RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 SNED1Q8TER0 1413 aa15.66■□□□□ 0.1
HMGB1-202ENST00000339872 CDC27P30260 824 aa15.66■□□□□ 0.1
HMGB1-202ENST00000339872 ADD1P35611 737 aaKnown RBP15.66■□□□□ 0.1
HMGB1-202ENST00000339872 PDE4BQ07343 736 aa15.66■□□□□ 0.1
HMGB1-202ENST00000339872 C12orf60Q5U649 245 aa15.66■□□□□ 0.1
HMGB1-202ENST00000339872 PODNQ7Z5L7 613 aa15.66■□□□□ 0.1
HMGB1-202ENST00000339872 GPT2Q8TD30 523 aa15.66■□□□□ 0.1
HMGB1-202ENST00000339872 TTF2Q9UNY4 1162 aaKnown RBP15.66■□□□□ 0.1
HMGB1-202ENST00000339872 DAGLAQ9Y4D2 1042 aa15.66■□□□□ 0.1
HMGB1-202ENST00000339872 MYH1P12882 1939 aa15.65■□□□□ 0.1
HMGB1-202ENST00000339872 KIF13BQ9NQT8 1826 aa15.65■□□□□ 0.1
HMGB1-202ENST00000339872 C21orf2O43822 256 aa15.65■□□□□ 0.1
HMGB1-202ENST00000339872 ORC4O43929 436 aa15.65■□□□□ 0.1
HMGB1-202ENST00000339872 FAM173BQ6P4H8 233 aa15.65■□□□□ 0.1
HMGB1-202ENST00000339872 CPLX2Q6PUV4 134 aaKnown RBP15.65■□□□□ 0.1
HMGB1-202ENST00000339872 IQCA1Q86XH1 822 aa15.65■□□□□ 0.1
HMGB1-202ENST00000339872 TMTC2Q8N394 836 aa15.65■□□□□ 0.1
HMGB1-202ENST00000339872 ZSCAN10Q96SZ4 725 aaPredicted RBP15.65■□□□□ 0.1
HMGB1-202ENST00000339872 ORC3Q9UBD5 711 aaPredicted RBP15.65■□□□□ 0.1
HMGB1-202ENST00000339872 ZNF646O15015 1829 aaPredicted RBP15.65■□□□□ 0.1
HMGB1-202ENST00000339872 ECE2O60344 883 aa15.65■□□□□ 0.1
HMGB1-202ENST00000339872 CDKL5O76039 1030 aa15.65■□□□□ 0.1
HMGB1-202ENST00000339872 RHBDL3P58872 404 aa15.65■□□□□ 0.1
HMGB1-202ENST00000339872 SEC23AQ15436 765 aa15.65■□□□□ 0.1
HMGB1-202ENST00000339872 TMEM87AQ8NBN3 555 aa15.65■□□□□ 0.1
HMGB1-202ENST00000339872 SAP30BPQ9UHR5 308 aaKnown RBP15.65■□□□□ 0.1
HMGB1-202ENST00000339872 ROBO3Q96MS0 1386 aa15.64■□□□□ 0.09
HMGB1-202ENST00000339872 GUCY1B3Q02153 619 aa15.64■□□□□ 0.09
HMGB1-202ENST00000339872 RESTQ13127 1097 aa15.64■□□□□ 0.09
HMGB1-202ENST00000339872 AOC3Q16853 763 aa15.64■□□□□ 0.09
HMGB1-202ENST00000339872 CC2D2BQ6DHV5 1058 aa15.64■□□□□ 0.09
HMGB1-202ENST00000339872 TTLL6Q8N841 843 aa15.64■□□□□ 0.09
HMGB1-202ENST00000339872 ENAHQ8N8S7 591 aaPredicted RBP15.64■□□□□ 0.09
HMGB1-202ENST00000339872 KCNQ5Q9NR82 932 aa15.64■□□□□ 0.09
HMGB1-202ENST00000339872 NID2Q14112 1375 aa15.64■□□□□ 0.09
HMGB1-202ENST00000339872 FLT1P17948 1338 aa15.64■□□□□ 0.09
HMGB1-202ENST00000339872 ZBTB7AO95365 584 aa15.63■□□□□ 0.09
HMGB1-202ENST00000339872 MBD3O95983 291 aa15.63■□□□□ 0.09
HMGB1-202ENST00000339872 POLR3DP05423 398 aaPredicted RBP15.63■□□□□ 0.09
HMGB1-202ENST00000339872 KRT85P78386 507 aa15.63■□□□□ 0.09
HMGB1-202ENST00000339872 FAM47AQ5JRC9 791 aa15.63■□□□□ 0.09
HMGB1-202ENST00000339872 CAVIN1Q6NZI2 390 aaKnown RBP15.63■□□□□ 0.09
HMGB1-202ENST00000339872 ZNF654Q8IZM8 581 aa15.63■□□□□ 0.09
HMGB1-202ENST00000339872 DYNLL2Q96FJ2 89 aa15.63■□□□□ 0.09
HMGB1-202ENST00000339872 GADD45BO75293 160 aaPredicted RBP15.63■□□□□ 0.09
HMGB1-202ENST00000339872 SCNN1DP51172 638 aa15.63■□□□□ 0.09
HMGB1-202ENST00000339872 IFIT1BQ5T764 474 aaKnown RBP15.63■□□□□ 0.09
HMGB1-202ENST00000339872 ZSCAN16Q9H4T2 348 aaPredicted RBP15.63■□□□□ 0.09
HMGB1-202ENST00000339872 FAM217BQ9NTX9 383 aaPredicted RBP15.63■□□□□ 0.09
HMGB1-202ENST00000339872 TSPY2A6NKD2 308 aa15.62■□□□□ 0.09
HMGB1-202ENST00000339872 DPEP1P16444 411 aa15.62■□□□□ 0.09
HMGB1-202ENST00000339872 RTN1Q16799 776 aa15.62■□□□□ 0.09
HMGB1-202ENST00000339872 CSPP1Q1MSJ5 1256 aa15.62■□□□□ 0.09
HMGB1-202ENST00000339872 SUPT20HQ8NEM7 779 aa15.62■□□□□ 0.09
HMGB1-202ENST00000339872 NUP133Q8WUM0 1156 aa15.62■□□□□ 0.09
HMGB1-202ENST00000339872 PHKBQ93100 1093 aa15.62■□□□□ 0.09
HMGB1-202ENST00000339872 C8orf76Q96K31 380 aa15.62■□□□□ 0.09
HMGB1-202ENST00000339872 PLCD1P51178 756 aa15.62■□□□□ 0.09
HMGB1-202ENST00000339872 KIAA2012Q0VF49 1180 aa15.62■□□□□ 0.09
HMGB1-202ENST00000339872 NTRK3Q16288 839 aa15.62■□□□□ 0.09
HMGB1-202ENST00000339872 NMT2O60551 498 aa15.61■□□□□ 0.09
HMGB1-202ENST00000339872 IARSP41252 1262 aaKnown RBP15.61■□□□□ 0.09
HMGB1-202ENST00000339872 RCAN1P53805 252 aa15.61■□□□□ 0.09
HMGB1-202ENST00000339872 STRIP1Q5VSL9 837 aa15.61■□□□□ 0.09
HMGB1-202ENST00000339872 TEKT1Q969V4 418 aa15.61■□□□□ 0.09
HMGB1-202ENST00000339872 MKNK2Q9HBH9 465 aa15.61■□□□□ 0.09
HMGB1-202ENST00000339872 PPIP5K2O43314 1243 aa15.61■□□□□ 0.09
HMGB1-202ENST00000339872 KCNA3P22001 575 aa15.61■□□□□ 0.09
HMGB1-202ENST00000339872 TPRNQ4KMQ1 711 aa15.61■□□□□ 0.09
HMGB1-202ENST00000339872 CCDC93Q567U6 631 aa15.61■□□□□ 0.09
HMGB1-202ENST00000339872 OTUD7BQ6GQQ9 843 aa15.61■□□□□ 0.09
HMGB1-202ENST00000339872 RBM27Q9P2N5 1060 aaKnown RBP15.61■□□□□ 0.09
HMGB1-202ENST00000339872 USP17L3A6NCW0 530 aa15.6■□□□□ 0.09
HMGB1-202ENST00000339872 USP17L4A6NCW7 530 aa15.6■□□□□ 0.09
HMGB1-202ENST00000339872 PICALMQ13492 652 aa15.6■□□□□ 0.09
HMGB1-202ENST00000339872 DACT2Q5SW24 774 aa15.6■□□□□ 0.09
HMGB1-202ENST00000339872 USP17L1Q7RTZ2 530 aa15.6■□□□□ 0.09
HMGB1-202ENST00000339872 KIAA0825Q8IV33 1275 aa15.6■□□□□ 0.09
HMGB1-202ENST00000339872 SLC44A5Q8NCS7 719 aa15.6■□□□□ 0.09
HMGB1-202ENST00000339872 ATF5Q9Y2D1 282 aaPredicted RBP15.6■□□□□ 0.09
HMGB1-202ENST00000339872 CCDC196A0A1B0GTZ2 297 aa15.6■□□□□ 0.09
HMGB1-202ENST00000339872 CATIPQ7Z7H3 387 aa15.6■□□□□ 0.09
HMGB1-202ENST00000339872 FANCBQ8NB91 859 aa15.6■□□□□ 0.09
HMGB1-202ENST00000339872 FBXO18Q8NFZ0 1043 aa15.6■□□□□ 0.09
HMGB1-202ENST00000339872 AIFM3Q96NN9 605 aa15.6■□□□□ 0.09
HMGB1-202ENST00000339872 ALG1Q9BT22 464 aa15.6■□□□□ 0.09
HMGB1-202ENST00000339872 SLC26A6Q9BXS9 759 aa15.6■□□□□ 0.09
HMGB1-202ENST00000339872 GJB4Q9NTQ9 266 aa15.6■□□□□ 0.09
HMGB1-202ENST00000339872 TFIP11Q9UBB9 837 aaKnown RBP15.6■□□□□ 0.09
HMGB1-202ENST00000339872 TAOK2Q9UL54 1235 aa15.6■□□□□ 0.09
HMGB1-202ENST00000339872 MYH6P13533 1939 aa15.59■□□□□ 0.09
HMGB1-202ENST00000339872 GOLGB1Q14789 3259 aaKnown RBP15.59■□□□□ 0.09
HMGB1-202ENST00000339872 IFNAR1P17181 557 aa15.59■□□□□ 0.09
HMGB1-202ENST00000339872 UBE2HP62256 183 aa15.59■□□□□ 0.09
HMGB1-202ENST00000339872 FKBP1AP62942 108 aaKnown RBP15.59■□□□□ 0.09
HMGB1-202ENST00000339872 TFAP4Q01664 338 aa15.59■□□□□ 0.09
HMGB1-202ENST00000339872 SSRP1Q08945 709 aaKnown RBP15.59■□□□□ 0.09
HMGB1-202ENST00000339872 HHIPL2Q6UWX4 724 aa15.59■□□□□ 0.09
HMGB1-202ENST00000339872 RTKN2Q8IZC4 609 aa15.59■□□□□ 0.09
HMGB1-202ENST00000339872 PSME4Q14997 1843 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms