17■□□□□ 0.5
HMGA1-202ENST00000347617 KRBA2Q6ZNG9 492 aa18.17■□□□□ 0.5
HMGA1-202ENST00000347617 HNRNPLLQ8WVV9 542 aaKnown RBP18.17■□□□□ 0.5
HMGA1-202ENST00000347617 EDC3Q96F86 508 aaKnown RBP18.17■□□□□ 0.5
HMGA1-202ENST00000347617 LRRC4BQ9NT99 713 aa18.17■□□□□ 0.5
HMGA1-202ENST00000347617 PPP2R2CQ9Y2T4 447 aa18.17■□□□□ 0.5
HMGA1-202ENST00000347617 RNF113AO15541 343 aaKnown RBP18.17■□□□□ 0.5
HMGA1-202ENST00000347617 SERPINC1P01008 464 aa18.17■□□□□ 0.5
HMGA1-202ENST00000347617 TUBBP07437 444 aa18.17■□□□□ 0.5
HMGA1-202ENST00000347617 ARID4AP29374 1257 aaPredicted RBP18.17■□□□□ 0.5
HMGA1-202ENST00000347617 ADORA1P30542 326 aa18.17■□□□□ 0.5
HMGA1-202ENST00000347617 PPP2R3AQ06190 1150 aa18.17■□□□□ 0.5
HMGA1-202ENST00000347617 TTF1Q15361 905 aaPredicted RBP18.17■□□□□ 0.5
HMGA1-202ENST00000347617 ZMYM1Q5SVZ6 1142 aa18.17■□□□□ 0.5
HMGA1-202ENST00000347617 MYSM1Q5VVJ2 828 aa18.17■□□□□ 0.5
HMGA1-202ENST00000347617 DDX46Q7L014 1031 aaKnown RBP18.17■□□□□ 0.5
HMGA1-202ENST00000347617 C8orf76Q96K31 380 aa18.17■□□□□ 0.5
HMGA1-202ENST00000347617 SLC5A1P13866 664 aa18.16■□□□□ 0.5
HMGA1-202ENST00000347617 NOM1Q5C9Z4 860 aaKnown RBP18.16■□□□□ 0.5
HMGA1-202ENST00000347617 SMARCE1Q969G3 411 aa18.16■□□□□ 0.5
HMGA1-202ENST00000347617 NLRP3Q96P20 1036 aa18.16■□□□□ 0.5
HMGA1-202ENST00000347617 SEC31BQ9NQW1 1179 aa18.16■□□□□ 0.5
HMGA1-202ENST00000347617 BSDC1Q9NW68 430 aaPredicted RBP18.16■□□□□ 0.5
HMGA1-202ENST00000347617 VWA3AA6NCI4 1184 aa18.15■□□□□ 0.5
HMGA1-202ENST00000347617 E7EWF7 191 aa18.15■□□□□ 0.5
HMGA1-202ENST00000347617 PLSCR1O15162 318 aa18.15■□□□□ 0.5
HMGA1-202ENST00000347617 EIF3JO75822 258 aaKnown RBP18.15■□□□□ 0.5
HMGA1-202ENST00000347617 TXLNAP40222 546 aa18.15■□□□□ 0.5
HMGA1-202ENST00000347617 ANO1Q5XXA6 986 aa18.15■□□□□ 0.5
HMGA1-202ENST00000347617 NBPF5PQ86XG9 351 aaPredicted RBP18.15■□□□□ 0.5
HMGA1-202ENST00000347617 GOLGA6L1Q8N7Z2 621 aa18.15■□□□□ 0.5
HMGA1-202ENST00000347617 NEK11Q8NG66 645 aa18.15■□□□□ 0.5
HMGA1-202ENST00000347617 TRIM34Q9BYJ4 488 aa18.15■□□□□ 0.5
HMGA1-202ENST00000347617 SRP68Q9UHB9 627 aaKnown RBP18.15■□□□□ 0.5
HMGA1-202ENST00000347617 WDR19Q8NEZ3 1342 aa18.15■□□□□ 0.5
HMGA1-202ENST00000347617 ARAP2Q8WZ64 1704 aa18.15■□□□□ 0.5
HMGA1-202ENST00000347617 PPP6R2O75170 966 aa18.14■□□□□ 0.5
HMGA1-202ENST00000347617 RPS6KA5O75582 802 aa18.14■□□□□ 0.5
HMGA1-202ENST00000347617 PFKFB1P16118 471 aa18.14■□□□□ 0.5
HMGA1-202ENST00000347617 LMOD1P29536 600 aaPredicted RBP18.14■□□□□ 0.5
HMGA1-202ENST00000347617 CCT2P78371 535 aaKnown RBP18.14■□□□□ 0.5
HMGA1-202ENST00000347617 CFAP100Q494V2 611 aa18.14■□□□□ 0.5
HMGA1-202ENST00000347617 ANKRD18AQ8IVF6 992 aa18.14■□□□□ 0.5
HMGA1-202ENST00000347617 FUT8Q9BYC5 575 aa18.14■□□□□ 0.5
HMGA1-202ENST00000347617 A0A087WWV3 80 aa18.14■□□□□ 0.49
HMGA1-202ENST00000347617 ERLIN1O75477 346 aa18.14■□□□□ 0.49
HMGA1-202ENST00000347617 TBX2Q13207 712 aaPredicted RBP18.14■□□□□ 0.49
HMGA1-202ENST00000347617 SLC39A14Q15043 492 aa18.14■□□□□ 0.49
HMGA1-202ENST00000347617 AXDND1Q5T1B0 1012 aaPredicted RBP18.14■□□□□ 0.49
HMGA1-202ENST00000347617 HOOK1Q9UJC3 728 aaKnown RBP18.14■□□□□ 0.49
HMGA1-202ENST00000347617 CLIC4Q9Y696 253 aa18.14■□□□□ 0.49
HMGA1-202ENST00000347617 MAP2K7O14733 419 aa18.13■□□□□ 0.49
HMGA1-202ENST00000347617 SEC31AO94979 1220 aaKnown RBP18.13■□□□□ 0.49
HMGA1-202ENST00000347617 FDPSP14324 419 aaKnown RBP18.13■□□□□ 0.49
HMGA1-202ENST00000347617 ACTN2P35609 894 aa18.13■□□□□ 0.49
HMGA1-202ENST00000347617 CCDC102BQ68D86 513 aa18.13■□□□□ 0.49
HMGA1-202ENST00000347617 TMEM139Q8IV31 216 aa18.13■□□□□ 0.49
HMGA1-202ENST00000347617 CEP112Q8N8E3 955 aa18.13■□□□□ 0.49
HMGA1-202ENST00000347617 BAG1Q99933 345 aaPredicted RBP18.13■□□□□ 0.49
HMGA1-202ENST00000347617 LRRC2Q9BYS8 371 aa18.13■□□□□ 0.49
HMGA1-202ENST00000347617 GBP3Q9H0R5 595 aa18.13■□□□□ 0.49
HMGA1-202ENST00000347617 HSD3B7Q9H2F3 369 aa18.13■□□□□ 0.49
HMGA1-202ENST00000347617 DACH1Q9UI36 760 aa18.13■□□□□ 0.49
HMGA1-202ENST00000347617 HPSEQ9Y251 543 aa18.13■□□□□ 0.49
HMGA1-202ENST00000347617 C4AP0C0L4 1744 aa18.13■□□□□ 0.49
HMGA1-202ENST00000347617 SASH3O75995 380 aa18.12■□□□□ 0.49
HMGA1-202ENST00000347617 TRIM37O94972 964 aa18.12■□□□□ 0.49
HMGA1-202ENST00000347617 SYKP43405 635 aa18.12■□□□□ 0.49
HMGA1-202ENST00000347617 TNNT3P45378 269 aaPredicted RBP18.12■□□□□ 0.49
HMGA1-202ENST00000347617 FOSBP53539 338 aa18.12■□□□□ 0.49
HMGA1-202ENST00000347617 GNG11P61952 73 aa18.12■□□□□ 0.49
HMGA1-202ENST00000347617 FKBP4Q02790 459 aaKnown RBP eCLIP18.12■□□□□ 0.49
HMGA1-202ENST00000347617 UBE4AQ14139 1066 aa18.12■□□□□ 0.49
HMGA1-202ENST00000347617 LEKR1Q6ZMV7 388 aa18.12■□□□□ 0.49
HMGA1-202ENST00000347617 CCDC129Q6ZRS4 1044 aa18.12■□□□□ 0.49
HMGA1-202ENST00000347617 FBXW7Q969H0 707 aa18.12■□□□□ 0.49
HMGA1-202ENST00000347617 PARD6BQ9BYG5 372 aa18.12■□□□□ 0.49
HMGA1-202ENST00000347617 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.12■□□□□ 0.492e-7■□□□□ 9.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms