RNA–Protein interactions for RNA: ENST00000268717.9

COPS3-201, Transcript of COP9 signalosome subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPS3, Length 1,641 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-201ENST00000268717 CLEC11AQ9Y240 323 aa18.03■□□□□ 0.48
COPS3-201ENST00000268717 GAKO14976 1311 aa18.03■□□□□ 0.48
COPS3-201ENST00000268717 B4E1Z4 1266 aa18.02■□□□□ 0.48
COPS3-201ENST00000268717 VIL1P09327 827 aaKnown RBP18.02■□□□□ 0.48
COPS3-201ENST00000268717 PLCG2P16885 1265 aa18.02■□□□□ 0.48
COPS3-201ENST00000268717 RPS12P25398 132 aaKnown RBP18.02■□□□□ 0.48
COPS3-201ENST00000268717 CTDSPL2Q05D32 466 aa18.02■□□□□ 0.48
COPS3-201ENST00000268717 GRIK5Q16478 980 aa18.02■□□□□ 0.48
COPS3-201ENST00000268717 MFSD14BQ5SR56 506 aa18.02■□□□□ 0.48
COPS3-201ENST00000268717 CYB5R4Q7L1T6 521 aa18.02■□□□□ 0.48
COPS3-201ENST00000268717 CHST3Q7LGC8 479 aa18.02■□□□□ 0.48
COPS3-201ENST00000268717 CNOT7Q9UIV1 285 aaKnown RBP18.02■□□□□ 0.48
COPS3-201ENST00000268717 MTMR6Q9Y217 621 aa18.02■□□□□ 0.48
COPS3-201ENST00000268717 GPR75-ASB3A0A0A6YYF3 556 aa18.01■□□□□ 0.47
COPS3-201ENST00000268717 RCAN1P53805 252 aa18.01■□□□□ 0.47
COPS3-201ENST00000268717 SART3Q15020 963 aaKnown RBP18.01■□□□□ 0.47
COPS3-201ENST00000268717 CTR9Q6PD62 1173 aa18.01■□□□□ 0.47
COPS3-201ENST00000268717 RGS22Q8NE09 1264 aa18.01■□□□□ 0.47
COPS3-201ENST00000268717 NSUN7Q8NE18 718 aaKnown RBP18.01■□□□□ 0.47
COPS3-201ENST00000268717 IGDCC4Q8TDY8 1250 aa18.01■□□□□ 0.47
COPS3-201ENST00000268717 MKRN1Q9UHC7 482 aaKnown RBP18.01■□□□□ 0.47
COPS3-201ENST00000268717 NID2Q14112 1375 aa18.01■□□□□ 0.47
COPS3-201ENST00000268717 KLF18A0A0U1RQI7 1052 aa18.01■□□□□ 0.47
COPS3-201ENST00000268717 F13A1P00488 732 aa18.01■□□□□ 0.47
COPS3-201ENST00000268717 FKBP1AP62942 108 aaKnown RBP18.01■□□□□ 0.47
COPS3-201ENST00000268717 LARP1BQ659C4 914 aaKnown RBP18.01■□□□□ 0.47
COPS3-201ENST00000268717 MICALL2Q8IY33 904 aa18.01■□□□□ 0.47
COPS3-201ENST00000268717 TMTC2Q8N394 836 aa18.01■□□□□ 0.47
COPS3-201ENST00000268717 ESR2Q92731 530 aa18.01■□□□□ 0.47
COPS3-201ENST00000268717 ZSWIM5Q9P217 1185 aa18.01■□□□□ 0.47
COPS3-201ENST00000268717 TACC3Q9Y6A5 838 aa18.01■□□□□ 0.47
COPS3-201ENST00000268717 ROBO3Q96MS0 1386 aa18■□□□□ 0.47
COPS3-201ENST00000268717 SHTN1A0MZ66 631 aa18■□□□□ 0.47
COPS3-201ENST00000268717 ORC4O43929 436 aa18■□□□□ 0.47
COPS3-201ENST00000268717 TRAK2O60296 914 aa18■□□□□ 0.47
COPS3-201ENST00000268717 KDM4AO75164 1064 aa18■□□□□ 0.47
COPS3-201ENST00000268717 SLC3A2P08195 630 aaKnown RBP18■□□□□ 0.47
COPS3-201ENST00000268717 MAP1SQ66K74 1059 aaPredicted RBP18■□□□□ 0.47
COPS3-201ENST00000268717 LY9Q9HBG7 655 aa18■□□□□ 0.47
COPS3-201ENST00000268717 BRPF3Q9ULD4 1205 aa18■□□□□ 0.47
COPS3-201ENST00000268717 PASKQ96RG2 1323 aa17.99■□□□□ 0.47
COPS3-201ENST00000268717 USP17L3A6NCW0 530 aa17.99■□□□□ 0.47
COPS3-201ENST00000268717 USP17L4A6NCW7 530 aa17.99■□□□□ 0.47
COPS3-201ENST00000268717 GOLGA8BA8MQT2 603 aa17.99■□□□□ 0.47
COPS3-201ENST00000268717 H7C1D1 291 aa17.99■□□□□ 0.47
COPS3-201ENST00000268717 ITGBL1O95965 494 aaPredicted RBP17.99■□□□□ 0.47
COPS3-201ENST00000268717 RSBN1LQ6PCB5 846 aaPredicted RBP17.99■□□□□ 0.47
COPS3-201ENST00000268717 USP17L1Q7RTZ2 530 aa17.99■□□□□ 0.47
COPS3-201ENST00000268717 NKX2-3Q8TAU0 364 aa17.99■□□□□ 0.47
COPS3-201ENST00000268717 HPS5Q9UPZ3 1129 aa17.99■□□□□ 0.47
COPS3-201ENST00000268717 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.99■□□□□ 0.47
COPS3-201ENST00000268717 MINDY4BA8MYZ0 360 aa17.98■□□□□ 0.47
COPS3-201ENST00000268717 USP17L12C9JPN9 530 aa17.98■□□□□ 0.47
COPS3-201ENST00000268717 USP17L21D6R901 530 aa17.98■□□□□ 0.47
COPS3-201ENST00000268717 CTDNEP1O95476 244 aa17.98■□□□□ 0.47
COPS3-201ENST00000268717 GTF2IP78347 998 aa17.98■□□□□ 0.47
COPS3-201ENST00000268717 HTRA3P83110 453 aa17.98■□□□□ 0.47
COPS3-201ENST00000268717 DIXDC1Q155Q3 683 aa17.98■□□□□ 0.47
COPS3-201ENST00000268717 TMEM67Q5HYA8 995 aa17.98■□□□□ 0.47
COPS3-201ENST00000268717 MCTP1Q6DN14 999 aa17.98■□□□□ 0.47
COPS3-201ENST00000268717 AGBL3Q8NEM8 1001 aa17.98■□□□□ 0.47
COPS3-201ENST00000268717 TRPM4Q8TD43 1214 aa17.98■□□□□ 0.47
COPS3-201ENST00000268717 GPHNQ9NQX3 736 aaPredicted RBP17.98■□□□□ 0.47
COPS3-201ENST00000268717 POLR2AP24928 1970 aaKnown RBP17.98■□□□□ 0.47
COPS3-201ENST00000268717 BAZ2AQ9UIF9 1905 aaKnown RBP17.98■□□□□ 0.47
COPS3-201ENST00000268717 PTPDC1A2A3K4 754 aa17.98■□□□□ 0.47
COPS3-201ENST00000268717 IFIT3O14879 490 aaKnown RBP17.98■□□□□ 0.47
COPS3-201ENST00000268717 HIRAP54198 1017 aaPredicted RBP17.98■□□□□ 0.47
COPS3-201ENST00000268717 APOA5Q6Q788 366 aa17.98■□□□□ 0.47
COPS3-201ENST00000268717 AMOTL1Q8IY63 956 aa17.98■□□□□ 0.47
COPS3-201ENST00000268717 FAM184AQ8NB25 1140 aa17.98■□□□□ 0.47
COPS3-201ENST00000268717 INCENPQ9NQS7 918 aa17.98■□□□□ 0.47
COPS3-201ENST00000268717 MYH2Q9UKX2 1941 aa17.97■□□□□ 0.47
COPS3-201ENST00000268717 ERICH2A1L162 156 aa17.97■□□□□ 0.47
COPS3-201ENST00000268717 JAK2O60674 1132 aa17.97■□□□□ 0.47
COPS3-201ENST00000268717 BTDP43251 543 aa17.97■□□□□ 0.47
COPS3-201ENST00000268717 CCT2P78371 535 aaKnown RBP17.97■□□□□ 0.47
COPS3-201ENST00000268717 TMEM87AQ8NBN3 555 aa17.97■□□□□ 0.47
COPS3-201ENST00000268717 SH3RF3Q8TEJ3 882 aaPredicted RBP17.97■□□□□ 0.47
COPS3-201ENST00000268717 GMLQ99445 158 aa17.97■□□□□ 0.47
COPS3-201ENST00000268717 MRIQ9BWK5 157 aa17.97■□□□□ 0.47
COPS3-201ENST00000268717 LMBRD1Q9NUN5 540 aa17.97■□□□□ 0.47
COPS3-201ENST00000268717 LAMB1P07942 1786 aa17.97■□□□□ 0.47
COPS3-201ENST00000268717 CDKL5O76039 1030 aa17.96■□□□□ 0.47
COPS3-201ENST00000268717 USP5P45974 858 aa17.96■□□□□ 0.47
COPS3-201ENST00000268717 DACT2Q5SW24 774 aa17.96■□□□□ 0.47
COPS3-201ENST00000268717 C12orf60Q5U649 245 aa17.96■□□□□ 0.47
COPS3-201ENST00000268717 STRIP1Q5VSL9 837 aa17.96■□□□□ 0.47
COPS3-201ENST00000268717 SAMD7Q7Z3H4 446 aa17.96■□□□□ 0.47
COPS3-201ENST00000268717 ZC3H15Q8WU90 426 aaKnown RBP17.96■□□□□ 0.47
COPS3-201ENST00000268717 PGAP2Q9UHJ9 254 aa17.96■□□□□ 0.47
COPS3-201ENST00000268717 TRPM7Q96QT4 1865 aa17.96■□□□□ 0.47
COPS3-201ENST00000268717 VPS37CA5D8V6 355 aaPredicted RBP17.95■□□□□ 0.46
COPS3-201ENST00000268717 ZBTB43O43298 467 aa17.95■□□□□ 0.46
COPS3-201ENST00000268717 DTNBO60941 627 aa17.95■□□□□ 0.46
COPS3-201ENST00000268717 METAP2P50579 478 aaKnown RBP eCLIP17.95■□□□□ 0.46
COPS3-201ENST00000268717 PDE4BQ07343 736 aa17.95■□□□□ 0.46
COPS3-201ENST00000268717 WTAPQ15007 396 aa17.95■□□□□ 0.46
COPS3-201ENST00000268717 KLHL40Q2TBA0 621 aa17.95■□□□□ 0.46
COPS3-201ENST00000268717 CPLX2Q6PUV4 134 aaKnown RBP17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms