RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 MICAL1Q8TDZ2 1067 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 VCX3BQ9H321 246 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 KCNF1Q9H3M0 494 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 CTAGE9A4FU28 777 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 PI4KAP2A4QPH2 592 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 PPFIA4O75335 1185 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 TADA3O75528 432 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 PCP11498 1178 aaKnown RBP7.19□□□□□ -1.26
VPS35-201ENST00000299138 ANO1Q5XXA6 986 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 SRGAP1Q7Z6B7 1085 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 CACNA2D3Q8IZS8 1091 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 PI4KAP1Q8N8J0 262 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 EYA1Q99502 592 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP7.19□□□□□ -1.26
VPS35-201ENST00000299138 TEX13AQ9BXU3 409 aaPredicted RBP7.19□□□□□ -1.26
VPS35-201ENST00000299138 TAOK3Q9H2K8 898 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 PALLDQ8WX93 1383 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 F6X3S4 739 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 PHACTR2O75167 634 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 CIAO1O76071 339 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 MAP7Q14244 749 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 ELF2Q15723 593 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 ARHGEF25Q86VW2 580 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 FNBP4Q8N3X1 1017 aaPredicted RBP7.19□□□□□ -1.26
VPS35-201ENST00000299138 NUP58Q9BVL2 599 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 CEP126Q9P2H0 1117 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 TARSL2A2RTX5 802 aaKnown RBP7.18□□□□□ -1.26
VPS35-201ENST00000299138 PDE6BP35913 854 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 MAGEA9P43362 315 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 PSMD6Q15008 389 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 FBXO38Q6PIJ6 1188 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 LRRC27Q9C0I9 530 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 NSFL1CQ9UNZ2 370 aaKnown RBP7.18□□□□□ -1.26
VPS35-201ENST00000299138 TSPOAP1O95153 1857 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 DIP2BQ9P265 1576 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 CEP170BQ9Y4F5 1589 aaPredicted RBP7.18□□□□□ -1.26
VPS35-201ENST00000299138 UQCRFS1P1P0C7P4 283 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 GNAT2P19087 354 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 ITIH3Q06033 890 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 KIF5AQ12840 1032 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 LRRC23Q53EV4 343 aaPredicted RBP7.18□□□□□ -1.26
VPS35-201ENST00000299138 CPLX4Q7Z7G2 160 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 FERMT2Q96AC1 680 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 TSNARE1Q96NA8 513 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 TSGA10Q9BZW7 698 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 FAM83GA6ND36 823 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 TULP2O00295 520 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 RNF113AO15541 343 aaKnown RBP7.18□□□□□ -1.26
VPS35-201ENST00000299138 CYLC1P35663 651 aaPredicted RBP7.18□□□□□ -1.26
VPS35-201ENST00000299138 CHMP4BP1P59074 171 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 CCZ1BP86790 482 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 CCZ1P86791 482 aaPredicted RBP7.18□□□□□ -1.26
VPS35-201ENST00000299138 PPP1R13BQ96KQ4 1090 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 TPCN1Q9ULQ1 816 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 CTNNA2P26232 953 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 RBBP5Q15291 538 aaKnown RBP7.18□□□□□ -1.26
VPS35-201ENST00000299138 SH2D4BQ5SQS7 431 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 CDC37L1Q7L3B6 337 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 ENGASEQ8NFI3 743 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 ANLNQ9NQW6 1124 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 PHF8Q9UPP1 1060 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 ADCY9O60503 1353 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 PPFIA2O75334 1257 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 CALM1P0DP23 149 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 CALM2P0DP24 149 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 CALM3P0DP25 149 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 GBP1P32455 592 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 PPP2R3AQ06190 1150 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 LINC00301Q8NCQ3 95 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 ZNF830Q96NB3 372 aaPredicted RBP7.18□□□□□ -1.26
VPS35-201ENST00000299138 GBP5Q96PP8 586 aa7.18□□□□□ -1.26
VPS35-201ENST00000299138 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.18□□□□□ -1.26
VPS35-201ENST00000299138 BTBD11A6QL63 1104 aa7.17□□□□□ -1.26
VPS35-201ENST00000299138 KMT5BQ4FZB7 885 aa7.17□□□□□ -1.26
VPS35-201ENST00000299138 RAPGEF4Q8WZA2 1011 aa7.17□□□□□ -1.26
VPS35-201ENST00000299138 SEC62Q99442 399 aaKnown RBP7.17□□□□□ -1.26
VPS35-201ENST00000299138 HAUS7Q99871 368 aa7.17□□□□□ -1.26
VPS35-201ENST00000299138 FAF1Q9UNN5 650 aaPredicted RBP7.17□□□□□ -1.26
VPS35-201ENST00000299138 AKR1B15C9JRZ8 316 aaPredicted RBP7.17□□□□□ -1.26
VPS35-201ENST00000299138 ZBTB22O15209 634 aa7.17□□□□□ -1.26
VPS35-201ENST00000299138 PRC1O43663 620 aa7.17□□□□□ -1.26
VPS35-201ENST00000299138 DRP2Q13474 957 aa7.17□□□□□ -1.26
VPS35-201ENST00000299138 CCDC63Q8NA47 563 aa7.17□□□□□ -1.26
VPS35-201ENST00000299138 GSDMAQ96QA5 445 aa7.17□□□□□ -1.26
VPS35-201ENST00000299138 VCXQ9H320 206 aa7.17□□□□□ -1.26
VPS35-201ENST00000299138 JADE2Q9NQC1 790 aa7.17□□□□□ -1.26
VPS35-201ENST00000299138 KRT86O43790 486 aa7.17□□□□□ -1.26
VPS35-201ENST00000299138 KIF1CO43896 1103 aaKnown RBP7.17□□□□□ -1.26
VPS35-201ENST00000299138 CLCN6P51797 869 aa7.17□□□□□ -1.26
VPS35-201ENST00000299138 TRIM68Q6AZZ1 485 aa7.17□□□□□ -1.26
VPS35-201ENST00000299138 SYT10Q6XYQ8 523 aa7.17□□□□□ -1.26
VPS35-201ENST00000299138 NSUN7Q8NE18 718 aaKnown RBP7.17□□□□□ -1.26
VPS35-201ENST00000299138 ZNF622Q969S3 477 aaKnown RBP eCLIP7.17□□□□□ -1.26
VPS35-201ENST00000299138 TRIM4Q9C037 500 aa7.17□□□□□ -1.26
VPS35-201ENST00000299138 KRT23Q9C075 422 aa7.17□□□□□ -1.26
VPS35-201ENST00000299138 FAM177BA6PVY3 158 aa7.17□□□□□ -1.26
VPS35-201ENST00000299138 USP5P45974 858 aa7.17□□□□□ -1.26
VPS35-201ENST00000299138 CC2D1AQ6P1N0 951 aaPredicted RBP7.17□□□□□ -1.26
VPS35-201ENST00000299138 CNNM3Q8NE01 707 aa7.17□□□□□ -1.26
VPS35-201ENST00000299138 USP6NLQ92738 828 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms