RNA–Protein interactions for RNA: ENST00000318023.11

CAPN3-201, Transcript of calpain 3, humanhuman

TSL 5 BASIC

Gene CAPN3, Length 3,172 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-201ENST00000318023 EYA2O00167 538 aa10.85□□□□□ -0.67
CAPN3-201ENST00000318023 SMC1AQ14683 1233 aaKnown RBP10.85□□□□□ -0.67
CAPN3-201ENST00000318023 FILIP1Q7Z7B0 1213 aa10.85□□□□□ -0.67
CAPN3-201ENST00000318023 SNRKQ9NRH2 765 aa10.85□□□□□ -0.67
CAPN3-201ENST00000318023 NDUFB9Q9Y6M9 179 aa10.85□□□□□ -0.67
CAPN3-201ENST00000318023 RAD50Q92878 1312 aa10.85□□□□□ -0.67
CAPN3-201ENST00000318023 CHD4Q14839 1912 aa10.85□□□□□ -0.67
CAPN3-201ENST00000318023 LRRC8AQ8IWT6 810 aa10.85□□□□□ -0.67
CAPN3-201ENST00000318023 GPC2Q8N158 579 aa10.85□□□□□ -0.67
CAPN3-201ENST00000318023 TMEM87AQ8NBN3 555 aa10.85□□□□□ -0.67
CAPN3-201ENST00000318023 ANKRD2Q9GZV1 360 aa10.85□□□□□ -0.67
CAPN3-201ENST00000318023 RIC1Q4ADV7 1423 aa10.84□□□□□ -0.67
CAPN3-201ENST00000318023 LTBP3Q9NS15 1303 aa10.84□□□□□ -0.67
CAPN3-201ENST00000318023 TOMM70O94826 608 aa10.84□□□□□ -0.67
CAPN3-201ENST00000318023 G3BP1Q13283 466 aaKnown RBP eCLIP10.84□□□□□ -0.67
CAPN3-201ENST00000318023 PLA2G4DQ86XP0 818 aa10.84□□□□□ -0.67
CAPN3-201ENST00000318023 PLEKHA4Q9H4M7 779 aa10.84□□□□□ -0.67
CAPN3-201ENST00000318023 CD209Q9NNX6 404 aa10.84□□□□□ -0.67
CAPN3-201ENST00000318023 ADAM21Q9UKJ8 722 aa10.84□□□□□ -0.67
CAPN3-201ENST00000318023 RIPOR2Q9Y4F9 1068 aa10.84□□□□□ -0.67
CAPN3-201ENST00000318023 CCDC88AQ3V6T2 1871 aa10.84□□□□□ -0.67
CAPN3-201ENST00000318023 RTL9Q8NET4 1388 aa10.84□□□□□ -0.67
CAPN3-201ENST00000318023 ERC2O15083 957 aa10.84□□□□□ -0.67
CAPN3-201ENST00000318023 MAP2K2P36507 400 aa10.84□□□□□ -0.67
CAPN3-201ENST00000318023 DNM1Q05193 864 aaKnown RBP10.84□□□□□ -0.67
CAPN3-201ENST00000318023 RNF20Q5VTR2 975 aa10.84□□□□□ -0.67
CAPN3-201ENST00000318023 PI16Q6UXB8 463 aa10.84□□□□□ -0.67
CAPN3-201ENST00000318023 TMC4Q7Z404 712 aa10.84□□□□□ -0.67
CAPN3-201ENST00000318023 CCDC8Q9H0W5 538 aaPredicted RBP10.84□□□□□ -0.67
CAPN3-201ENST00000318023 BRCA1P38398 1863 aaKnown RBP10.84□□□□□ -0.67
CAPN3-201ENST00000318023 H7C1D1 291 aa10.83□□□□□ -0.68
CAPN3-201ENST00000318023 ACTN2P35609 894 aa10.83□□□□□ -0.68
CAPN3-201ENST00000318023 RFX5P48382 616 aaPredicted RBP10.83□□□□□ -0.68
CAPN3-201ENST00000318023 PPP2R5AQ15172 486 aa10.83□□□□□ -0.68
CAPN3-201ENST00000318023 RABL6Q3YEC7 729 aaPredicted RBP10.83□□□□□ -0.68
CAPN3-201ENST00000318023 ANKRD20A12PQ8NF67 263 aa10.83□□□□□ -0.68
CAPN3-201ENST00000318023 GLIS2Q9BZE0 524 aaPredicted RBP10.83□□□□□ -0.68
CAPN3-201ENST00000318023 ARGLU1Q9NWB6 273 aaPredicted RBP10.83□□□□□ -0.68
CAPN3-201ENST00000318023 ABCF2Q9UG63 623 aa10.83□□□□□ -0.68
CAPN3-201ENST00000318023 FZD1Q9UP38 647 aa10.83□□□□□ -0.68
CAPN3-201ENST00000318023 ANKRD36CQ5JPF3 1778 aa10.83□□□□□ -0.68
CAPN3-201ENST00000318023 CLRN2A0PK11 232 aa10.83□□□□□ -0.68
CAPN3-201ENST00000318023 PDE8BO95263 885 aa10.83□□□□□ -0.68
CAPN3-201ENST00000318023 HIBADHP31937 336 aaKnown RBP10.83□□□□□ -0.68
CAPN3-201ENST00000318023 TNIP1Q15025 636 aa10.83□□□□□ -0.68
CAPN3-201ENST00000318023 SKIDA1Q1XH10 827 aa10.83□□□□□ -0.68
CAPN3-201ENST00000318023 MCTP2Q6DN12 878 aa10.83□□□□□ -0.68
CAPN3-201ENST00000318023 SGSM3Q96HU1 749 aa10.83□□□□□ -0.68
CAPN3-201ENST00000318023 RTFDC1Q9BY42 306 aaPredicted RBP10.83□□□□□ -0.68
CAPN3-201ENST00000318023 USP17L3A6NCW0 530 aa10.83□□□□□ -0.68
CAPN3-201ENST00000318023 USP17L4A6NCW7 530 aa10.83□□□□□ -0.68
CAPN3-201ENST00000318023 GRIK5Q16478 980 aa10.83□□□□□ -0.68
CAPN3-201ENST00000318023 CWC27Q6UX04 472 aaKnown RBP10.83□□□□□ -0.68
CAPN3-201ENST00000318023 LEKR1Q6ZMV7 388 aa10.83□□□□□ -0.68
CAPN3-201ENST00000318023 USP17L1Q7RTZ2 530 aa10.83□□□□□ -0.68
CAPN3-201ENST00000318023 ATG9AQ7Z3C6 839 aa10.83□□□□□ -0.68
CAPN3-201ENST00000318023 CCAR2Q8N163 923 aaKnown RBP10.83□□□□□ -0.68
CAPN3-201ENST00000318023 GPRC5DQ9NZD1 345 aa10.83□□□□□ -0.68
CAPN3-201ENST00000318023 MKRN1Q9UHC7 482 aaKnown RBP10.83□□□□□ -0.68
CAPN3-201ENST00000318023 DDX60Q8IY21 1712 aaKnown RBP10.82□□□□□ -0.68
CAPN3-201ENST00000318023 IQCA1LA6NCM1 817 aa10.82□□□□□ -0.68
CAPN3-201ENST00000318023 ZSCAN22P10073 491 aaPredicted RBP10.82□□□□□ -0.68
CAPN3-201ENST00000318023 HIRAP54198 1017 aaPredicted RBP10.82□□□□□ -0.68
CAPN3-201ENST00000318023 MAP3K11Q16584 847 aa10.82□□□□□ -0.68
CAPN3-201ENST00000318023 UBXN4Q92575 508 aa10.82□□□□□ -0.68
CAPN3-201ENST00000318023 INTS4Q96HW7 963 aaKnown RBP10.82□□□□□ -0.68
CAPN3-201ENST00000318023 FAM84BQ96KN1 310 aaPredicted RBP10.82□□□□□ -0.68
CAPN3-201ENST00000318023 LEMD3Q9Y2U8 911 aa10.82□□□□□ -0.68
CAPN3-201ENST00000318023 UTYO14607 1347 aa10.82□□□□□ -0.68
CAPN3-201ENST00000318023 TBC1D8O95759 1140 aa10.82□□□□□ -0.68
CAPN3-201ENST00000318023 PHKA1P46020 1223 aa10.82□□□□□ -0.68
CAPN3-201ENST00000318023 CACNB3P54284 484 aa10.82□□□□□ -0.68
CAPN3-201ENST00000318023 NBPF9Q3BBW0 867 aa10.82□□□□□ -0.68
CAPN3-201ENST00000318023 GRIPAP1Q4V328 841 aa10.82□□□□□ -0.68
CAPN3-201ENST00000318023 CAVIN4Q5BKX8 364 aa10.82□□□□□ -0.68
CAPN3-201ENST00000318023 MFSD14BQ5SR56 506 aa10.82□□□□□ -0.68
CAPN3-201ENST00000318023 TSHZ3Q63HK5 1081 aa10.82□□□□□ -0.68
CAPN3-201ENST00000318023 ORC3Q9UBD5 711 aaPredicted RBP10.82□□□□□ -0.68
CAPN3-201ENST00000318023 CCDC189A1A4V9 331 aa10.81□□□□□ -0.68
CAPN3-201ENST00000318023 CCDC69A6NI79 296 aa10.81□□□□□ -0.68
CAPN3-201ENST00000318023 IFIT1P09914 478 aaKnown RBP10.81□□□□□ -0.68
CAPN3-201ENST00000318023 GSCP56915 257 aaPredicted RBP10.81□□□□□ -0.68
CAPN3-201ENST00000318023 SNW1Q13573 536 aaKnown RBP10.81□□□□□ -0.68
CAPN3-201ENST00000318023 ZNF804AQ7Z570 1209 aa10.81□□□□□ -0.68
CAPN3-201ENST00000318023 CNTROBQ8N137 903 aa10.81□□□□□ -0.68
CAPN3-201ENST00000318023 OGFOD1Q8N543 542 aa10.81□□□□□ -0.68
CAPN3-201ENST00000318023 DNAJC25Q9H1X3 360 aa10.81□□□□□ -0.68
CAPN3-201ENST00000318023 VEZTQ9HBM0 779 aa10.81□□□□□ -0.68
CAPN3-201ENST00000318023 ADM5C9JUS6 153 aa10.81□□□□□ -0.68
CAPN3-201ENST00000318023 LIG1P18858 919 aa10.81□□□□□ -0.68
CAPN3-201ENST00000318023 NUP62CLQ9H1M0 184 aa10.81□□□□□ -0.68
CAPN3-201ENST00000318023 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.81□□□□□ -0.68
CAPN3-201ENST00000318023 H3BQF6 201 aa10.81□□□□□ -0.68
CAPN3-201ENST00000318023 SYT1P21579 422 aa10.81□□□□□ -0.68
CAPN3-201ENST00000318023 MCM2P49736 904 aa10.81□□□□□ -0.68
CAPN3-201ENST00000318023 CERS5Q8N5B7 392 aa10.81□□□□□ -0.68
CAPN3-201ENST00000318023 PPM1EQ8WY54 764 aa10.81□□□□□ -0.68
CAPN3-201ENST00000318023 STX6O43752 255 aa10.8□□□□□ -0.68
CAPN3-201ENST00000318023 USP17L8P0C7I0 530 aa10.8□□□□□ -0.68
CAPN3-201ENST00000318023 CEP85Q6P2H3 762 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms