RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 CTNNA3Q9UI47 895 aa10.91□□□□□ -0.66
ATG4A-202ENST00000345734 MYH13Q9UKX3 1938 aa10.91□□□□□ -0.66
ATG4A-202ENST00000345734 HMGB1P09429 215 aaKnown RBP10.91□□□□□ -0.66
ATG4A-202ENST00000345734 IMMTQ16891 758 aaKnown RBP10.91□□□□□ -0.66
ATG4A-202ENST00000345734 FOXD4L6Q3SYB3 417 aaPredicted RBP10.91□□□□□ -0.66
ATG4A-202ENST00000345734 FOXD4L3Q6VB84 417 aaPredicted RBP10.91□□□□□ -0.66
ATG4A-202ENST00000345734 SLF2Q8IX21 1173 aa10.91□□□□□ -0.66
ATG4A-202ENST00000345734 BRF1Q92994 677 aa10.91□□□□□ -0.66
ATG4A-202ENST00000345734 STRBPQ96SI9 672 aaKnown RBP10.91□□□□□ -0.66
ATG4A-202ENST00000345734 MBD4O95243 580 aa10.9□□□□□ -0.66
ATG4A-202ENST00000345734 RFX1P22670 979 aa10.9□□□□□ -0.66
ATG4A-202ENST00000345734 VPS37DQ86XT2 251 aa10.9□□□□□ -0.66
ATG4A-202ENST00000345734 AIDAQ96BJ3 306 aa10.9□□□□□ -0.66
ATG4A-202ENST00000345734 ZFRQ96KR1 1074 aaKnown RBP10.9□□□□□ -0.66
ATG4A-202ENST00000345734 NBPF3Q9H094 633 aa10.9□□□□□ -0.66
ATG4A-202ENST00000345734 LMBRD1Q9NUN5 540 aa10.9□□□□□ -0.66
ATG4A-202ENST00000345734 GNL3LQ9NVN8 582 aaKnown RBP10.9□□□□□ -0.66
ATG4A-202ENST00000345734 TFCP2L1Q9NZI6 479 aa10.9□□□□□ -0.66
ATG4A-202ENST00000345734 WDR33Q9C0J8 1336 aaKnown RBP10.9□□□□□ -0.66
ATG4A-202ENST00000345734 STX6O43752 255 aa10.9□□□□□ -0.67
ATG4A-202ENST00000345734 APPP05067 770 aa10.9□□□□□ -0.67
ATG4A-202ENST00000345734 SERPINB2P05120 415 aa10.9□□□□□ -0.67
ATG4A-202ENST00000345734 DDR1Q08345 913 aa10.9□□□□□ -0.67
ATG4A-202ENST00000345734 ZNF827Q17R98 1081 aa10.9□□□□□ -0.67
ATG4A-202ENST00000345734 CAVIN4Q5BKX8 364 aa10.9□□□□□ -0.67
ATG4A-202ENST00000345734 FBXO33Q7Z6M2 555 aa10.9□□□□□ -0.67
ATG4A-202ENST00000345734 ANKRD2Q9GZV1 360 aa10.9□□□□□ -0.67
ATG4A-202ENST00000345734 ARMT1Q9H993 441 aa10.9□□□□□ -0.67
ATG4A-202ENST00000345734 LRP2BPQ9P2M1 347 aa10.9□□□□□ -0.67
ATG4A-202ENST00000345734 ABCF2Q9UG63 623 aa10.9□□□□□ -0.67
ATG4A-202ENST00000345734 CHD4Q14839 1912 aa10.89□□□□□ -0.67
ATG4A-202ENST00000345734 ZNF213O14771 459 aa10.89□□□□□ -0.67
ATG4A-202ENST00000345734 PRPF40AO75400 957 aaKnown RBP10.89□□□□□ -0.67
ATG4A-202ENST00000345734 APBA3O96018 575 aa10.89□□□□□ -0.67
ATG4A-202ENST00000345734 ZSCAN22P10073 491 aaPredicted RBP10.89□□□□□ -0.67
ATG4A-202ENST00000345734 PTMSP20962 102 aa10.89□□□□□ -0.67
ATG4A-202ENST00000345734 APOBRQ0VD83 1088 aa10.89□□□□□ -0.67
ATG4A-202ENST00000345734 GRAPQ13588 217 aa10.89□□□□□ -0.67
ATG4A-202ENST00000345734 NKX2-3Q8TAU0 364 aa10.89□□□□□ -0.67
ATG4A-202ENST00000345734 GRAPLQ8TC17 118 aaPredicted RBP10.89□□□□□ -0.67
ATG4A-202ENST00000345734 GTF3C6Q969F1 213 aa10.89□□□□□ -0.67
ATG4A-202ENST00000345734 DENND2AQ9ULE3 1009 aa10.89□□□□□ -0.67
ATG4A-202ENST00000345734 CACNA1SQ13698 1873 aa10.89□□□□□ -0.67
ATG4A-202ENST00000345734 PRKAB2O43741 272 aa10.88□□□□□ -0.67
ATG4A-202ENST00000345734 ADGRA1Q86SQ6 560 aa10.88□□□□□ -0.67
ATG4A-202ENST00000345734 TXNRD3Q86VQ6 643 aa10.88□□□□□ -0.67
ATG4A-202ENST00000345734 LCORLQ8N3X6 602 aa10.88□□□□□ -0.67
ATG4A-202ENST00000345734 MIGA1Q8NAN2 632 aa10.88□□□□□ -0.67
ATG4A-202ENST00000345734 PRR7Q8TB68 274 aa10.88□□□□□ -0.67
ATG4A-202ENST00000345734 EPB41L4AQ9HCS5 686 aaPredicted RBP10.88□□□□□ -0.67
ATG4A-202ENST00000345734 MTMR6Q9Y217 621 aa10.88□□□□□ -0.67
ATG4A-202ENST00000345734 PATL2C9JE40 543 aaKnown RBP10.88□□□□□ -0.67
ATG4A-202ENST00000345734 JAK2O60674 1132 aa10.88□□□□□ -0.67
ATG4A-202ENST00000345734 SCRN1Q12765 414 aa10.88□□□□□ -0.67
ATG4A-202ENST00000345734 NR6A1Q15406 480 aa10.88□□□□□ -0.67
ATG4A-202ENST00000345734 SKOR2Q2VWA4 1001 aaPredicted RBP10.88□□□□□ -0.67
ATG4A-202ENST00000345734 TBC1D10CQ8IV04 446 aa10.88□□□□□ -0.67
ATG4A-202ENST00000345734 MB21D2Q8IYB1 491 aaPredicted RBP10.88□□□□□ -0.67
ATG4A-202ENST00000345734 AGXT2Q9BYV1 514 aa10.88□□□□□ -0.67
ATG4A-202ENST00000345734 RAI14Q9P0K7 980 aa10.88□□□□□ -0.67
ATG4A-202ENST00000345734 POLRMTO00411 1230 aaKnown RBP10.87□□□□□ -0.67
ATG4A-202ENST00000345734 CYP7A1P22680 504 aa10.87□□□□□ -0.67
ATG4A-202ENST00000345734 RXRBP28702 533 aa10.87□□□□□ -0.67
ATG4A-202ENST00000345734 HIBADHP31937 336 aaKnown RBP10.87□□□□□ -0.67
ATG4A-202ENST00000345734 ANTXR2P58335 489 aa10.87□□□□□ -0.67
ATG4A-202ENST00000345734 ST5P78524 1137 aa10.87□□□□□ -0.67
ATG4A-202ENST00000345734 IFNL3Q8IZI9 196 aa10.87□□□□□ -0.67
ATG4A-202ENST00000345734 RPGRQ92834 1020 aaKnown RBP10.87□□□□□ -0.67
ATG4A-202ENST00000345734 DDX49Q9Y6V7 483 aaKnown RBP10.87□□□□□ -0.67
ATG4A-202ENST00000345734 IRS2Q9Y4H2 1338 aa10.87□□□□□ -0.67
ATG4A-202ENST00000345734 GSG1L2A8MUP6 293 aa10.87□□□□□ -0.67
ATG4A-202ENST00000345734 PLSCR1O15162 318 aa10.87□□□□□ -0.67
ATG4A-202ENST00000345734 PFKFB2O60825 505 aa10.87□□□□□ -0.67
ATG4A-202ENST00000345734 F13A1P00488 732 aa10.87□□□□□ -0.67
ATG4A-202ENST00000345734 ALX1Q15699 326 aa10.87□□□□□ -0.67
ATG4A-202ENST00000345734 ZNF384Q8TF68 577 aa10.87□□□□□ -0.67
ATG4A-202ENST00000345734 GPR101Q96P66 508 aaPredicted RBP10.87□□□□□ -0.67
ATG4A-202ENST00000345734 SLC4A5Q9BY07 1137 aa10.87□□□□□ -0.67
ATG4A-202ENST00000345734 INCENPQ9NQS7 918 aa10.87□□□□□ -0.67
ATG4A-202ENST00000345734 ANKIB1Q9P2G1 1089 aa10.87□□□□□ -0.67
ATG4A-202ENST00000345734 JAG2Q9Y219 1238 aa10.87□□□□□ -0.67
ATG4A-202ENST00000345734 A0A0U1RQG5 324 aaPredicted RBP10.86□□□□□ -0.67
ATG4A-202ENST00000345734 VPS37CA5D8V6 355 aaPredicted RBP10.86□□□□□ -0.67
ATG4A-202ENST00000345734 PRC1O43663 620 aa10.86□□□□□ -0.67
ATG4A-202ENST00000345734 MCM5P33992 734 aa10.86□□□□□ -0.67
ATG4A-202ENST00000345734 CCT2P78371 535 aaKnown RBP10.86□□□□□ -0.67
ATG4A-202ENST00000345734 CHAF1AQ13111 956 aaPredicted RBP10.86□□□□□ -0.67
ATG4A-202ENST00000345734 KLHL40Q2TBA0 621 aa10.86□□□□□ -0.67
ATG4A-202ENST00000345734 CRY2Q49AN0 593 aa10.86□□□□□ -0.67
ATG4A-202ENST00000345734 GRIPAP1Q4V328 841 aa10.86□□□□□ -0.67
ATG4A-202ENST00000345734 LARP1BQ659C4 914 aaKnown RBP10.86□□□□□ -0.67
ATG4A-202ENST00000345734 COL23A1Q86Y22 540 aaPredicted RBP10.86□□□□□ -0.67
ATG4A-202ENST00000345734 NCOA7Q8NI08 942 aa10.86□□□□□ -0.67
ATG4A-202ENST00000345734 GPT2Q8TD30 523 aa10.86□□□□□ -0.67
ATG4A-202ENST00000345734 NAP1L2Q9ULW6 460 aaPredicted RBP10.86□□□□□ -0.67
ATG4A-202ENST00000345734 SLC27A5Q9Y2P5 690 aa10.86□□□□□ -0.67
ATG4A-202ENST00000345734 SLC4A4Q9Y6R1 1079 aa10.86□□□□□ -0.67
ATG4A-202ENST00000345734 PNPLA7Q6ZV29 1317 aa10.85□□□□□ -0.67
ATG4A-202ENST00000345734 POTEB3A0JP26 581 aa10.85□□□□□ -0.67
ATG4A-202ENST00000345734 SOCS7O14512 581 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms