RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 ALDH1B1P30837 517 aa7.55□□□□□ -1.2
ZNF540-201ENST00000316433 TUBB4BP68371 445 aa7.55□□□□□ -1.2
ZNF540-201ENST00000316433 BEND6Q5SZJ8 279 aaPredicted RBP7.55□□□□□ -1.2
ZNF540-201ENST00000316433 UNC5CLQ8IV45 518 aa7.55□□□□□ -1.2
ZNF540-201ENST00000316433 THEMISQ8N1K5 641 aaPredicted RBP7.55□□□□□ -1.2
ZNF540-201ENST00000316433 CCDC102AQ96A19 550 aa7.55□□□□□ -1.2
ZNF540-201ENST00000316433 KLC4Q9NSK0 619 aa7.55□□□□□ -1.2
ZNF540-201ENST00000316433 PARP3Q9Y6F1 533 aa7.55□□□□□ -1.2
ZNF540-201ENST00000316433 KDM6AO15550 1401 aaPredicted RBP7.55□□□□□ -1.2
ZNF540-201ENST00000316433 NT5C2P49902 561 aa7.54□□□□□ -1.2
ZNF540-201ENST00000316433 ZNF165P49910 485 aa7.54□□□□□ -1.2
ZNF540-201ENST00000316433 RCAN1P53805 252 aa7.54□□□□□ -1.2
ZNF540-201ENST00000316433 ACTN3Q08043 901 aaPredicted RBP7.54□□□□□ -1.2
ZNF540-201ENST00000316433 USP4Q13107 963 aa7.54□□□□□ -1.2
ZNF540-201ENST00000316433 MYBPC2Q14324 1141 aa7.54□□□□□ -1.2
ZNF540-201ENST00000316433 IQCB1Q15051 598 aa7.54□□□□□ -1.2
ZNF540-201ENST00000316433 TRIM42Q8IWZ5 723 aa7.54□□□□□ -1.2
ZNF540-201ENST00000316433 YIPF2Q9BWQ6 316 aa7.54□□□□□ -1.2
ZNF540-201ENST00000316433 ANO2Q9NQ90 1003 aa7.54□□□□□ -1.2
ZNF540-201ENST00000316433 DDX21Q9NR30 783 aaKnown RBP eCLIP7.54□□□□□ -1.2
ZNF540-201ENST00000316433 HELLSQ9NRZ9 838 aa7.54□□□□□ -1.2
ZNF540-201ENST00000316433 MYO5AQ9Y4I1 1855 aaKnown RBP7.54□□□□□ -1.2
ZNF540-201ENST00000316433 USP16Q9Y5T5 823 aa7.54□□□□□ -1.2
ZNF540-201ENST00000316433 WDR17Q8IZU2 1322 aa7.54□□□□□ -1.2
ZNF540-201ENST00000316433 XIRP1Q702N8 1843 aaKnown RBP7.54□□□□□ -1.2
ZNF540-201ENST00000316433 SLC27A2O14975 620 aa7.54□□□□□ -1.2
ZNF540-201ENST00000316433 PHACTR2O75167 634 aa7.54□□□□□ -1.2
ZNF540-201ENST00000316433 CIAO1O76071 339 aa7.54□□□□□ -1.2
ZNF540-201ENST00000316433 ZKSCAN1P17029 563 aaPredicted RBP7.54□□□□□ -1.2
ZNF540-201ENST00000316433 GBP2P32456 591 aaPredicted RBP7.54□□□□□ -1.2
ZNF540-201ENST00000316433 TXLNAP40222 546 aa7.54□□□□□ -1.2
ZNF540-201ENST00000316433 THEMIS2Q5TEJ8 643 aa7.54□□□□□ -1.2
ZNF540-201ENST00000316433 CREB3L3Q68CJ9 461 aa7.54□□□□□ -1.2
ZNF540-201ENST00000316433 CEP57Q86XR8 500 aa7.54□□□□□ -1.2
ZNF540-201ENST00000316433 GOLGA1Q92805 767 aa7.54□□□□□ -1.2
ZNF540-201ENST00000316433 TSGA10Q9BZW7 698 aa7.54□□□□□ -1.2
ZNF540-201ENST00000316433 IL25Q9H293 177 aa7.54□□□□□ -1.2
ZNF540-201ENST00000316433 ROBO1Q9Y6N7 1651 aa7.54□□□□□ -1.2
ZNF540-201ENST00000316433 DUOX1Q9NRD9 1551 aa7.54□□□□□ -1.2
ZNF540-201ENST00000316433 AHCYL1O43865 530 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 MYL1P05976 194 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 ADD1P35611 737 aaKnown RBP7.53□□□□□ -1.2
ZNF540-201ENST00000316433 PDE6BP35913 854 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 RFX5P48382 616 aaPredicted RBP7.53□□□□□ -1.2
ZNF540-201ENST00000316433 PPP2R3AQ06190 1150 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 DCTN1Q14203 1278 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 TTLL7Q6ZT98 887 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 RASEFQ8IZ41 740 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 CLASRPQ8N2M8 674 aaKnown RBP7.53□□□□□ -1.2
ZNF540-201ENST00000316433 ENGASEQ8NFI3 743 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 ZNF274Q96GC6 653 aaPredicted RBP7.53□□□□□ -1.2
ZNF540-201ENST00000316433 IQCGQ9H095 443 aaKnown RBP7.53□□□□□ -1.2
ZNF540-201ENST00000316433 TMEM165Q9HC07 324 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 SUN2Q9UH99 717 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 CFAP45Q9UL16 551 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 NUB1Q9Y5A7 615 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 GOLGA6L19H0YKK7 550 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 SHOX2O60902 331 aaPredicted RBP7.53□□□□□ -1.2
ZNF540-201ENST00000316433 FAM69CQ0P6D2 419 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 TOB2Q14106 344 aaPredicted RBP7.53□□□□□ -1.2
ZNF540-201ENST00000316433 CAMK4Q16566 473 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 DZIP3Q86Y13 1208 aaKnown RBP7.53□□□□□ -1.2
ZNF540-201ENST00000316433 MFN1Q8IWA4 741 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 ATL2Q8NHH9 583 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 BICD1Q96G01 975 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 RGL1Q9NZL6 768 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.53□□□□□ -1.2
ZNF540-201ENST00000316433 MRFAP1Q9Y605 127 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 LAMB1P07942 1786 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 IKBKBO14920 756 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 ERLIN1O75477 346 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 FESP07332 822 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 GJB2P29033 226 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 USP5P45974 858 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 CASP7P55210 303 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 EXOSC10Q01780 885 aaKnown RBP7.53□□□□□ -1.2
ZNF540-201ENST00000316433 CKAP2LQ8IYA6 745 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 FAM81AQ8TBF8 368 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 NUP133Q8WUM0 1156 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 RSRC1Q96IZ7 334 aaKnown RBP7.53□□□□□ -1.2
ZNF540-201ENST00000316433 LARP6Q9BRS8 491 aaKnown RBP7.53□□□□□ -1.2
ZNF540-201ENST00000316433 TSPYL2Q9H2G4 693 aaPredicted RBP7.53□□□□□ -1.2
ZNF540-201ENST00000316433 TNMDQ9H2S6 317 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 RTEL1Q9NZ71 1219 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 L1RE1Q9UN81 338 aa7.53□□□□□ -1.2
ZNF540-201ENST00000316433 SHTN1A0MZ66 631 aa7.52□□□□□ -1.21
ZNF540-201ENST00000316433 SPDYE3A6NKU9 549 aa7.52□□□□□ -1.21
ZNF540-201ENST00000316433 RNMTO43148 476 aaKnown RBP7.52□□□□□ -1.21
ZNF540-201ENST00000316433 KIAA0754O94854 1291 aa7.52□□□□□ -1.21
ZNF540-201ENST00000316433 DDX58O95786 925 aaKnown RBP7.52□□□□□ -1.21
ZNF540-201ENST00000316433 SMTNP53814 917 aa7.52□□□□□ -1.21
ZNF540-201ENST00000316433 SAFB2Q14151 953 aaKnown RBP eCLIP7.52□□□□□ -1.21
ZNF540-201ENST00000316433 PDIA6Q15084 440 aa7.52□□□□□ -1.21
ZNF540-201ENST00000316433 DBN1Q16643 649 aa7.52□□□□□ -1.21
ZNF540-201ENST00000316433 CCDC181Q5TID7 509 aa7.52□□□□□ -1.21
ZNF540-201ENST00000316433 CWF19L1Q69YN2 538 aaKnown RBP7.52□□□□□ -1.21
ZNF540-201ENST00000316433 CAPRIN2Q6IMN6 1127 aaKnown RBP7.52□□□□□ -1.21
ZNF540-201ENST00000316433 TRIM65Q6PJ69 517 aa7.52□□□□□ -1.21
ZNF540-201ENST00000316433 NOL8Q76FK4 1167 aaKnown RBP7.52□□□□□ -1.21
ZNF540-201ENST00000316433 ARHGEF25Q86VW2 580 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms