RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 PCDH12Q9NPG4 1184 aa6.01□□□□□ -1.45
CD44-202ENST00000278385 RAD18Q9NS91 495 aa6.01□□□□□ -1.45
CD44-202ENST00000278385 MAP3K4Q9Y6R4 1608 aa6□□□□□ -1.45
CD44-202ENST00000278385 SOX1O00570 391 aaPredicted RBP6□□□□□ -1.45
CD44-202ENST00000278385 LMNB1P20700 586 aa6□□□□□ -1.45
CD44-202ENST00000278385 ITPKAP23677 461 aa6□□□□□ -1.45
CD44-202ENST00000278385 PSMD2Q13200 908 aa6□□□□□ -1.45
CD44-202ENST00000278385 AP3B2Q13367 1082 aa6□□□□□ -1.45
CD44-202ENST00000278385 NUTM2GQ5VZR2 741 aa6□□□□□ -1.45
CD44-202ENST00000278385 RNF208Q9H0X6 261 aa6□□□□□ -1.45
CD44-202ENST00000278385 OSBPL2Q9H1P3 480 aa6□□□□□ -1.45
CD44-202ENST00000278385 CYP4F12Q9HCS2 524 aa6□□□□□ -1.45
CD44-202ENST00000278385 FAM8A1Q9UBU6 413 aa6□□□□□ -1.45
CD44-202ENST00000278385 RAPGEF6Q8TEU7 1601 aa5.99□□□□□ -1.45
CD44-202ENST00000278385 NEO1Q92859 1461 aa5.99□□□□□ -1.45
CD44-202ENST00000278385 ARHGAP35Q9NRY4 1499 aa5.99□□□□□ -1.45
CD44-202ENST00000278385 GAS2O43903 313 aaKnown RBP5.99□□□□□ -1.45
CD44-202ENST00000278385 SH3BP5O60239 455 aa5.99□□□□□ -1.45
CD44-202ENST00000278385 RAPGEF3O95398 923 aa5.99□□□□□ -1.45
CD44-202ENST00000278385 GNA15P30679 374 aa5.99□□□□□ -1.45
CD44-202ENST00000278385 ZEB1P37275 1124 aaPredicted RBP5.99□□□□□ -1.45
CD44-202ENST00000278385 GNL2Q13823 731 aaKnown RBP5.99□□□□□ -1.45
CD44-202ENST00000278385 BMS1Q14692 1282 aaKnown RBP5.99□□□□□ -1.45
CD44-202ENST00000278385 ZFYVE27Q5T4F4 411 aa5.99□□□□□ -1.45
CD44-202ENST00000278385 TSHZ1Q6ZSZ6 1077 aa5.99□□□□□ -1.45
CD44-202ENST00000278385 CCDC146Q8IYE0 955 aa5.99□□□□□ -1.45
CD44-202ENST00000278385 RPUSD2Q8IZ73 545 aaKnown RBP5.99□□□□□ -1.45
CD44-202ENST00000278385 TMEM87AQ8NBN3 555 aa5.99□□□□□ -1.45
CD44-202ENST00000278385 GALNT11Q8NCW6 608 aa5.99□□□□□ -1.45
CD44-202ENST00000278385 TP53INP1Q96A56 240 aa5.99□□□□□ -1.45
CD44-202ENST00000278385 ZNF576Q9H609 170 aa5.99□□□□□ -1.45
CD44-202ENST00000278385 METTL5Q9NRN9 209 aaKnown RBP5.99□□□□□ -1.45
CD44-202ENST00000278385 TMEM39AQ9NV64 488 aa5.99□□□□□ -1.45
CD44-202ENST00000278385 IFT57Q9NWB7 429 aa5.99□□□□□ -1.45
CD44-202ENST00000278385 ARAP3Q8WWN8 1544 aa5.99□□□□□ -1.45
CD44-202ENST00000278385 TSPOAP1O95153 1857 aa5.98□□□□□ -1.45
CD44-202ENST00000278385 F8W735 103 aaPredicted RBP5.98□□□□□ -1.45
CD44-202ENST00000278385 PAX3P23760 479 aa5.98□□□□□ -1.45
CD44-202ENST00000278385 DNAJA1P31689 397 aaKnown RBP5.98□□□□□ -1.45
CD44-202ENST00000278385 PDE3AQ14432 1141 aa5.98□□□□□ -1.45
CD44-202ENST00000278385 POU4F3Q15319 338 aa5.98□□□□□ -1.45
CD44-202ENST00000278385 C4orf46Q504U0 113 aa5.98□□□□□ -1.45
CD44-202ENST00000278385 EFCAB2Q5VUJ9 269 aa5.98□□□□□ -1.45
CD44-202ENST00000278385 ANKRD34AQ69YU3 496 aa5.98□□□□□ -1.45
CD44-202ENST00000278385 PI16Q6UXB8 463 aa5.98□□□□□ -1.45
CD44-202ENST00000278385 ILDR2Q71H61 639 aa5.98□□□□□ -1.45
CD44-202ENST00000278385 RNF34Q969K3 372 aa5.98□□□□□ -1.45
CD44-202ENST00000278385 DUSP9Q99956 384 aaKnown RBP5.98□□□□□ -1.45
CD44-202ENST00000278385 EMILIN2Q9BXX0 1053 aa5.98□□□□□ -1.45
CD44-202ENST00000278385 ACBD3Q9H3P7 528 aa5.98□□□□□ -1.45
CD44-202ENST00000278385 C12orf49Q9H741 205 aa5.98□□□□□ -1.45
CD44-202ENST00000278385 ABCB6Q9NP58 842 aa5.98□□□□□ -1.45
CD44-202ENST00000278385 WWC3Q9ULE0 1092 aa5.98□□□□□ -1.45
CD44-202ENST00000278385 PPM1HQ9ULR3 514 aa5.98□□□□□ -1.45
CD44-202ENST00000278385 PPRC1Q5VV67 1664 aaKnown RBP5.98□□□□□ -1.45
CD44-202ENST00000278385 CFAP43Q8NDM7 1665 aa5.98□□□□□ -1.45
CD44-202ENST00000278385 DDX3YO15523 660 aaKnown RBP5.97□□□□□ -1.45
CD44-202ENST00000278385 B3GALT4O96024 378 aa5.97□□□□□ -1.45
CD44-202ENST00000278385 RHBDL3P58872 404 aa5.97□□□□□ -1.45
CD44-202ENST00000278385 FANCCQ00597 558 aa5.97□□□□□ -1.45
CD44-202ENST00000278385 DOC2BQ14184 412 aa5.97□□□□□ -1.45
CD44-202ENST00000278385 EXOSC6Q5RKV6 272 aaKnown RBP5.97□□□□□ -1.45
CD44-202ENST00000278385 CLEC4GQ6UXB4 293 aa5.97□□□□□ -1.45
CD44-202ENST00000278385 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.97□□□□□ -1.45
CD44-202ENST00000278385 FILIP1Q7Z7B0 1213 aa5.97□□□□□ -1.45
CD44-202ENST00000278385 C12orf50Q8NA57 414 aaPredicted RBP5.97□□□□□ -1.45
CD44-202ENST00000278385 YIPF2Q9BWQ6 316 aa5.97□□□□□ -1.45
CD44-202ENST00000278385 CBX8Q9HC52 389 aa5.97□□□□□ -1.45
CD44-202ENST00000278385 DDX56Q9NY93 547 aaKnown RBP5.97□□□□□ -1.45
CD44-202ENST00000278385 PNMA2Q9UL42 364 aa5.97□□□□□ -1.45
CD44-202ENST00000278385 G3BP2Q9UN86 482 aaKnown RBP5.97□□□□□ -1.45
CD44-202ENST00000278385 TTF2Q9UNY4 1162 aaKnown RBP5.97□□□□□ -1.45
CD44-202ENST00000278385 MRPL42Q9Y6G3 142 aaKnown RBP5.97□□□□□ -1.45
CD44-202ENST00000278385 DHX15O43143 795 aaKnown RBP5.96□□□□□ -1.46
CD44-202ENST00000278385 ALX3O95076 343 aa5.96□□□□□ -1.46
CD44-202ENST00000278385 SLFN14P0C7P3 912 aa5.96□□□□□ -1.46
CD44-202ENST00000278385 NOS3P29474 1203 aa5.96□□□□□ -1.46
CD44-202ENST00000278385 USP11P51784 963 aa5.96□□□□□ -1.46
CD44-202ENST00000278385 ZNF157P51786 506 aaPredicted RBP5.96□□□□□ -1.46
CD44-202ENST00000278385 TBX4P57082 545 aa5.96□□□□□ -1.46
CD44-202ENST00000278385 FOXD4Q12950 439 aaPredicted RBP5.96□□□□□ -1.46
CD44-202ENST00000278385 ZNF423Q2M1K9 1284 aa5.96□□□□□ -1.46
CD44-202ENST00000278385 UBASH3BQ8TF42 649 aa5.96□□□□□ -1.46
CD44-202ENST00000278385 STAG1Q8WVM7 1258 aa5.96□□□□□ -1.46
CD44-202ENST00000278385 PLCH2O75038 1416 aa5.96□□□□□ -1.46
CD44-202ENST00000278385 AKNAQ7Z591 1439 aa5.96□□□□□ -1.46
CD44-202ENST00000278385 DENND4BO75064 1496 aaPredicted RBP5.96□□□□□ -1.46
CD44-202ENST00000278385 ABCA9Q8IUA7 1624 aa5.96□□□□□ -1.46
CD44-202ENST00000278385 SORBS3O60504 671 aa5.95□□□□□ -1.46
CD44-202ENST00000278385 DNAJC6O75061 913 aa5.95□□□□□ -1.46
CD44-202ENST00000278385 S100BP04271 92 aaPredicted RBP5.95□□□□□ -1.46
CD44-202ENST00000278385 MAOBP27338 520 aa5.95□□□□□ -1.46
CD44-202ENST00000278385 CLIP1P30622 1438 aa5.95□□□□□ -1.46
CD44-202ENST00000278385 TNNI2P48788 182 aa5.95□□□□□ -1.46
CD44-202ENST00000278385 ARID5AQ03989 594 aa5.95□□□□□ -1.46
CD44-202ENST00000278385 TROQ12816 1431 aaPredicted RBP5.95□□□□□ -1.46
CD44-202ENST00000278385 BIRC2Q13490 618 aa5.95□□□□□ -1.46
CD44-202ENST00000278385 LRRC14Q15048 493 aa5.95□□□□□ -1.46
CD44-202ENST00000278385 UVSSAQ2YD98 709 aa5.95□□□□□ -1.46
CD44-202ENST00000278385 CNPY4Q8N129 248 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms