RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 NPHP1O15259 732 aa18.56■□□□□ 0.56
USHBP1-202ENST00000324554 PTPAQ15257 358 aa18.56■□□□□ 0.56
USHBP1-202ENST00000324554 TRAPPC3LQ5T215 181 aa18.56■□□□□ 0.56
USHBP1-202ENST00000324554 CCAR2Q8N163 923 aaKnown RBP18.56■□□□□ 0.56
USHBP1-202ENST00000324554 TAOK2Q9UL54 1235 aa18.56■□□□□ 0.56
USHBP1-202ENST00000324554 IFIT3O14879 490 aaKnown RBP18.55■□□□□ 0.56
USHBP1-202ENST00000324554 PPP6R2O75170 966 aa18.55■□□□□ 0.56
USHBP1-202ENST00000324554 AKNAD1Q5T1N1 836 aa18.55■□□□□ 0.56
USHBP1-202ENST00000324554 MAP3K14Q99558 947 aa18.55■□□□□ 0.56
USHBP1-202ENST00000324554 XPO4Q9C0E2 1151 aaKnown RBP18.55■□□□□ 0.56
USHBP1-202ENST00000324554 OSBPL5Q9H0X9 879 aaPredicted RBP18.55■□□□□ 0.56
USHBP1-202ENST00000324554 CNNM2Q9H8M5 875 aa18.55■□□□□ 0.56
USHBP1-202ENST00000324554 SLC12A7Q9Y666 1083 aa18.55■□□□□ 0.56
USHBP1-202ENST00000324554 BRWD3Q6RI45 1802 aa18.55■□□□□ 0.56
USHBP1-202ENST00000324554 UBE2Q2LH0YL09 131 aa18.55■□□□□ 0.56
USHBP1-202ENST00000324554 PRKAB2O43741 272 aa18.55■□□□□ 0.56
USHBP1-202ENST00000324554 IGHMBP2P38935 993 aaKnown RBP18.55■□□□□ 0.56
USHBP1-202ENST00000324554 NLRP12P59046 1061 aa18.55■□□□□ 0.56
USHBP1-202ENST00000324554 GNL2Q13823 731 aaKnown RBP18.55■□□□□ 0.56
USHBP1-202ENST00000324554 IFNKQ9P0W0 207 aa18.55■□□□□ 0.56
USHBP1-202ENST00000324554 HPSEQ9Y251 543 aa18.55■□□□□ 0.56
USHBP1-202ENST00000324554 BCAMP50895 628 aa18.54■□□□□ 0.56
USHBP1-202ENST00000324554 NCAPHQ15003 741 aa18.54■□□□□ 0.56
USHBP1-202ENST00000324554 LCORLQ8N3X6 602 aa18.54■□□□□ 0.56
USHBP1-202ENST00000324554 TIGD1Q96MW7 591 aa18.54■□□□□ 0.56
USHBP1-202ENST00000324554 STK36Q9NRP7 1315 aa18.54■□□□□ 0.56
USHBP1-202ENST00000324554 BCORQ6W2J9 1755 aa18.54■□□□□ 0.56
USHBP1-202ENST00000324554 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.54■□□□□ 0.56
USHBP1-202ENST00000324554 SYKP43405 635 aa18.54■□□□□ 0.56
USHBP1-202ENST00000324554 CHRNDQ07001 517 aa18.54■□□□□ 0.56
USHBP1-202ENST00000324554 TRIM29Q14134 588 aa18.54■□□□□ 0.56
USHBP1-202ENST00000324554 SHC4Q6S5L8 630 aa18.54■□□□□ 0.56
USHBP1-202ENST00000324554 KRT23Q9C075 422 aa18.54■□□□□ 0.56
USHBP1-202ENST00000324554 IQSEC3Q9UPP2 1182 aaPredicted RBP18.54■□□□□ 0.56
USHBP1-202ENST00000324554 ZNF831Q5JPB2 1677 aa18.53■□□□□ 0.56
USHBP1-202ENST00000324554 SMC2O95347 1197 aa18.53■□□□□ 0.56
USHBP1-202ENST00000324554 GSDMDP57764 484 aa18.53■□□□□ 0.56
USHBP1-202ENST00000324554 ISM2Q6H9L7 571 aa18.53■□□□□ 0.56
USHBP1-202ENST00000324554 ARMCX5Q6P1M9 558 aa18.53■□□□□ 0.56
USHBP1-202ENST00000324554 MFSD6Q6ZSS7 791 aa18.53■□□□□ 0.56
USHBP1-202ENST00000324554 SLC51AQ86UW1 340 aa18.53■□□□□ 0.56
USHBP1-202ENST00000324554 JMYQ8N9B5 988 aa18.53■□□□□ 0.56
USHBP1-202ENST00000324554 CELF1Q92879 486 aaKnown RBP18.53■□□□□ 0.56
USHBP1-202ENST00000324554 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.53■□□□□ 0.56
USHBP1-202ENST00000324554 SLC26A6Q9BXS9 759 aa18.53■□□□□ 0.56
USHBP1-202ENST00000324554 PNPLA7Q6ZV29 1317 aa18.53■□□□□ 0.56
USHBP1-202ENST00000324554 NID2Q14112 1375 aa18.53■□□□□ 0.56
USHBP1-202ENST00000324554 GNAT2P19087 354 aa18.53■□□□□ 0.56
USHBP1-202ENST00000324554 KCND1Q9NSA2 647 aa18.53■□□□□ 0.56
USHBP1-202ENST00000324554 IMPACTQ9P2X3 320 aa18.53■□□□□ 0.56
USHBP1-202ENST00000324554 TAF1LQ8IZX4 1826 aa18.52■□□□□ 0.56
USHBP1-202ENST00000324554 FAM237AA0A1B0GTK4 181 aa18.52■□□□□ 0.56
USHBP1-202ENST00000324554 FMNL1O95466 1100 aaPredicted RBP18.52■□□□□ 0.56
USHBP1-202ENST00000324554 TDO2P48775 406 aa18.52■□□□□ 0.56
USHBP1-202ENST00000324554 DMTNQ08495 405 aa18.52■□□□□ 0.56
USHBP1-202ENST00000324554 SSRP1Q08945 709 aaKnown RBP18.52■□□□□ 0.56
USHBP1-202ENST00000324554 STAG1Q8WVM7 1258 aa18.52■□□□□ 0.56
USHBP1-202ENST00000324554 ZNF215Q9UL58 517 aaPredicted RBP18.52■□□□□ 0.56
USHBP1-202ENST00000324554 SLC4A4Q9Y6R1 1079 aa18.52■□□□□ 0.56
USHBP1-202ENST00000324554 RTL9Q8NET4 1388 aa18.52■□□□□ 0.56
USHBP1-202ENST00000324554 GOLGB1Q14789 3259 aaKnown RBP18.52■□□□□ 0.56
USHBP1-202ENST00000324554 IFNAR1P17181 557 aa18.52■□□□□ 0.55
USHBP1-202ENST00000324554 E4F1Q66K89 784 aaPredicted RBP18.52■□□□□ 0.55
USHBP1-202ENST00000324554 TMC6Q7Z403 805 aa18.52■□□□□ 0.55
USHBP1-202ENST00000324554 NACAP1Q9BZK3 213 aa18.52■□□□□ 0.55
USHBP1-202ENST00000324554 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.52■□□□□ 0.55
USHBP1-202ENST00000324554 LY75O60449 1722 aa18.51■□□□□ 0.55
USHBP1-202ENST00000324554 RRP12Q5JTH9 1297 aaKnown RBP18.51■□□□□ 0.55
USHBP1-202ENST00000324554 RESP18Q5W5W9 173 aa18.51■□□□□ 0.55
USHBP1-202ENST00000324554 PROM2Q8N271 834 aa18.51■□□□□ 0.55
USHBP1-202ENST00000324554 CLIC6Q96NY7 704 aa18.51■□□□□ 0.55
USHBP1-202ENST00000324554 HSD3B7Q9H2F3 369 aa18.51■□□□□ 0.55
USHBP1-202ENST00000324554 TUBE1Q9UJT0 475 aa18.51■□□□□ 0.55
USHBP1-202ENST00000324554 GUCY1A2P33402 732 aa18.51■□□□□ 0.55
USHBP1-202ENST00000324554 ANKRD18AQ8IVF6 992 aa18.51■□□□□ 0.55
USHBP1-202ENST00000324554 MIGA1Q8NAN2 632 aa18.51■□□□□ 0.55
USHBP1-202ENST00000324554 ZKSCAN3Q9BRR0 538 aa18.51■□□□□ 0.55
USHBP1-202ENST00000324554 LMOD1P29536 600 aaPredicted RBP18.5■□□□□ 0.55
USHBP1-202ENST00000324554 NFIXQ14938 502 aa18.5■□□□□ 0.55
USHBP1-202ENST00000324554 TPTE2Q6XPS3 522 aa18.5■□□□□ 0.55
USHBP1-202ENST00000324554 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.5■□□□□ 0.55
USHBP1-202ENST00000324554 V9GYY5 206 aaPredicted RBP18.5■□□□□ 0.55
USHBP1-202ENST00000324554 ATP1A3P13637 1013 aa18.5■□□□□ 0.55
USHBP1-202ENST00000324554 NOSTRINQ8IVI9 506 aa18.5■□□□□ 0.55
USHBP1-202ENST00000324554 WASF1Q92558 559 aa18.5■□□□□ 0.55
USHBP1-202ENST00000324554 FEZ1Q99689 392 aa18.5■□□□□ 0.55
USHBP1-202ENST00000324554 TOMM22Q9NS69 142 aa18.5■□□□□ 0.55
USHBP1-202ENST00000324554 LAMB2P55268 1798 aa18.49■□□□□ 0.55
USHBP1-202ENST00000324554 TPM4P67936 248 aa18.49■□□□□ 0.55
USHBP1-202ENST00000324554 WTAPQ15007 396 aa18.49■□□□□ 0.55
USHBP1-202ENST00000324554 SART3Q15020 963 aaKnown RBP18.49■□□□□ 0.55
USHBP1-202ENST00000324554 RTN1Q16799 776 aa18.49■□□□□ 0.55
USHBP1-202ENST00000324554 NLRP3Q96P20 1036 aa18.49■□□□□ 0.55
USHBP1-202ENST00000324554 CDC5LQ99459 802 aaKnown RBP18.49■□□□□ 0.55
USHBP1-202ENST00000324554 LRP2BPQ9P2M1 347 aa18.49■□□□□ 0.55
USHBP1-202ENST00000324554 CGNQ9P2M7 1197 aaKnown RBP18.49■□□□□ 0.55
USHBP1-202ENST00000324554 IKBKBO14920 756 aa18.49■□□□□ 0.55
USHBP1-202ENST00000324554 CUTAO60888 179 aa18.49■□□□□ 0.55
USHBP1-202ENST00000324554 MMP1P03956 469 aa18.49■□□□□ 0.55
USHBP1-202ENST00000324554 PNOCQ13519 176 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms