RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 PPP2R5AQ15172 486 aa5.84□□□□□ -1.47
SCN1A-201ENST00000303395 TERF2Q15554 542 aa5.84□□□□□ -1.47
SCN1A-201ENST00000303395 RUFY3Q7L099 469 aa5.84□□□□□ -1.47
SCN1A-201ENST00000303395 RIC3Q7Z5B4 369 aa5.84□□□□□ -1.47
SCN1A-201ENST00000303395 SMARCC2Q8TAQ2 1214 aa5.84□□□□□ -1.47
SCN1A-201ENST00000303395 GIMAP4Q9NUV9 329 aa5.84□□□□□ -1.47
SCN1A-201ENST00000303395 TPCN1Q9ULQ1 816 aa5.84□□□□□ -1.47
SCN1A-201ENST00000303395 SBDSQ9Y3A5 250 aaKnown RBP eCLIP5.84□□□□□ -1.47
SCN1A-201ENST00000303395 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.84□□□□□ -1.47
SCN1A-201ENST00000303395 PRIM1P49642 420 aaKnown RBP5.84□□□□□ -1.47
SCN1A-201ENST00000303395 TMC6Q7Z403 805 aa5.84□□□□□ -1.47
SCN1A-201ENST00000303395 PLEKHM2Q8IWE5 1019 aa5.84□□□□□ -1.47
SCN1A-201ENST00000303395 CCT6BQ92526 530 aa5.84□□□□□ -1.47
SCN1A-201ENST00000303395 RABEP2Q9H5N1 569 aa5.84□□□□□ -1.47
SCN1A-201ENST00000303395 NKIRAS1Q9NYS0 192 aa5.84□□□□□ -1.47
SCN1A-201ENST00000303395 A0A1W2PRG0 241 aa5.84□□□□□ -1.47
SCN1A-201ENST00000303395 CDC37Q16543 378 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-201ENST00000303395 GSDMAQ96QA5 445 aa5.84□□□□□ -1.47
SCN1A-201ENST00000303395 CDC5LQ99459 802 aaKnown RBP5.84□□□□□ -1.47
SCN1A-201ENST00000303395 SEC63Q9UGP8 760 aaKnown RBP5.84□□□□□ -1.47
SCN1A-201ENST00000303395 SMAPO00193 183 aa5.84□□□□□ -1.47
SCN1A-201ENST00000303395 EIF2S1P05198 315 aaKnown RBP5.84□□□□□ -1.47
SCN1A-201ENST00000303395 PLCG2P16885 1265 aa5.84□□□□□ -1.47
SCN1A-201ENST00000303395 SSRP1Q08945 709 aaKnown RBP5.84□□□□□ -1.47
SCN1A-201ENST00000303395 LGSNQ5TDP6 509 aa5.84□□□□□ -1.47
SCN1A-201ENST00000303395 USP48Q86UV5 1035 aa5.84□□□□□ -1.47
SCN1A-201ENST00000303395 ZSCAN29Q8IWY8 852 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-201ENST00000303395 CCDC68Q9H2F9 335 aa5.84□□□□□ -1.47
SCN1A-201ENST00000303395 SYNCQ9H7C4 482 aa5.84□□□□□ -1.47
SCN1A-201ENST00000303395 WWC3Q9ULE0 1092 aa5.84□□□□□ -1.47
SCN1A-201ENST00000303395 NDUFAB1O14561 156 aa5.84□□□□□ -1.48
SCN1A-201ENST00000303395 SSBP05455 408 aaKnown RBP eCLIP5.84□□□□□ -1.48
SCN1A-201ENST00000303395 ATP5BP06576 529 aaKnown RBP5.84□□□□□ -1.48
SCN1A-201ENST00000303395 CEP85LQ5SZL2 805 aa5.84□□□□□ -1.48
SCN1A-201ENST00000303395 POP5Q969H6 163 aaKnown RBP5.84□□□□□ -1.48
SCN1A-201ENST00000303395 IWS1Q96ST2 819 aa5.84□□□□□ -1.48
SCN1A-201ENST00000303395 RNF17Q9BXT8 1623 aaKnown RBP5.84□□□□□ -1.48
SCN1A-201ENST00000303395 TRIM75PA6NK02 468 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 SDSP20132 328 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 NLRP12P59046 1061 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 GSTO1P78417 241 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 ANO6Q4KMQ2 910 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 SYCP2LQ5T4T6 812 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 CATIPQ7Z7H3 387 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 C16orf71Q8IYS4 520 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-201ENST00000303395 ATP2A3Q93084 1043 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 CCDC42Q96M95 316 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 CCDC188H7C350 402 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 AKR1B10O60218 316 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 AACSQ86V21 672 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 IL17RAQ96F46 866 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 FAM210AQ96ND0 272 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 TYW1Q9NV66 732 aaKnown RBP5.83□□□□□ -1.48
SCN1A-201ENST00000303395 CDC23Q9UJX2 597 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 OVOS2A0A0G2JMS6 1433 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 CRCPO75575 148 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 GFPT2O94808 682 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 MORC4Q8TE76 937 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 TBC1D5Q92609 795 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 NEUROD6Q96NK8 337 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 NOX5Q96PH1 765 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 MLH3Q9UHC1 1453 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 ZC3H13Q5T200 1668 aaKnown RBP5.83□□□□□ -1.48
SCN1A-201ENST00000303395 RNF8O76064 485 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 CHMLP26374 656 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 GNA11P29992 359 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 KMT5BQ4FZB7 885 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 MCMDC2Q4G0Z9 681 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 AFAP1L2Q8N4X5 818 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 RNF10Q8N5U6 811 aaKnown RBP5.83□□□□□ -1.48
SCN1A-201ENST00000303395 RHPN1Q8TCX5 695 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 ATRIPQ8WXE1 791 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 CUL5Q93034 780 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 NBPF3Q9H094 633 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 N4BP3O15049 544 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 CMA1P23946 247 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 GRAMD1AQ96CP6 724 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 SIL1Q9H173 461 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 ZC4H2Q9NQZ6 224 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 ATG3Q9NT62 314 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 DISP1Q96F81 1524 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 LRRC7Q96NW7 1537 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 CHMP2AO43633 222 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 N4BP1O75113 896 aaKnown RBP5.83□□□□□ -1.48
SCN1A-201ENST00000303395 RNF40O75150 1001 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 TATP17735 454 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-201ENST00000303395 DACT3Q96B18 629 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-201ENST00000303395 TXLNGQ9NUQ3 528 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 ABCB11O95342 1321 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 RFC1P35251 1148 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-201ENST00000303395 CNNM4Q6P4Q7 775 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 CWC27Q6UX04 472 aaKnown RBP5.83□□□□□ -1.48
SCN1A-201ENST00000303395 CCDC144CPQ8IYA2 1237 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 GRK7Q8WTQ7 553 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 STMN2Q93045 179 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 OLFM3Q96PB7 478 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 BCL2L12Q9HB09 334 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 MRPL40Q9NQ50 206 aaKnown RBP5.83□□□□□ -1.48
SCN1A-201ENST00000303395 TXNDC16Q9P2K2 825 aa5.83□□□□□ -1.48
SCN1A-201ENST00000303395 VIRMAQ69YN4 1812 aaKnown RBP5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms