RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 GNL3LQ9NVN8 582 aaKnown RBP12.01□□□□□ -0.49
COL3A1-202ENST00000317840 CCNL1Q9UK58 526 aaPredicted RBP12.01□□□□□ -0.49
COL3A1-202ENST00000317840 CEP131Q9UPN4 1083 aa12.01□□□□□ -0.49
COL3A1-202ENST00000317840 PPP6R2O75170 966 aa12□□□□□ -0.49
COL3A1-202ENST00000317840 NR5A1Q13285 461 aa12□□□□□ -0.49
COL3A1-202ENST00000317840 MAPK8IP2Q13387 824 aaPredicted RBP12□□□□□ -0.49
COL3A1-202ENST00000317840 TAF3Q5VWG9 929 aa12□□□□□ -0.49
COL3A1-202ENST00000317840 TIGD1Q96MW7 591 aa12□□□□□ -0.49
COL3A1-202ENST00000317840 ARFGAP3Q9NP61 516 aa12□□□□□ -0.49
COL3A1-202ENST00000317840 PUF60Q9UHX1 559 aaKnown RBP12□□□□□ -0.49
COL3A1-202ENST00000317840 GOLGA6L9A6NEM1 432 aa12□□□□□ -0.49
COL3A1-202ENST00000317840 RANBP6O60518 1105 aaKnown RBP12□□□□□ -0.49
COL3A1-202ENST00000317840 SPECC1LQ69YQ0 1117 aa12□□□□□ -0.49
COL3A1-202ENST00000317840 VSTM4Q8IW00 320 aa12□□□□□ -0.49
COL3A1-202ENST00000317840 ZBTB38Q8NAP3 1195 aaPredicted RBP12□□□□□ -0.49
COL3A1-202ENST00000317840 ANKRD20A12PQ8NF67 263 aa12□□□□□ -0.49
COL3A1-202ENST00000317840 STAMQ92783 540 aa12□□□□□ -0.49
COL3A1-202ENST00000317840 ZSWIM5Q9P217 1185 aa12□□□□□ -0.49
COL3A1-202ENST00000317840 MAP3K15Q6ZN16 1313 aa12□□□□□ -0.49
COL3A1-202ENST00000317840 TUBGCP6Q96RT7 1819 aa12□□□□□ -0.49
COL3A1-202ENST00000317840 KIF5CO60282 957 aa12□□□□□ -0.49
COL3A1-202ENST00000317840 PCCAP05165 728 aaPredicted RBP12□□□□□ -0.49
COL3A1-202ENST00000317840 UQCRFS1P1P0C7P4 283 aa12□□□□□ -0.49
COL3A1-202ENST00000317840 PPP2R3AQ06190 1150 aa12□□□□□ -0.49
COL3A1-202ENST00000317840 BRMS1Q9HCU9 246 aa12□□□□□ -0.49
COL3A1-202ENST00000317840 PDE8AO60658 829 aa11.99□□□□□ -0.49
COL3A1-202ENST00000317840 RILPL1Q5EBL4 403 aa11.99□□□□□ -0.49
COL3A1-202ENST00000317840 METTL16Q86W50 562 aaKnown RBP11.99□□□□□ -0.49
COL3A1-202ENST00000317840 ANKRD18AQ8IVF6 992 aa11.99□□□□□ -0.49
COL3A1-202ENST00000317840 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.99□□□□□ -0.49
COL3A1-202ENST00000317840 KRT23Q9C075 422 aa11.99□□□□□ -0.49
COL3A1-202ENST00000317840 CAVIN4Q5BKX8 364 aa11.99□□□□□ -0.49
COL3A1-202ENST00000317840 NLRP10Q86W26 655 aa11.99□□□□□ -0.49
COL3A1-202ENST00000317840 IFNL3Q8IZI9 196 aa11.99□□□□□ -0.49
COL3A1-202ENST00000317840 SMARCC1Q92922 1105 aaPredicted RBP11.99□□□□□ -0.49
COL3A1-202ENST00000317840 NEDD4P46934 1319 aa11.99□□□□□ -0.49
COL3A1-202ENST00000317840 CCDC175P0C221 793 aa11.99□□□□□ -0.49
COL3A1-202ENST00000317840 PNMA6AP0CW24 399 aaPredicted RBP11.99□□□□□ -0.49
COL3A1-202ENST00000317840 MCM6Q14566 821 aa11.99□□□□□ -0.49
COL3A1-202ENST00000317840 CNNM2Q9H8M5 875 aa11.99□□□□□ -0.49
COL3A1-202ENST00000317840 SAMSN1Q9NSI8 373 aaKnown RBP11.99□□□□□ -0.49
COL3A1-202ENST00000317840 PRKAB2O43741 272 aa11.98□□□□□ -0.49
COL3A1-202ENST00000317840 SAMD1Q6SPF0 538 aaPredicted RBP11.98□□□□□ -0.49
COL3A1-202ENST00000317840 MLKLQ8NB16 471 aa11.98□□□□□ -0.49
COL3A1-202ENST00000317840 CDC5LQ99459 802 aaKnown RBP11.98□□□□□ -0.49
COL3A1-202ENST00000317840 RTCBQ9Y3I0 505 aaKnown RBP11.98□□□□□ -0.49
COL3A1-202ENST00000317840 TRIM75PA6NK02 468 aa11.98□□□□□ -0.49
COL3A1-202ENST00000317840 PDE8BO95263 885 aa11.98□□□□□ -0.49
COL3A1-202ENST00000317840 SLFN14P0C7P3 912 aa11.98□□□□□ -0.49
COL3A1-202ENST00000317840 CTSWP56202 376 aa11.98□□□□□ -0.49
COL3A1-202ENST00000317840 TSR1Q2NL82 804 aaKnown RBP11.98□□□□□ -0.49
COL3A1-202ENST00000317840 RESP18Q5W5W9 173 aa11.98□□□□□ -0.49
COL3A1-202ENST00000317840 NLRP3Q96P20 1036 aa11.98□□□□□ -0.49
COL3A1-202ENST00000317840 TFCP2L1Q9NZI6 479 aa11.98□□□□□ -0.49
COL3A1-202ENST00000317840 PPP1R1BQ9UD71 204 aaPredicted RBP11.98□□□□□ -0.49
COL3A1-202ENST00000317840 UBE3CQ15386 1083 aa11.98□□□□□ -0.49
COL3A1-202ENST00000317840 AKNAD1Q5T1N1 836 aa11.98□□□□□ -0.49
COL3A1-202ENST00000317840 IGSF22Q8N9C0 903 aa11.98□□□□□ -0.49
COL3A1-202ENST00000317840 CALCOCO1Q9P1Z2 691 aa11.98□□□□□ -0.49
COL3A1-202ENST00000317840 SRP68Q9UHB9 627 aaKnown RBP11.98□□□□□ -0.49
COL3A1-202ENST00000317840 MAN1B1Q9UKM7 699 aa11.98□□□□□ -0.49
COL3A1-202ENST00000317840 PCDHB6Q9Y5E3 794 aa11.98□□□□□ -0.49
COL3A1-202ENST00000317840 UBN2Q6ZU65 1347 aa11.97□□□□□ -0.49
COL3A1-202ENST00000317840 COBLO75128 1261 aa11.97□□□□□ -0.49
COL3A1-202ENST00000317840 GUCY1A2P33402 732 aa11.97□□□□□ -0.49
COL3A1-202ENST00000317840 CCT6AP40227 531 aaKnown RBP11.97□□□□□ -0.49
COL3A1-202ENST00000317840 PDE4BQ07343 736 aa11.97□□□□□ -0.49
COL3A1-202ENST00000317840 KANK3Q6NY19 840 aa11.97□□□□□ -0.49
COL3A1-202ENST00000317840 SPATA5Q8NB90 893 aa11.97□□□□□ -0.49
COL3A1-202ENST00000317840 TTLL11Q8NHH1 800 aa11.97□□□□□ -0.49
COL3A1-202ENST00000317840 L2HGDHQ9H9P8 463 aa11.97□□□□□ -0.49
COL3A1-202ENST00000317840 FBXO3Q9UK99 471 aa11.97□□□□□ -0.49
COL3A1-202ENST00000317840 RGPD2P0DJD1 1756 aa11.97□□□□□ -0.49
COL3A1-202ENST00000317840 MED1Q15648 1581 aaPredicted RBP11.97□□□□□ -0.49
COL3A1-202ENST00000317840 PHLPP2Q6ZVD8 1323 aa11.97□□□□□ -0.49
COL3A1-202ENST00000317840 EFCAB8A8MWE9 144 aa11.97□□□□□ -0.49
COL3A1-202ENST00000317840 PATL2C9JE40 543 aaKnown RBP11.97□□□□□ -0.49
COL3A1-202ENST00000317840 AKR1B15C9JRZ8 316 aaPredicted RBP11.97□□□□□ -0.49
COL3A1-202ENST00000317840 N4BP3O15049 544 aa11.97□□□□□ -0.49
COL3A1-202ENST00000317840 PRDM1O75626 825 aa11.97□□□□□ -0.49
COL3A1-202ENST00000317840 CYP7A1P22680 504 aa11.97□□□□□ -0.49
COL3A1-202ENST00000317840 GRIN1Q05586 938 aa11.97□□□□□ -0.49
COL3A1-202ENST00000317840 SUSD4Q5VX71 490 aa11.97□□□□□ -0.49
COL3A1-202ENST00000317840 ISCA1Q9BUE6 129 aa11.97□□□□□ -0.49
COL3A1-202ENST00000317840 RNF41Q9H4P4 317 aaPredicted RBP11.97□□□□□ -0.49
COL3A1-202ENST00000317840 RNF216Q9NWF9 866 aaPredicted RBP11.97□□□□□ -0.49
COL3A1-202ENST00000317840 VPS54Q9P1Q0 977 aa11.97□□□□□ -0.49
COL3A1-202ENST00000317840 TUBE1Q9UJT0 475 aa11.97□□□□□ -0.49
COL3A1-202ENST00000317840 BCAMP50895 628 aa11.97□□□□□ -0.49
COL3A1-202ENST00000317840 PUM3Q15397 648 aaKnown RBP11.97□□□□□ -0.49
COL3A1-202ENST00000317840 ZNF569Q5MCW4 686 aa11.97□□□□□ -0.49
COL3A1-202ENST00000317840 TOGARAM2Q6ZUX3 1019 aa11.97□□□□□ -0.49
COL3A1-202ENST00000317840 SMYD4Q8IYR2 804 aaPredicted RBP11.97□□□□□ -0.49
COL3A1-202ENST00000317840 WDR24Q96S15 920 aa11.97□□□□□ -0.49
COL3A1-202ENST00000317840 NUP88Q99567 741 aaPredicted RBP11.97□□□□□ -0.49
COL3A1-202ENST00000317840 C6orf229H3BNL8 230 aa11.96□□□□□ -0.49
COL3A1-202ENST00000317840 DEXIO95424 95 aa11.96□□□□□ -0.49
COL3A1-202ENST00000317840 PRR29P0C7W0 189 aa11.96□□□□□ -0.49
COL3A1-202ENST00000317840 CASP1P29466 404 aa11.96□□□□□ -0.49
COL3A1-202ENST00000317840 JAKMIP3Q5VZ66 844 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms