RNA–Protein interactions for RNA: ENST00000284771.6

PDLIM3-203, Transcript of PDZ and LIM domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM3, Length 1,672 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-203ENST00000284771 GABPAQ06546 454 aa25.9■■□□□ 1.74
PDLIM3-203ENST00000284771 PRAMEF18Q5VWM3 479 aa25.9■■□□□ 1.74
PDLIM3-203ENST00000284771 TTC6Q86TZ1 520 aa25.9■■□□□ 1.74
PDLIM3-203ENST00000284771 APOBEC3FQ8IUX4 373 aaKnown RBP25.9■■□□□ 1.74
PDLIM3-203ENST00000284771 ROBO3Q96MS0 1386 aa25.9■■□□□ 1.74
PDLIM3-203ENST00000284771 ZKSCAN1P17029 563 aaPredicted RBP25.9■■□□□ 1.74
PDLIM3-203ENST00000284771 TNNI2P48788 182 aa25.9■■□□□ 1.74
PDLIM3-203ENST00000284771 SLC44A5Q8NCS7 719 aa25.9■■□□□ 1.74
PDLIM3-203ENST00000284771 CSRNP1Q96S65 589 aa25.9■■□□□ 1.74
PDLIM3-203ENST00000284771 FGRP09769 529 aa25.89■■□□□ 1.73
PDLIM3-203ENST00000284771 ANAPC15P60006 121 aa25.89■■□□□ 1.73
PDLIM3-203ENST00000284771 AKNAD1Q5T1N1 836 aa25.89■■□□□ 1.73
PDLIM3-203ENST00000284771 DCPSQ96C86 337 aaKnown RBP25.89■■□□□ 1.73
PDLIM3-203ENST00000284771 DNAJC18Q9H819 358 aa25.89■■□□□ 1.73
PDLIM3-203ENST00000284771 PI4KBQ9UBF8 816 aa25.89■■□□□ 1.73
PDLIM3-203ENST00000284771 AMOTL1Q8IY63 956 aa25.88■■□□□ 1.73
PDLIM3-203ENST00000284771 STAG1Q8WVM7 1258 aa25.88■■□□□ 1.73
PDLIM3-203ENST00000284771 NEDD4P46934 1319 aa25.88■■□□□ 1.73
PDLIM3-203ENST00000284771 PRDM1O75626 825 aa25.87■■□□□ 1.73
PDLIM3-203ENST00000284771 METTL16Q86W50 562 aaKnown RBP25.87■■□□□ 1.73
PDLIM3-203ENST00000284771 SERPINB13Q9UIV8 391 aa25.87■■□□□ 1.73
PDLIM3-203ENST00000284771 DDX52Q9Y2R4 599 aaKnown RBP eCLIP25.87■■□□□ 1.73
PDLIM3-203ENST00000284771 FAM196BA6NMK8 535 aa25.87■■□□□ 1.73
PDLIM3-203ENST00000284771 ADM5C9JUS6 153 aa25.87■■□□□ 1.73
PDLIM3-203ENST00000284771 HLA-DOAP06340 250 aa25.87■■□□□ 1.73
PDLIM3-203ENST00000284771 NBPF12Q5TAG4 269 aaPredicted RBP25.87■■□□□ 1.73
PDLIM3-203ENST00000284771 C16orf86Q6ZW13 317 aa25.87■■□□□ 1.73
PDLIM3-203ENST00000284771 EHD4Q9H223 541 aa25.87■■□□□ 1.73
PDLIM3-203ENST00000284771 CDK8P49336 464 aa25.86■■□□□ 1.73
PDLIM3-203ENST00000284771 MFSD6Q6ZSS7 791 aa25.86■■□□□ 1.73
PDLIM3-203ENST00000284771 KRT26Q7Z3Y9 468 aa25.86■■□□□ 1.73
PDLIM3-203ENST00000284771 CPA1P15085 419 aa25.85■■□□□ 1.73
PDLIM3-203ENST00000284771 FOXP4Q8IVH2 680 aaPredicted RBP25.85■■□□□ 1.73
PDLIM3-203ENST00000284771 CLEC11AQ9Y240 323 aa25.85■■□□□ 1.73
PDLIM3-203ENST00000284771 MAP1SQ66K74 1059 aaPredicted RBP25.84■■□□□ 1.73
PDLIM3-203ENST00000284771 MIGA2Q7L4E1 593 aa25.84■■□□□ 1.73
PDLIM3-203ENST00000284771 USP48Q86UV5 1035 aa25.84■■□□□ 1.73
PDLIM3-203ENST00000284771 SULF1Q8IWU6 871 aa25.84■■□□□ 1.73
PDLIM3-203ENST00000284771 JAKMIP1Q96N16 626 aaKnown RBP25.84■■□□□ 1.73
PDLIM3-203ENST00000284771 TSHZ2Q9NRE2 1034 aa25.84■■□□□ 1.73
PDLIM3-203ENST00000284771 SHMT1P34896 483 aa25.83■■□□□ 1.73
PDLIM3-203ENST00000284771 MAP3K10Q02779 954 aa25.83■■□□□ 1.73
PDLIM3-203ENST00000284771 NEK1Q96PY6 1258 aa25.83■■□□□ 1.73
PDLIM3-203ENST00000284771 GLIS2Q9BZE0 524 aaPredicted RBP25.83■■□□□ 1.73
PDLIM3-203ENST00000284771 B4E1Z4 1266 aa25.83■■□□□ 1.73
PDLIM3-203ENST00000284771 KRT32Q14532 448 aa25.83■■□□□ 1.73
PDLIM3-203ENST00000284771 UPF3BQ9BZI7 483 aaKnown RBP25.83■■□□□ 1.73
PDLIM3-203ENST00000284771 PPP2R3BQ9Y5P8 575 aa25.83■■□□□ 1.73
PDLIM3-203ENST00000284771 SLC3A2P08195 630 aaKnown RBP25.82■■□□□ 1.72
PDLIM3-203ENST00000284771 PDE4BQ07343 736 aa25.82■■□□□ 1.72
PDLIM3-203ENST00000284771 RNF41Q9H4P4 317 aaPredicted RBP25.82■■□□□ 1.72
PDLIM3-203ENST00000284771 GPBP1L1Q9HC44 474 aaPredicted RBP25.82■■□□□ 1.72
PDLIM3-203ENST00000284771 ZSWIM6Q9HCJ5 1215 aa25.82■■□□□ 1.72
PDLIM3-203ENST00000284771 ORC4O43929 436 aa25.81■■□□□ 1.72
PDLIM3-203ENST00000284771 CASTP20810 708 aaKnown RBP25.81■■□□□ 1.72
PDLIM3-203ENST00000284771 RASA1P20936 1047 aa25.81■■□□□ 1.72
PDLIM3-203ENST00000284771 RRP12Q5JTH9 1297 aaKnown RBP25.81■■□□□ 1.72
PDLIM3-203ENST00000284771 CDC37L1Q7L3B6 337 aa25.81■■□□□ 1.72
PDLIM3-203ENST00000284771 LDHDQ86WU2 507 aa25.81■■□□□ 1.72
PDLIM3-203ENST00000284771 MB21D2Q8IYB1 491 aaPredicted RBP25.81■■□□□ 1.72
PDLIM3-203ENST00000284771 CRACR2BQ8N4Y2 399 aaPredicted RBP25.81■■□□□ 1.72
PDLIM3-203ENST00000284771 NCOA7Q8NI08 942 aa25.81■■□□□ 1.72
PDLIM3-203ENST00000284771 TM6SF1Q9BZW5 370 aa25.81■■□□□ 1.72
PDLIM3-203ENST00000284771 TOMM22Q9NS69 142 aa25.81■■□□□ 1.72
PDLIM3-203ENST00000284771 ZSWIM5Q9P217 1185 aa25.81■■□□□ 1.72
PDLIM3-203ENST00000284771 SSC5DA1L4H1 1573 aa25.81■■□□□ 1.72
PDLIM3-203ENST00000284771 TBC1D12O60347 775 aa25.8■■□□□ 1.72
PDLIM3-203ENST00000284771 PCP11498 1178 aaKnown RBP25.8■■□□□ 1.72
PDLIM3-203ENST00000284771 RRP1BQ14684 758 aaKnown RBP25.8■■□□□ 1.72
PDLIM3-203ENST00000284771 TATDN1Q6P1N9 297 aa25.8■■□□□ 1.72
PDLIM3-203ENST00000284771 CYB5R4Q7L1T6 521 aa25.8■■□□□ 1.72
PDLIM3-203ENST00000284771 CHST3Q7LGC8 479 aa25.8■■□□□ 1.72
PDLIM3-203ENST00000284771 MKNK2Q9HBH9 465 aa25.8■■□□□ 1.72
PDLIM3-203ENST00000284771 HERC5Q9UII4 1024 aaKnown RBP25.8■■□□□ 1.72
PDLIM3-203ENST00000284771 FZD1Q9UP38 647 aa25.8■■□□□ 1.72
PDLIM3-203ENST00000284771 KDM4AO75164 1064 aa25.8■■□□□ 1.72
PDLIM3-203ENST00000284771 TCEANC2Q96MN5 208 aa25.8■■□□□ 1.72
PDLIM3-203ENST00000284771 XPO5Q9HAV4 1204 aaKnown RBP eCLIP25.8■■□□□ 1.72
PDLIM3-203ENST00000284771 SWAP70Q9UH65 585 aa25.8■■□□□ 1.72
PDLIM3-203ENST00000284771 ANTXR2P58335 489 aa25.79■■□□□ 1.72
PDLIM3-203ENST00000284771 FMR1Q06787 632 aaKnown RBP eCLIP25.79■■□□□ 1.72
PDLIM3-203ENST00000284771 FAM47AQ5JRC9 791 aa25.79■■□□□ 1.72
PDLIM3-203ENST00000284771 KRT23Q9C075 422 aa25.79■■□□□ 1.72
PDLIM3-203ENST00000284771 CNNM2Q9H8M5 875 aa25.79■■□□□ 1.72
PDLIM3-203ENST00000284771 KIF3CO14782 793 aa25.78■■□□□ 1.72
PDLIM3-203ENST00000284771 PSMA5P28066 241 aa25.78■■□□□ 1.72
PDLIM3-203ENST00000284771 EXOSC10Q01780 885 aaKnown RBP25.78■■□□□ 1.72
PDLIM3-203ENST00000284771 TRDNQ13061 729 aa25.78■■□□□ 1.72
PDLIM3-203ENST00000284771 SHROOM1Q2M3G4 852 aaPredicted RBP25.78■■□□□ 1.72
PDLIM3-203ENST00000284771 RUFY3Q7L099 469 aa25.78■■□□□ 1.72
PDLIM3-203ENST00000284771 MYH8P13535 1937 aa25.78■■□□□ 1.72
PDLIM3-203ENST00000284771 RANBP6O60518 1105 aaKnown RBP25.77■■□□□ 1.72
PDLIM3-203ENST00000284771 BLOC1S2Q6QNY1 142 aa25.77■■□□□ 1.72
PDLIM3-203ENST00000284771 RALYLQ86SE5 291 aaKnown RBP25.77■■□□□ 1.72
PDLIM3-203ENST00000284771 PHF20L1A8MW92 1017 aa25.77■■□□□ 1.72
PDLIM3-203ENST00000284771 TRAF5O00463 557 aa25.77■■□□□ 1.72
PDLIM3-203ENST00000284771 JAG1P78504 1218 aa25.77■■□□□ 1.72
PDLIM3-203ENST00000284771 DHX32Q7L7V1 743 aaKnown RBP25.77■■□□□ 1.72
PDLIM3-203ENST00000284771 ZNF444Q8N0Y2 327 aaPredicted RBP25.77■■□□□ 1.72
PDLIM3-203ENST00000284771 ESR2Q92731 530 aa25.77■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms