RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 AP1S2P56377 157 aa8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 TRIM32Q13049 653 aa8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 DMC1Q14565 340 aa8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 HHATQ5VTY9 493 aa8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 VPS8Q8N3P4 1428 aa8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 PPWD1Q96BP3 646 aaKnown RBP8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 TRAIPQ9BWF2 469 aa8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 TTC12Q9H892 705 aaPredicted RBP8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 RBM27Q9P2N5 1060 aaKnown RBP8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 COG6Q9Y2V7 657 aa8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 PRG3Q9Y2Y8 225 aaPredicted RBP8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 DCAF8L1A6NGE4 600 aa8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 CCDC85CA6NKD9 419 aa8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 GOLGA8TH3BQL2 631 aa8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 FLOT1O75955 427 aa8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 BFSP1Q12934 665 aa8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 SNCBQ16143 134 aa8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 CARD10Q9BWT7 1032 aa8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 ATP6V0A4Q9HBG4 840 aa8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 DMAP1Q9NPF5 467 aaPredicted RBP8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 MAD1L1Q9Y6D9 718 aa8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 MTUS2Q5JR59 1369 aa8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 WASHC2AQ641Q2 1341 aa8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 WDR47O94967 919 aa8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 CLTAP09496 248 aa8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 TNFAIP2Q03169 654 aa8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 SNRNP27Q8WVK2 155 aaKnown RBP8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 FGD4Q96M96 766 aa8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 SUCLA2Q9P2R7 463 aaPredicted RBP8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 WARS2Q9UGM6 360 aaKnown RBP8.46□□□□□ -1.06
LIMCH1-201ENST00000313860 BIRC5O15392 142 aa8.45□□□□□ -1.06
LIMCH1-201ENST00000313860 TRIM16O95361 564 aa8.45□□□□□ -1.06
LIMCH1-201ENST00000313860 KRT85P78386 507 aa8.45□□□□□ -1.06
LIMCH1-201ENST00000313860 MAP3K11Q16584 847 aa8.45□□□□□ -1.06
LIMCH1-201ENST00000313860 NARS2Q96I59 477 aaKnown RBP8.45□□□□□ -1.06
LIMCH1-201ENST00000313860 RIOK1Q9BRS2 568 aaKnown RBP8.45□□□□□ -1.06
LIMCH1-201ENST00000313860 FAM95CA0A1B0GW59 222 aa8.45□□□□□ -1.06
LIMCH1-201ENST00000313860 U2AF2P26368 475 aaKnown RBP eCLIP8.45□□□□□ -1.06
LIMCH1-201ENST00000313860 TMOD1P28289 359 aa8.45□□□□□ -1.06
LIMCH1-201ENST00000313860 CCDC186Q7Z3E2 898 aa8.45□□□□□ -1.06
LIMCH1-201ENST00000313860 CROCCP2Q86T23 111 aa8.45□□□□□ -1.06
LIMCH1-201ENST00000313860 NRBF2Q96F24 287 aa8.45□□□□□ -1.06
LIMCH1-201ENST00000313860 CABS1Q96KC9 395 aa8.45□□□□□ -1.06
LIMCH1-201ENST00000313860 SIKE1Q9BRV8 207 aa8.45□□□□□ -1.06
LIMCH1-201ENST00000313860 AXIN2Q9Y2T1 843 aa8.45□□□□□ -1.06
LIMCH1-201ENST00000313860 GOLGA3Q08378 1498 aa8.45□□□□□ -1.06
LIMCH1-201ENST00000313860 ANGPT2O15123 496 aa8.45□□□□□ -1.06
LIMCH1-201ENST00000313860 ASAP2O43150 1006 aa8.45□□□□□ -1.06
LIMCH1-201ENST00000313860 TSTA3Q13630 321 aaPredicted RBP8.45□□□□□ -1.06
LIMCH1-201ENST00000313860 DCAF11Q8TEB1 546 aa8.45□□□□□ -1.06
LIMCH1-201ENST00000313860 ZNF830Q96NB3 372 aaPredicted RBP8.45□□□□□ -1.06
LIMCH1-201ENST00000313860 CLEC4MQ9H2X3 399 aaPredicted RBP8.45□□□□□ -1.06
LIMCH1-201ENST00000313860 USP25Q9UHP3 1055 aa8.45□□□□□ -1.06
LIMCH1-201ENST00000313860 TRPC6Q9Y210 931 aa8.45□□□□□ -1.06
LIMCH1-201ENST00000313860 TRIM71Q2Q1W2 868 aaKnown RBP8.45□□□□□ -1.06
LIMCH1-201ENST00000313860 ZNF280BQ86YH2 543 aa8.45□□□□□ -1.06
LIMCH1-201ENST00000313860 B4GALNT2Q8NHY0 566 aa8.45□□□□□ -1.06
LIMCH1-201ENST00000313860 CALR3Q96L12 384 aaKnown RBP8.45□□□□□ -1.06
LIMCH1-201ENST00000313860 RAD54L2Q9Y4B4 1467 aa8.45□□□□□ -1.06
LIMCH1-201ENST00000313860 EIF4E1BA6NMX2 242 aaKnown RBP8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 AP2B1P63010 937 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 IFI16Q16666 785 aaKnown RBP8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 CWC27Q6UX04 472 aaKnown RBP8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 TRIM59Q8IWR1 403 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 DENND6BQ8NEG7 585 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 CYTH2Q99418 400 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 OLA1Q9NTK5 396 aaKnown RBP8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 NACADO15069 1562 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 EFCAB14O75071 495 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 MCF2P10911 925 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 PTGS1P23219 599 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 MMEL1Q495T6 779 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 ANKRD20A3Q5VUR7 823 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 POTEEQ6S8J3 1075 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 TUBGCP3Q96CW5 907 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 CLIP1P30622 1438 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 A0A0B4J269 797 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 TUBB3Q13509 450 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 RUNDC1Q96C34 613 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 TRIM11Q96F44 468 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 EFHD1Q9BUP0 239 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 TUBB1Q9H4B7 451 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 WBP11Q9Y2W2 641 aaKnown RBP8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 NOC2LQ9Y3T9 749 aaKnown RBP8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 ROCK1Q13464 1354 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 EFR3AQ14156 821 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 FAM133BQ5BKY9 247 aaKnown RBP8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 KSR2Q6VAB6 950 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 RASSF5Q8WWW0 418 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 RPS6KC1Q96S38 1066 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 CARD9Q9H257 536 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 DNAI1Q9UI46 699 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 SMARCA1P28370 1054 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 PLS1Q14651 629 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 E2F4Q16254 413 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 HYOU1Q9Y4L1 999 aa8.44□□□□□ -1.06
LIMCH1-201ENST00000313860 SPDYE2BA6NHP3 402 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 SPDYE6P0CI01 402 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 PDCP20941 246 aa8.43□□□□□ -1.06
LIMCH1-201ENST00000313860 LIG3P49916 1009 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms