RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 CDC25BP30305 580 aa22.37■■□□□ 1.17
COL9A3-201ENST00000343916 SYKP43405 635 aa22.37■■□□□ 1.17
COL9A3-201ENST00000343916 FAM182BQ5T319 152 aa22.37■■□□□ 1.17
COL9A3-201ENST00000343916 ZNF654Q8IZM8 581 aa22.37■■□□□ 1.17
COL9A3-201ENST00000343916 PPP6R2O75170 966 aa22.37■■□□□ 1.17
COL9A3-201ENST00000343916 PRDM1O75626 825 aa22.37■■□□□ 1.17
COL9A3-201ENST00000343916 NBPF11Q86T75 865 aa22.37■■□□□ 1.17
COL9A3-201ENST00000343916 MRFAP1L1Q96HT8 127 aa22.37■■□□□ 1.17
COL9A3-201ENST00000343916 TNKSO95271 1327 aa22.37■■□□□ 1.17
COL9A3-201ENST00000343916 NOSTRINQ8IVI9 506 aa22.36■■□□□ 1.17
COL9A3-201ENST00000343916 DIS3L2Q8IYB7 885 aaKnown RBP22.36■■□□□ 1.17
COL9A3-201ENST00000343916 TRIM22Q8IYM9 498 aa22.36■■□□□ 1.17
COL9A3-201ENST00000343916 FANCBQ8NB91 859 aa22.36■■□□□ 1.17
COL9A3-201ENST00000343916 MMP1P03956 469 aa22.36■■□□□ 1.17
COL9A3-201ENST00000343916 EVX2Q03828 476 aa22.36■■□□□ 1.17
COL9A3-201ENST00000343916 SPECC1Q5M775 1068 aa22.36■■□□□ 1.17
COL9A3-201ENST00000343916 CACNA1SQ13698 1873 aa22.36■■□□□ 1.17
COL9A3-201ENST00000343916 CASZ1Q86V15 1759 aa22.35■■□□□ 1.17
COL9A3-201ENST00000343916 FILIP1Q7Z7B0 1213 aa22.35■■□□□ 1.17
COL9A3-201ENST00000343916 CRACR2BQ8N4Y2 399 aaPredicted RBP22.35■■□□□ 1.17
COL9A3-201ENST00000343916 JMYQ8N9B5 988 aa22.35■■□□□ 1.17
COL9A3-201ENST00000343916 MYRIPQ8NFW9 859 aa22.35■■□□□ 1.17
COL9A3-201ENST00000343916 TSC1Q92574 1164 aa22.35■■□□□ 1.17
COL9A3-201ENST00000343916 TFCP2L1Q9NZI6 479 aa22.35■■□□□ 1.17
COL9A3-201ENST00000343916 HPSEQ9Y251 543 aa22.35■■□□□ 1.17
COL9A3-201ENST00000343916 BAZ2AQ9UIF9 1905 aaKnown RBP22.35■■□□□ 1.17
COL9A3-201ENST00000343916 A0A1B0GUL6 1792 aa22.35■■□□□ 1.17
COL9A3-201ENST00000343916 NR5A1Q13285 461 aa22.35■■□□□ 1.17
COL9A3-201ENST00000343916 AMIGO3Q86WK7 504 aa22.35■■□□□ 1.17
COL9A3-201ENST00000343916 ESR2Q92731 530 aa22.35■■□□□ 1.17
COL9A3-201ENST00000343916 NID2Q14112 1375 aa22.35■■□□□ 1.17
COL9A3-201ENST00000343916 TOB1P50616 345 aaPredicted RBP22.34■■□□□ 1.17
COL9A3-201ENST00000343916 SEC23AQ15436 765 aa22.34■■□□□ 1.17
COL9A3-201ENST00000343916 NBPF5PQ86XG9 351 aaPredicted RBP22.34■■□□□ 1.17
COL9A3-201ENST00000343916 FNBP4Q8N3X1 1017 aaPredicted RBP22.34■■□□□ 1.17
COL9A3-201ENST00000343916 WASF1Q92558 559 aa22.34■■□□□ 1.17
COL9A3-201ENST00000343916 CNTNAP4Q9C0A0 1308 aa22.34■■□□□ 1.17
COL9A3-201ENST00000343916 GNPATO15228 680 aa22.34■■□□□ 1.17
COL9A3-201ENST00000343916 RPS8P62241 208 aaKnown RBP22.34■■□□□ 1.17
COL9A3-201ENST00000343916 VPS72Q15906 364 aa22.34■■□□□ 1.17
COL9A3-201ENST00000343916 TMTC2Q8N394 836 aa22.34■■□□□ 1.17
COL9A3-201ENST00000343916 PRIMPOLQ96LW4 560 aa22.34■■□□□ 1.17
COL9A3-201ENST00000343916 SETDB2Q96T68 719 aa22.34■■□□□ 1.17
COL9A3-201ENST00000343916 JAG2Q9Y219 1238 aa22.34■■□□□ 1.17
COL9A3-201ENST00000343916 LRRC8AQ8IWT6 810 aa22.33■■□□□ 1.17
COL9A3-201ENST00000343916 ANAPC4Q9UJX5 808 aa22.33■■□□□ 1.17
COL9A3-201ENST00000343916 MYH2Q9UKX2 1941 aa22.33■■□□□ 1.17
COL9A3-201ENST00000343916 DEXIO95424 95 aa22.33■■□□□ 1.16
COL9A3-201ENST00000343916 NLRP12P59046 1061 aa22.33■■□□□ 1.16
COL9A3-201ENST00000343916 PNOCQ13519 176 aa22.33■■□□□ 1.16
COL9A3-201ENST00000343916 SAFBQ15424 915 aaKnown RBP eCLIP22.33■■□□□ 1.16
COL9A3-201ENST00000343916 SLC10A5Q5PT55 438 aa22.33■■□□□ 1.16
COL9A3-201ENST00000343916 RESP18Q5W5W9 173 aa22.33■■□□□ 1.16
COL9A3-201ENST00000343916 ENAHQ8N8S7 591 aaPredicted RBP22.33■■□□□ 1.16
COL9A3-201ENST00000343916 OXER1Q8TDS5 423 aa22.33■■□□□ 1.16
COL9A3-201ENST00000343916 NLRP3Q96P20 1036 aa22.33■■□□□ 1.16
COL9A3-201ENST00000343916 EIF4ENIF1Q9NRA8 985 aaKnown RBP22.33■■□□□ 1.16
COL9A3-201ENST00000343916 hCG_1642624A0A1W2PR95 340 aa22.32■■□□□ 1.16
COL9A3-201ENST00000343916 GRIN1Q05586 938 aa22.32■■□□□ 1.16
COL9A3-201ENST00000343916 NARFQ9UHQ1 456 aa22.32■■□□□ 1.16
COL9A3-201ENST00000343916 SPATA31A6Q5VVP1 1343 aa22.32■■□□□ 1.16
COL9A3-201ENST00000343916 CCDC196A0A1B0GTZ2 297 aa22.32■■□□□ 1.16
COL9A3-201ENST00000343916 RBM6P78332 1123 aaKnown RBP22.32■■□□□ 1.16
COL9A3-201ENST00000343916 FBXO33Q7Z6M2 555 aa22.32■■□□□ 1.16
COL9A3-201ENST00000343916 SLC51AQ86UW1 340 aa22.32■■□□□ 1.16
COL9A3-201ENST00000343916 C16orf45Q96MC5 204 aaPredicted RBP22.32■■□□□ 1.16
COL9A3-201ENST00000343916 ATP2B1P20020 1258 aa22.31■■□□□ 1.16
COL9A3-201ENST00000343916 PRDX5P30044 214 aa22.31■■□□□ 1.16
COL9A3-201ENST00000343916 MECOMQ03112 1051 aa22.31■■□□□ 1.16
COL9A3-201ENST00000343916 CHAF1AQ13111 956 aaPredicted RBP22.31■■□□□ 1.16
COL9A3-201ENST00000343916 LONRF3Q496Y0 759 aa22.31■■□□□ 1.16
COL9A3-201ENST00000343916 NSUN4Q96CB9 384 aaKnown RBP22.31■■□□□ 1.16
COL9A3-201ENST00000343916 AATFQ9NY61 560 aaKnown RBP eCLIP22.31■■□□□ 1.16
COL9A3-201ENST00000343916 USP17L12C9JPN9 530 aa22.31■■□□□ 1.16
COL9A3-201ENST00000343916 USP17L21D6R901 530 aa22.31■■□□□ 1.16
COL9A3-201ENST00000343916 ZPR1O75312 459 aa22.31■■□□□ 1.16
COL9A3-201ENST00000343916 HSPA1LP34931 641 aa22.31■■□□□ 1.16
COL9A3-201ENST00000343916 CTR9Q6PD62 1173 aa22.31■■□□□ 1.16
COL9A3-201ENST00000343916 TXNRD3Q86VQ6 643 aa22.31■■□□□ 1.16
COL9A3-201ENST00000343916 SHISA4Q96DD7 197 aa22.31■■□□□ 1.16
COL9A3-201ENST00000343916 TIGD1Q96MW7 591 aa22.31■■□□□ 1.16
COL9A3-201ENST00000343916 ZSCAN10Q96SZ4 725 aaPredicted RBP22.31■■□□□ 1.16
COL9A3-201ENST00000343916 MTA3Q9BTC8 594 aa22.31■■□□□ 1.16
COL9A3-201ENST00000343916 KCNH3Q9ULD8 1083 aa22.3■■□□□ 1.16
COL9A3-201ENST00000343916 PCDHB6Q9Y5E3 794 aa22.3■■□□□ 1.16
COL9A3-201ENST00000343916 SCN7AQ01118 1682 aa22.3■■□□□ 1.16
COL9A3-201ENST00000343916 CUTAO60888 179 aa22.3■■□□□ 1.16
COL9A3-201ENST00000343916 RPS6KA4O75676 772 aa22.3■■□□□ 1.16
COL9A3-201ENST00000343916 KRI1Q8N9T8 703 aaKnown RBP22.3■■□□□ 1.16
COL9A3-201ENST00000343916 BPIFA3Q9BQP9 254 aa22.3■■□□□ 1.16
COL9A3-201ENST00000343916 BRIP1Q9BX63 1249 aa22.3■■□□□ 1.16
COL9A3-201ENST00000343916 NCAPHQ15003 741 aa22.29■■□□□ 1.16
COL9A3-201ENST00000343916 METTL16Q86W50 562 aaKnown RBP22.29■■□□□ 1.16
COL9A3-201ENST00000343916 NYXQ9GZU5 481 aa22.29■■□□□ 1.16
COL9A3-201ENST00000343916 FOXP1Q9H334 677 aaPredicted RBP22.29■■□□□ 1.16
COL9A3-201ENST00000343916 FOXN1O15353 648 aa22.29■■□□□ 1.16
COL9A3-201ENST00000343916 SMC2O95347 1197 aa22.29■■□□□ 1.16
COL9A3-201ENST00000343916 HIBADHP31937 336 aaKnown RBP22.29■■□□□ 1.16
COL9A3-201ENST00000343916 IFIT1BQ5T764 474 aaKnown RBP22.29■■□□□ 1.16
COL9A3-201ENST00000343916 MTERF4Q7Z6M4 381 aaKnown RBP22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms