RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 ZCCHC17Q9NP64 241 aaKnown RBP17.6■□□□□ 0.41
HMGN3-201ENST00000275036 ZHX2Q9Y6X8 837 aa17.6■□□□□ 0.41
HMGN3-201ENST00000275036 PDHXO00330 501 aa17.59■□□□□ 0.41
HMGN3-201ENST00000275036 TBC1D12O60347 775 aa17.59■□□□□ 0.41
HMGN3-201ENST00000275036 IGSF3O75054 1194 aa17.59■□□□□ 0.41
HMGN3-201ENST00000275036 IFIT2P09913 472 aaKnown RBP17.59■□□□□ 0.41
HMGN3-201ENST00000275036 CYP7A1P22680 504 aa17.59■□□□□ 0.41
HMGN3-201ENST00000275036 CTGFP29279 349 aa17.59■□□□□ 0.41
HMGN3-201ENST00000275036 MAGEB6Q8N7X4 407 aa17.59■□□□□ 0.41
HMGN3-201ENST00000275036 NOL10Q9BSC4 688 aaKnown RBP17.59■□□□□ 0.41
HMGN3-201ENST00000275036 EFCC1Q9HA90 598 aa17.59■□□□□ 0.41
HMGN3-201ENST00000275036 AFG3L2Q9Y4W6 797 aa17.59■□□□□ 0.41
HMGN3-201ENST00000275036 FLT1P17948 1338 aa17.58■□□□□ 0.4
HMGN3-201ENST00000275036 CXCL11O14625 94 aa17.58■□□□□ 0.4
HMGN3-201ENST00000275036 SMARCA5O60264 1052 aaPredicted RBP17.58■□□□□ 0.4
HMGN3-201ENST00000275036 CTNND1O60716 968 aaKnown RBP17.58■□□□□ 0.4
HMGN3-201ENST00000275036 BAG3O95817 575 aa17.58■□□□□ 0.4
HMGN3-201ENST00000275036 C17orf99Q6UX52 265 aa17.58■□□□□ 0.4
HMGN3-201ENST00000275036 MAPKAPK5Q8IW41 473 aa17.58■□□□□ 0.4
HMGN3-201ENST00000275036 MIGA1Q8NAN2 632 aa17.58■□□□□ 0.4
HMGN3-201ENST00000275036 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.58■□□□□ 0.4
HMGN3-201ENST00000275036 DNAJC18Q9H819 358 aa17.58■□□□□ 0.4
HMGN3-201ENST00000275036 CPA4Q9UI42 421 aa17.58■□□□□ 0.4
HMGN3-201ENST00000275036 A0A0G2JLL6 359 aaPredicted RBP17.57■□□□□ 0.4
HMGN3-201ENST00000275036 PRRT2Q7Z6L0 340 aaPredicted RBP17.57■□□□□ 0.4
HMGN3-201ENST00000275036 TGFBRAP1Q8WUH2 860 aa17.57■□□□□ 0.4
HMGN3-201ENST00000275036 EDC3Q96F86 508 aaKnown RBP17.57■□□□□ 0.4
HMGN3-201ENST00000275036 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.57■□□□□ 0.4
HMGN3-201ENST00000275036 PICK1Q9NRD5 415 aa17.57■□□□□ 0.4
HMGN3-201ENST00000275036 PCDHB15Q9Y5E8 787 aa17.57■□□□□ 0.4
HMGN3-201ENST00000275036 LOC285556D6RIA3 1793 aa17.56■□□□□ 0.4
HMGN3-201ENST00000275036 ECM2O94769 699 aaPredicted RBP17.56■□□□□ 0.4
HMGN3-201ENST00000275036 CYP2C8P10632 490 aa17.56■□□□□ 0.4
HMGN3-201ENST00000275036 PLCG2P16885 1265 aa17.56■□□□□ 0.4
HMGN3-201ENST00000275036 JAG1P78504 1218 aa17.56■□□□□ 0.4
HMGN3-201ENST00000275036 LACTBP83111 547 aaPredicted RBP17.56■□□□□ 0.4
HMGN3-201ENST00000275036 MAP3K12Q12852 859 aa17.56■□□□□ 0.4
HMGN3-201ENST00000275036 SHROOM1Q2M3G4 852 aaPredicted RBP17.56■□□□□ 0.4
HMGN3-201ENST00000275036 DNAJC2Q99543 621 aaKnown RBP17.56■□□□□ 0.4
HMGN3-201ENST00000275036 LRRCC1Q9C099 1032 aa17.56■□□□□ 0.4
HMGN3-201ENST00000275036 DCTPP1Q9H773 170 aa17.56■□□□□ 0.4
HMGN3-201ENST00000275036 PTCH2Q9Y6C5 1203 aa17.56■□□□□ 0.4
HMGN3-201ENST00000275036 DDX60LQ5H9U9 1706 aaKnown RBP17.55■□□□□ 0.4
HMGN3-201ENST00000275036 NAV1Q8NEY1 1877 aa17.55■□□□□ 0.4
HMGN3-201ENST00000275036 TRIM75PA6NK02 468 aa17.55■□□□□ 0.4
HMGN3-201ENST00000275036 GOLIM4O00461 696 aa17.55■□□□□ 0.4
HMGN3-201ENST00000275036 RBBP6Q7Z6E9 1792 aaKnown RBP17.54■□□□□ 0.4
HMGN3-201ENST00000275036 PDE6AP16499 860 aa17.54■□□□□ 0.4
HMGN3-201ENST00000275036 ATP5JP18859 108 aa17.54■□□□□ 0.4
HMGN3-201ENST00000275036 TTF1Q15361 905 aaPredicted RBP17.54■□□□□ 0.4
HMGN3-201ENST00000275036 SLC4A8Q2Y0W8 1093 aa17.54■□□□□ 0.4
HMGN3-201ENST00000275036 CRBNQ96SW2 442 aa17.54■□□□□ 0.4
HMGN3-201ENST00000275036 BOLA2Q9H3K6 86 aa17.54■□□□□ 0.4
HMGN3-201ENST00000275036 SAP30BPQ9UHR5 308 aaKnown RBP17.54■□□□□ 0.4
HMGN3-201ENST00000275036 PALD1Q9ULE6 856 aa17.54■□□□□ 0.4
HMGN3-201ENST00000275036 POTEFA5A3E0 1075 aa17.53■□□□□ 0.4
HMGN3-201ENST00000275036 BCRP11274 1271 aa17.53■□□□□ 0.4
HMGN3-201ENST00000275036 CAP2P40123 477 aa17.53■□□□□ 0.4
HMGN3-201ENST00000275036 TREML2Q5T2D2 321 aa17.53■□□□□ 0.4
HMGN3-201ENST00000275036 GADL1Q6ZQY3 521 aa17.53■□□□□ 0.4
HMGN3-201ENST00000275036 METTL16Q86W50 562 aaKnown RBP17.53■□□□□ 0.4
HMGN3-201ENST00000275036 ARMC5Q96C12 935 aa17.53■□□□□ 0.4
HMGN3-201ENST00000275036 RIOK1Q9BRS2 568 aaKnown RBP17.53■□□□□ 0.4
HMGN3-201ENST00000275036 DHX36Q9H2U1 1008 aaKnown RBP17.53■□□□□ 0.4
HMGN3-201ENST00000275036 PI4KBQ9UBF8 816 aa17.53■□□□□ 0.4
HMGN3-201ENST00000275036 BAZ2AQ9UIF9 1905 aaKnown RBP17.53■□□□□ 0.4
HMGN3-201ENST00000275036 TCRBV5S4A2TA0A5A2 114 aa17.52■□□□□ 0.4
HMGN3-201ENST00000275036 SLFNL1Q499Z3 407 aa17.52■□□□□ 0.4
HMGN3-201ENST00000275036 SLC9C2Q5TAH2 1124 aa17.52■□□□□ 0.4
HMGN3-201ENST00000275036 TRIM47Q96LD4 638 aa17.52■□□□□ 0.4
HMGN3-201ENST00000275036 HAUS7Q99871 368 aa17.52■□□□□ 0.4
HMGN3-201ENST00000275036 PAG1Q9NWQ8 432 aa17.52■□□□□ 0.4
HMGN3-201ENST00000275036 HERC5Q9UII4 1024 aaKnown RBP17.52■□□□□ 0.4
HMGN3-201ENST00000275036 ZNF532Q9HCE3 1301 aa17.51■□□□□ 0.39
HMGN3-201ENST00000275036 CHGBP05060 677 aa17.51■□□□□ 0.39
HMGN3-201ENST00000275036 TMED8Q6PL24 325 aaPredicted RBP17.51■□□□□ 0.39
HMGN3-201ENST00000275036 FASTKD5Q7L8L6 764 aaKnown RBP17.51■□□□□ 0.39
HMGN3-201ENST00000275036 PARK7Q99497 189 aaKnown RBP17.51■□□□□ 0.39
HMGN3-201ENST00000275036 MGAMO43451 1857 aa17.5■□□□□ 0.39
HMGN3-201ENST00000275036 SPP2Q13103 211 aa17.5■□□□□ 0.39
HMGN3-201ENST00000275036 ZNF333Q96JL9 665 aa17.5■□□□□ 0.39
HMGN3-201ENST00000275036 AGTPBP1Q9UPW5 1226 aa17.5■□□□□ 0.39
HMGN3-201ENST00000275036 MKI67P46013 3256 aaKnown RBP17.5■□□□□ 0.39
HMGN3-201ENST00000275036 MAGEB6P1A0A0J9YX57 407 aa17.49■□□□□ 0.39
HMGN3-201ENST00000275036 GDF11O95390 407 aa17.49■□□□□ 0.39
HMGN3-201ENST00000275036 PSMC4P43686 418 aa17.49■□□□□ 0.39
HMGN3-201ENST00000275036 USP5P45974 858 aa17.49■□□□□ 0.39
HMGN3-201ENST00000275036 HMGCS2P54868 508 aa17.49■□□□□ 0.39
HMGN3-201ENST00000275036 EVX2Q03828 476 aa17.49■□□□□ 0.39
HMGN3-201ENST00000275036 TSHZ3Q63HK5 1081 aa17.49■□□□□ 0.39
HMGN3-201ENST00000275036 CERS3Q8IU89 383 aa17.49■□□□□ 0.39
HMGN3-201ENST00000275036 ZNF280CQ8ND82 737 aa17.49■□□□□ 0.39
HMGN3-201ENST00000275036 SH3TC2Q8TF17 1288 aa17.49■□□□□ 0.39
HMGN3-201ENST00000275036 SLC45A1Q9Y2W3 748 aa17.49■□□□□ 0.39
HMGN3-201ENST00000275036 USP17L5A8MUK1 530 aa17.48■□□□□ 0.39
HMGN3-201ENST00000275036 OSBPP22059 807 aa17.48■□□□□ 0.39
HMGN3-201ENST00000275036 ADD2P35612 726 aa17.48■□□□□ 0.39
HMGN3-201ENST00000275036 KIF22Q14807 665 aa17.48■□□□□ 0.39
HMGN3-201ENST00000275036 FOXP4Q8IVH2 680 aaPredicted RBP17.48■□□□□ 0.39
HMGN3-201ENST00000275036 ECHDC1Q9NTX5 307 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms